Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI00251 Sapria himalayana HOM05D003261 ORTHO05D004230 6.1e-105 384.0 177 100.0
CiPaw.02G081900 Carya illinoinensis HOM05D003261 ORTHO05D004230 6.7e-11 71.6 48 64.6
Eucgr.H01421 Eucalyptus grandis HOM05D002800 ORTHO05D008563 6.7e-11 71.6 33 84.8
Cpa.g.sc16.189 Carica papaya HOM05D003261 ORTHO05D004230 1.5e-10 70.5 48 62.5
CiPaw.01G147300 Carya illinoinensis HOM05D003261 ORTHO05D004230 2.5e-10 69.7 48 64.6
C01p47680 Brassica napus HOM05D003261 ORTHO05D004230 4.3e-10 68.9 143 32.9
Lj7A515T86 Lonicera japonica HOM05D003261 ORTHO05D004230 5.7e-10 68.6 31 87.1
Eucgr.H03935 Eucalyptus grandis HOM05D003261 ORTHO05D004230 9.7e-10 67.8 54 57.4
Haze_01185 Corylus avellana HOM05D003261 ORTHO05D004230 1.3e-09 67.4 48 60.4
Lalb_Chr15g0083461 Lupinus albus HOM05D003261 ORTHO05D004230 1.6e-09 67.0 48 58.3
QL06p009632 Quercus lobata HOM05D003261 ORTHO05D004230 2.2e-09 66.6 47 59.6
Actinidia19581 Actinidia chinensis HOM05D003261 ORTHO05D004230 2.8e-09 66.2 32 78.1
Medtr2g436510 Medicago truncatula HOM05D003261 ORTHO05D004230 2.8e-09 66.2 48 60.4
Phvul.009G249100 Phaseolus vulgaris HOM05D003261 ORTHO05D004230 2.8e-09 66.2 47 59.6
MSTRG.20825 Avicennia marina HOM05D003261 ORTHO05D004230 3.7e-09 65.9 31 77.4
BolC1t04740H Brassica oleracea HOM05D003261 ORTHO05D004230 3.7e-09 65.9 94 38.3
Thhalv10025068m.g Eutrema salsugineum HOM05D003261 ORTHO05D004230 4.8e-09 65.5 36 72.2
vmacro08167 Vaccinium macrocarpon HOM05D003261 ORTHO05D004230 4.8e-09 65.5 31 80.6
Ca_01925_v3 Cicer arietinum L. HOM05D003261 ORTHO05D004230 6.3e-09 65.1 48 58.3
Nn4g25790 Nelumbo nucifera HOM05D003261 ORTHO05D004230 6.3e-09 65.1 31 83.9
PGR004G2696 Punica granatum HOM05D003261 ORTHO05D004230 6.3e-09 65.1 31 80.6
Sp7g14350 Schrenkiella parvula HOM05D003261 ORTHO05D004230 6.3e-09 65.1 36 72.2
BcaC06g33437 Brassica carinata HOM05D003261 ORTHO05D004230 8.2e-09 64.7 36 72.2
A03p49450 Brassica napus HOM05D003261 ORTHO05D004230 8.2e-09 64.7 36 72.2
C07p47500 Brassica napus HOM05D003261 ORTHO05D004230 8.2e-09 64.7 36 72.2
BolC7t45277H Brassica oleracea HOM05D003261 ORTHO05D004230 8.2e-09 64.7 36 72.2
BraA03t14046Z Brassica rapa HOM05D003261 ORTHO05D004230 8.2e-09 64.7 36 72.2
Glyma.15G149300 Glycine max HOM05D003261 ORTHO05D004230 8.2e-09 64.7 47 59.6
Peaxi162Scf00089g00028 Petunia axillaris HOM05D003261 ORTHO05D004230 8.2e-09 64.7 55 56.4
Potri.010G012800 Populus trichocarpa HOM05D003261 ORTHO05D004230 8.2e-09 64.7 38 71.1
Rhsim06G0116500 Rhododendron simsii HOM05D003261 ORTHO05D004230 8.2e-09 64.7 47 57.4
unitig_22.g5357 Utricularia gibba HOM05D003261 ORTHO05D004230 8.2e-09 64.7 31 80.6
VMungo1309G2776 Vigna mungo HOM05D003261 ORTHO05D004230 8.2e-09 64.7 47 59.6
CARHR290440 Cardamine hirsuta HOM05D003261 ORTHO05D004230 1.1e-08 64.3 36 69.4
ECA234G0824 Erigeron canadensis HOM05D003261 ORTHO05D004230 1.1e-08 64.3 31 80.6
SalBow3G0655 Salvia bowleyana HOM05D003261 ORTHO05D004230 1.1e-08 64.3 31 80.6
