Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI03441 Sapria himalayana HOM05D003501 ORTHO05D004388 7.5e-141 503.8 250 100.0
SHI25258 Sapria himalayana HOM05D003501 ORTHO05D004388 3.7e-108 395.2 249 79.5
TWI79G0225 Tripterygium wilfordii HOM05D003501 ORTHO05D004388 3.3e-88 328.9 250 64.8
Manes.04G047600 Manihot esculenta HOM05D003501 ORTHO05D004388 3.6e-87 325.5 249 62.2
FAN21G1855 Fragaria x ananassa HOM05D003501 ORTHO05D004388 5.8e-85 318.2 249 62.2
Atru.chr3.3108 Acer truncatum HOM05D003501 ORTHO05D004388 7.6e-85 317.8 250 62.4
FvH4_3g12140 Fragaria vesca HOM05D003501 ORTHO05D004388 2.9e-84 315.8 249 61.8
FAN16G1741 Fragaria x ananassa HOM05D003501 ORTHO05D004388 2.9e-84 315.8 249 61.8
FAN25G1502 Fragaria x ananassa HOM05D003501 ORTHO05D004388 2.9e-84 315.8 249 61.8
Potri.009G016000 Populus trichocarpa HOM05D003501 ORTHO05D004388 2.9e-84 315.8 249 63.1
PGR102G2752 Punica granatum HOM05D003501 ORTHO05D004388 2.9e-84 315.8 249 62.2
CSS0017931 Camellia sinensis var. sinensis HOM05D003501 ORTHO05D004388 8.4e-84 314.3 249 63.9
vmacro18212 Vaccinium macrocarpon HOM05D003501 ORTHO05D004388 8.4e-84 314.3 251 62.9
Lj2A610G28 Lonicera japonica HOM05D003501 ORTHO05D004388 1.1e-83 313.9 251 63.7
Atru.chr9.1898 Acer truncatum HOM05D003501 ORTHO05D004388 1.9e-83 313.2 250 62.0
CiPaw.14G095200 Carya illinoinensis HOM05D003501 ORTHO05D004388 2.4e-83 312.8 249 61.4
Cpa.g.sc56.89 Carica papaya HOM05D003501 ORTHO05D004388 7.1e-83 311.2 250 60.8
Dinv15534 Davidia involucrata HOM05D003501 ORTHO05D004388 7.1e-83 311.2 258 62.4
SGA_v2.0_scaffold135G34778 Striga asiatica HOM05D003501 ORTHO05D004388 9.3e-83 310.8 250 62.4
Rhsim08G0066100 Rhododendron simsii HOM05D003501 ORTHO05D004388 1.6e-82 310.1 251 61.8
RcHm_v2.0_Chr5g0019871 Rosa chinensis HOM05D003501 ORTHO05D004388 2.7e-82 309.3 249 61.0
Actinidia38747 Actinidia chinensis HOM05D003501 ORTHO05D004388 6.0e-82 308.1 251 61.8
Hund15639 Selenicereus undatus HOM05D003501 ORTHO05D004388 1.0e-81 307.4 251 61.0
Potri.001G216400 Populus trichocarpa HOM05D003501 ORTHO05D004388 1.3e-81 307.0 250 62.8
Migut.H00888 Erythranthe guttata HOM05D003501 ORTHO05D004388 2.3e-81 306.2 250 61.2
MD10G1234700 Malus domestica HOM05D003501 ORTHO05D004388 2.3e-81 306.2 250 62.4
TAR481G0007 Trochodendron aralioides HOM05D003501 ORTHO05D004388 2.3e-81 306.2 251 62.2
CiPaw.08G137600 Carya illinoinensis HOM05D003501 ORTHO05D004388 3.0e-81 305.8 249 60.2
Ciclev10028663m.g Citrus clementina HOM05D003501 ORTHO05D004388 5.1e-81 305.1 250 60.8
Sc10g0003820 Simmondsia chinensis HOM05D003501 ORTHO05D004388 8.7e-81 304.3 251 61.8
Eucgr.B03813 Eucalyptus grandis HOM05D003501 ORTHO05D004388 1.1e-80 303.9 250 61.6
Sopen02g018490 Solanum pennellii HOM05D003501 ORTHO05D004388 1.9e-80 303.1 250 61.2
Solyc02g069340.4 Solanum lycopersicum HOM05D003501 ORTHO05D004388 2.5e-80 302.8 250 60.8
PGSC0003DMG400021209 Solanum tuberosum HOM05D003501 ORTHO05D004388 4.3e-80 302.0 250 61.2
Prupe.4G110100 Prunus persica HOM05D003501 ORTHO05D004388 5.6e-80 301.6 250 61.2
Ah.11g044900 Amaranthus hybridus HOM05D003501 ORTHO05D004388 7.3e-80 301.2 251 60.2
MSTRG.12186 Avicennia marina HOM05D003501 ORTHO05D004388 7.3e-80 301.2 250 60.4
Hma1.2p1_0199F.1_g085800 Hydrangea macrophylla HOM05D003501 ORTHO05D004388 2.1e-79 299.7 251 60.2
SalBow1G3035 Salvia bowleyana HOM05D003501 ORTHO05D004388 3.6e-79 298.9 250 60.8
Cfa010173 Carpinus fangiana HOM05D003501 ORTHO05D004388 4.8e-79 298.5 249 59.8
AUR62029643 Chenopodium quinoa HOM05D003501 ORTHO05D004388 4.8e-79 298.5 250 60.0
Cc07_g02990 Coffea canephora HOM05D003501 ORTHO05D004388 1.1e-78 297.4 251 61.0
Aqoxy3G03267 Aquilegia oxysepala HOM05D003501 ORTHO05D004388 2.4e-78 296.2 250 57.6
ECA232G0193 Erigeron canadensis HOM05D003501 ORTHO05D004388 4.0e-78 295.4 250 59.6
EL10As4g23426 Beta vulgaris HOM05D003501 ORTHO05D004388 5.3e-78 295.0 250 58.4
Haze_23560 Corylus avellana HOM05D003501 ORTHO05D004388 9.0e-78 294.3 249 59.0
Lalb_Chr09g0327341 Lupinus albus HOM05D003501 ORTHO05D004388 9.0e-78 294.3 250 60.0
THA.LOC104809596 Tarenaya hassleriana HOM05D003501 ORTHO05D004388 9.0e-78 294.3 249 57.4
Aa31LG2G15030 Aethionema arabicum HOM05D003501 ORTHO05D004388 1.5e-77 293.5 249 56.2
Actinidia26218 Actinidia chinensis HOM05D003501 ORTHO05D004388 2.0e-77 293.1 264 58.7
VMungo0720G0165 Vigna mungo HOM05D003501 ORTHO05D004388 2.6e-77 292.7 248 58.9
Carub.0006s1974 Capsella rubella HOM05D003501 ORTHO05D004388 3.4e-77 292.4 249 56.6
HanXRQChr11g0321781 Helianthus annuus HOM05D003501 ORTHO05D004388 4.5e-77 292.0 250 58.4
Nn8g40776 Nelumbo nucifera HOM05D003501 ORTHO05D004388 4.5e-77 292.0 251 59.4
VMungo0251G0431 Vigna mungo HOM05D003501 ORTHO05D004388 4.5e-77 292.0 248 58.5
MELO3C015060.2 Cucumis melo HOM05D003501 ORTHO05D004388 5.8e-77 291.6 249 57.8
Sed0017179 Sechium edule HOM05D003501 ORTHO05D004388 5.8e-77 291.6 249 58.2
Glyma.13G179100 Glycine max HOM05D003501 ORTHO05D004388 7.6e-77 291.2 250 58.0
Lsat_1_v5_gn_4_134160 Lactuca sativa HOM05D003501 ORTHO05D004388 9.9e-77 290.8 252 59.9
arahy.Tifrunner.gnm1.ann1.57UCU4 Arachis hypogaea HOM05D003501 ORTHO05D004388 1.3e-76 290.4 242 60.3
BcaC08g42972 Brassica carinata HOM05D003501 ORTHO05D004388 1.3e-76 290.4 249 55.0
C06p02140 Brassica napus HOM05D003501 ORTHO05D004388 1.3e-76 290.4 249 55.0
A10p06220 Brassica napus HOM05D003501 ORTHO05D004388 1.7e-76 290.0 249 55.0
BolC6t35344H Brassica oleracea HOM05D003501 ORTHO05D004388 1.7e-76 290.0 249 55.0
BraA10t42890Z Brassica rapa HOM05D003501 ORTHO05D004388 1.7e-76 290.0 249 55.0
Thhalv10013826m.g Eutrema salsugineum HOM05D003501 ORTHO05D004388 1.7e-76 290.0 249 55.8
arahy.Tifrunner.gnm1.ann1.FG3FW1 Arachis hypogaea HOM05D003501 ORTHO05D004388 2.2e-76 289.7 242 60.3
COL.COLO4_25421 Corchorus olitorius HOM05D003501 ORTHO05D004388 2.2e-76 289.7 249 58.6
Phvul.002G221600 Phaseolus vulgaris HOM05D003501 ORTHO05D004388 4.9e-76 288.5 248 57.7
ClCG03G012190 Citrullus lanatus HOM05D003501 ORTHO05D004388 6.4e-76 288.1 249 57.0
BcaB07g33815 Brassica carinata HOM05D003501 ORTHO05D004388 1.4e-75 287.0 249 54.2
Glyma.01G143200 Glycine max HOM05D003501 ORTHO05D004388 1.4e-75 287.0 250 56.8
Thecc.09G271900 Theobroma cacao HOM05D003501 ORTHO05D004388 1.4e-75 287.0 249 58.6
Lj2g0019396 Lotus japonicus HOM05D003501 ORTHO05D004388 5.4e-75 285.0 250 56.8
BolC8t47419H Brassica oleracea HOM05D003501 ORTHO05D004388 9.3e-75 284.3 249 54.6
Sp6g23090 Schrenkiella parvula HOM05D003501 ORTHO05D004388 9.3e-75 284.3 249 53.4
BraA08t32548Z Brassica rapa HOM05D003501 ORTHO05D004388 1.2e-74 283.9 249 54.2
BcaC07g37193 Brassica carinata HOM05D003501 ORTHO05D004388 1.6e-74 283.5 249 54.6
CsaV3_1G043830 Cucumis sativus L. HOM05D003501 ORTHO05D004388 1.6e-74 283.5 249 56.2
GSVIVG01032606001 Vitis vinifera HOM05D003501 ORTHO05D004388 1.6e-74 283.5 251 59.8
Duzib168G1975 Durio zibethinus HOM05D003501 ORTHO05D004388 2.1e-74 283.1 250 58.0
MBI14_g02806_MAGBIO Magnolia biondii HOM05D003501 ORTHO05D004388 2.1e-74 283.1 244 58.6
MBI14_g41488_MAGBIO Magnolia biondii HOM05D003501 ORTHO05D004388 2.1e-74 283.1 244 58.6
PSO170G6031 Papaver somniferum HOM05D003501 ORTHO05D004388 2.1e-74 283.1 241 60.2
BcaB04g17480 Brassica carinata HOM05D003501 ORTHO05D004388 4.6e-74 282.0 249 54.2
PSO063G0318 Papaver somniferum HOM05D003501 ORTHO05D004388 3.9e-73 278.9 248 57.3
HPP92_001388 Vanilla planifolia HOM05D003501 ORTHO05D004388 3.9e-73 278.9 252 57.5
Peaxi162Scf00683g00345 Petunia axillaris HOM05D003501 ORTHO05D004388 6.7e-73 278.1 255 56.9
AL6G33080 Arabidopsis lyrata HOM05D003501 ORTHO05D004388 8.7e-73 277.7 249 53.4
AT5G22100 Arabidopsis thaliana HOM05D003501 ORTHO05D004388 1.1e-72 277.3 249 53.8
Lj2g0023176 Lotus japonicus HOM05D003501 ORTHO05D004388 1.1e-72 277.3 250 55.6
Psat7g031640 Pisum sativum HOM05D003501 ORTHO05D004388 2.5e-72 276.2 250 56.8
PSO170G5263 Papaver somniferum HOM05D003501 ORTHO05D004388 3.3e-72 275.8 248 56.9
Gohir.A09G099800 Gossypium hirsutum HOM05D003501 ORTHO05D004388 4.3e-72 275.4 250 57.6
TPR.G12888 Trifolium pratense HOM05D003501 ORTHO05D004388 1.6e-71 273.5 250 55.2
CSS0035358 Camellia sinensis var. sinensis HOM05D003501 ORTHO05D004388 2.1e-71 273.1 247 58.3
Gohir.D09G099200 Gossypium hirsutum HOM05D003501 ORTHO05D004388 2.1e-71 273.1 250 57.6
Gorai.006G116200 Gossypium raimondii HOM05D003501 ORTHO05D004388 2.1e-71 273.1 250 57.6
Thhalv10028736m.g Eutrema salsugineum HOM05D003501 ORTHO05D004388 2.8e-71 272.7 249 53.4
Os03g0833700 Oryza sativa ssp. japonica HOM05D003501 ORTHO05D004388 2.8e-71 272.7 250 56.8
Zm00001eb316080 Zea mays HOM05D003501 ORTHO05D004388 4.8e-71 271.9 250 56.0
Medtr8g098715 Medicago truncatula HOM05D003501 ORTHO05D004388 1.1e-70 270.8 240 57.5
A08p05420 Brassica napus HOM05D003501 ORTHO05D004388 2.4e-70 269.6 275 49.1
AUR62025912 Chenopodium quinoa HOM05D003501 ORTHO05D004388 2.0e-69 266.5 249 54.6
DCAR_025365 Daucus carota HOM05D003501 ORTHO05D004388 4.5e-69 265.4 249 56.2
MD05G1254500 Malus domestica HOM05D003501 ORTHO05D004388 7.6e-69 264.6 249 55.0
C08p05880 Brassica napus HOM05D003501 ORTHO05D004388 3.8e-68 262.3 281 48.0
SMO144G0146 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 2.7e-66 256.1 250 52.4
Oeu018673.1 Olea europaea HOM05D003501 ORTHO05D004388 3.5e-66 255.8 253 54.5
QL05p062772 Quercus lobata HOM05D003501 ORTHO05D004388 3.5e-66 255.8 232 55.6
Sabra16G0127400 Salix brachista HOM05D003501 ORTHO05D004388 1.3e-65 253.8 330 45.5
Mapoly0187s0002 Marchantia polymorpha HOM05D003501 ORTHO05D004388 6.7e-65 251.5 252 53.2
Pp3c15_22440 Physcomitrium patens HOM05D003501 ORTHO05D004388 7.4e-64 248.1 250 50.8
CBR_g11105 Chara braunii HOM05D003501 ORTHO05D004388 2.8e-63 246.1 252 52.0
Ca_12888_v3 Cicer arietinum L. HOM05D003501 ORTHO05D004388 4.8e-63 245.4 250 52.8
CDE01G0277 Ceratophyllum demersum HOM05D003501 ORTHO05D004388 6.2e-63 245.0 252 52.4
unitig_21.g20948 Utricularia gibba HOM05D003501 ORTHO05D004388 3.2e-59 232.6 250 50.8
Nitab4.5_0010866g0010 Nicotiana tabacum HOM05D003501 ORTHO05D004388 1.3e-57 227.3 250 50.0
Thhalv10029476m.g Eutrema salsugineum HOM05D003501 ORTHO05D004388 2.3e-57 226.5 232 48.7
CAN.G953.11 Capsicum annuum HOM05D003501 ORTHO05D004388 3.0e-57 226.1 193 61.1
AagrBONN_evm.TU.Sc2ySwM_368.3338 Anthoceros agrestis HOM05D003501 ORTHO05D004388 1.4e-54 217.2 280 43.2
Cre09.g400367 Chlamydomonas reinhardtii HOM05D003501 ORTHO05D004388 3.8e-52 209.1 246 47.2
SalBow1G0615 Salvia bowleyana HOM05D003501 ORTHO05D004388 9.3e-51 204.5 251 48.2
SalBow8G4485 Salvia bowleyana HOM05D003501 ORTHO05D004388 4.6e-50 202.2 211 52.6
EL10Ac6g13118 Beta vulgaris HOM05D003501 ORTHO05D004388 3.9e-49 199.1 250 45.2
PGSC0003DMG400006605 Solanum tuberosum HOM05D003501 ORTHO05D004388 6.3e-47 191.8 152 63.8
Prupe.6G111200 Prunus persica HOM05D003501 ORTHO05D004388 8.2e-47 191.4 256 42.2
Phvul.002G299004 Phaseolus vulgaris HOM05D003501 ORTHO05D004388 5.3e-46 188.7 166 55.4
SMO361G0623 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 2.2e-44 183.3 210 47.1
Nitab4.5_0005797g0050 Nicotiana tabacum HOM05D003501 ORTHO05D004388 4.2e-43 179.1 186 52.2
CARHR191430 Cardamine hirsuta HOM05D003501 ORTHO05D004388 5.1e-41 172.2 153 55.6
Actinidia15653 Actinidia chinensis HOM05D003501 ORTHO05D004388 2.8e-39 166.4 119 67.2
CARHR072400 Cardamine hirsuta HOM05D003501 ORTHO05D004388 2.9e-36 156.4 149 52.3
PRCOL_00006339 Prasinoderma coloniale HOM05D003501 ORTHO05D004388 3.2e-35 152.9 254 36.2
ATR0097G041 Amborella trichopoda HOM05D003501 ORTHO05D004388 7.9e-34 148.3 161 49.7
MCO16G220 Micromonas commoda HOM05D003501 ORTHO05D004388 1.4e-33 147.5 188 41.5
Haze_27241 Corylus avellana HOM05D003501 ORTHO05D004388 1.1e-30 137.9 243 36.2
arahy.Tifrunner.gnm1.ann1.3N5Q80 Arachis hypogaea HOM05D003501 ORTHO05D004388 7.7e-29 131.7 119 55.5
SMO112G0124 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 1.5e-27 127.5 190 38.9
SMO201G0018 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 7.2e-27 125.2 196 38.3
HPP92_000027 Vanilla planifolia HOM05D003501 ORTHO05D004388 9.4e-27 124.8 129 53.5
SMO364G0671 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 4.7e-26 122.5 123 50.4
SMO004G0007 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 3.3e-24 116.3 111 51.4
HPP92_000050 Vanilla planifolia HOM05D003501 ORTHO05D004388 2.8e-23 113.2 135 47.4
EL10As8g23847 Beta vulgaris HOM05D003501 ORTHO05D004388 1.4e-22 110.9 146 45.2
Prupe.6G112100 Prunus persica HOM05D003501 ORTHO05D004388 3.5e-21 106.3 86 58.1
SMO114G0139 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 7.2e-19 98.6 178 36.0
MD11G1147100 Malus domestica HOM05D003501 ORTHO05D004388 1.4e-17 94.4 70 58.6
SMO265G0024 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 1.5e-16 90.9 95 46.3
ECA232G4075 Erigeron canadensis HOM05D003501 ORTHO05D004388 4.4e-16 89.4 105 49.5
Actinidia15652 Actinidia chinensis HOM05D003501 ORTHO05D004388 1.7e-15 87.4 69 59.4
SMO163G0016 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 3.7e-15 86.3 112 42.0
CDE12G0385 Ceratophyllum demersum HOM05D003501 ORTHO05D004388 4.8e-15 85.9 86 52.3
SMO065G0004 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 4.8e-15 85.9 87 48.3
SMO146G0031 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 4.8e-15 85.9 95 45.3
SMO269G0020 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 6.3e-15 85.5 87 48.3
SMO330G0055 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 1.1e-14 84.7 87 48.3
SMO112G0083 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 2.0e-13 80.5 86 46.5
HPP92_000031 Vanilla planifolia HOM05D003501 ORTHO05D004388 3.5e-13 79.7 93 46.2
Cfa022309 Carpinus fangiana HOM05D003501 ORTHO05D004388 1.1e-11 74.7 249 29.7
HPP92_027915 Vanilla planifolia HOM05D003501 ORTHO05D004388 2.5e-11 73.6 48 70.8
SMO194G0041 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 7.2e-11 72.0 84 40.5
SMO340G0317 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 1.6e-10 70.9 87 43.7
SMO112G0081 Selaginella moellendorffii HOM05D016263 ORTHO05D003616 1.8e-09 67.4 61 54.1
Actinidia06069 Actinidia chinensis HOM05D003501 ORTHO05D004388 3.0e-09 66.6 79 46.8
SMO353G0041 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 1.2e-08 64.7 60 53.3
EL10Ac4g08784 Beta vulgaris HOM05D003501 ORTHO05D004388 2.0e-08 63.9 49 63.3
Glyma.07G212600 Glycine max HOM05D003501 ORTHO05D004388 3.4e-08 63.2 43 69.8
Mapoly0071s0005 Marchantia polymorpha HOM05D003501 ORTHO05D018303 5.7e-08 62.4 221 27.6
HPP92_028228 Vanilla planifolia HOM05D003501 ORTHO05D004388 3.7e-07 59.7 34 76.5
HPP92_028030 Vanilla planifolia HOM05D003501 ORTHO05D004388 2.4e-06 57.0 30 80.0
HPP92_000028 Vanilla planifolia HOM05D003501 ORTHO05D004388 7.0e-06 55.5 34 70.6


User provided reference genes

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