Atru.chr4.2874 Acer truncatum HOM05D003261 ORTHO05D004230 1.4e-08 63.9 38 65.8
Glyma.09G043800 Glycine max HOM05D003261 ORTHO05D004230 1.4e-08 63.9 31 80.6
Nn3g21489 Nelumbo nucifera HOM05D003261 ORTHO05D004230 1.4e-08 63.9 31 83.9
Sc19g0005390 Simmondsia chinensis HOM05D003261 ORTHO05D004230 1.4e-08 63.9 31 80.6
THA.LOC104820293 Tarenaya hassleriana HOM05D003261 ORTHO05D004230 1.4e-08 63.9 31 80.6
THA.LOC104821781 Tarenaya hassleriana HOM05D003261 ORTHO05D004230 1.4e-08 63.9 31 80.6
TWI09G1311 Tripterygium wilfordii HOM05D003261 ORTHO05D004230 1.4e-08 63.9 32 81.2
AL7G39370 Arabidopsis lyrata HOM05D003261 ORTHO05D004230 1.8e-08 63.5 36 69.4
AT4G15900 Arabidopsis thaliana HOM05D003261 ORTHO05D004230 1.8e-08 63.5 36 69.4
BcaC06g32973 Brassica carinata HOM05D003261 ORTHO05D004230 1.8e-08 63.5 32 78.1
Carub.0007s2576 Capsella rubella HOM05D003261 ORTHO05D004230 1.8e-08 63.5 36 69.4
CDE08G1027 Ceratophyllum demersum HOM05D003261 ORTHO05D004230 1.8e-08 63.5 31 80.6
Psat1g155040 Pisum sativum HOM05D003261 ORTHO05D004230 1.8e-08 63.5 38 68.4
Sabra10G0008000 Salix brachista HOM05D003261 ORTHO05D004230 1.8e-08 63.5 31 80.6
Aa31LG10G6240 Aethionema arabicum HOM05D003261 ORTHO05D004230 2.4e-08 63.2 31 80.6
BcaNung00239 Brassica carinata HOM05D003261 ORTHO05D004230 2.4e-08 63.2 32 78.1
CSS0009030 Camellia sinensis var. sinensis HOM05D003261 ORTHO05D004230 2.4e-08 63.2 31 77.4
CSS0013014 Camellia sinensis var. sinensis HOM05D003261 ORTHO05D004230 2.4e-08 63.2 31 77.4
Lj6g0023887 Lotus japonicus HOM05D003261 ORTHO05D004230 2.4e-08 63.2 31 80.6
Nitab4.5_0003111g0030 Nicotiana tabacum HOM05D003261 ORTHO05D004230 2.4e-08 63.2 31 77.4
unitig_8.g3803 Utricularia gibba HOM05D003261 ORTHO05D004230 2.4e-08 63.2 31 77.4
GSVIVG01035143001 Vitis vinifera HOM05D003261 ORTHO05D004230 2.4e-08 63.2 31 77.4
BraA01t03826Z Brassica rapa HOM05D003261 ORTHO05D004230 3.1e-08 62.8 70 45.7
Cc02_g37840 Coffea canephora HOM05D003261 ORTHO05D004230 3.1e-08 62.8 31 74.2
Dinv29761 Davidia involucrata HOM05D003261 ORTHO05D004230 3.1e-08 62.8 31 77.4
Migut.B01741 Erythranthe guttata HOM05D003261 ORTHO05D004230 3.1e-08 62.8 31 74.2
CDE09G0842 Ceratophyllum demersum HOM05D003261 ORTHO05D004230 4.1e-08 62.4 44 63.6
Ciclev10004853m.g Citrus clementina HOM05D003261 ORTHO05D004230 4.1e-08 62.4 38 65.8
HPP92_023226 Vanilla planifolia HOM05D003261 ORTHO05D004230 4.1e-08 62.4 31 80.6
Lsat_1_v5_gn_4_36321 Lactuca sativa HOM05D003261 ORTHO05D004230 5.3e-08 62.0 30 80.0
Peaxi162Scf00056g00015 Petunia axillaris HOM05D003261 ORTHO05D004230 5.3e-08 62.0 31 77.4
TAR623G1368 Trochodendron aralioides HOM05D003261 ORTHO05D004230 5.3e-08 62.0 31 74.2
AL3G29570 Arabidopsis lyrata HOM05D003261 ORTHO05D004230 6.9e-08 61.6 36 63.9
Manes.03G196900 Manihot esculenta HOM05D003261 ORTHO05D004230 6.9e-08 61.6 27 88.9
Ah.08g212490 Amaranthus hybridus HOM05D003261 ORTHO05D004230 9.0e-08 61.2 27 88.9
Aqoxy5G00755 Aquilegia oxysepala HOM05D003261 ORTHO05D004230 9.0e-08 61.2 31 80.6
AT3G16650 Arabidopsis thaliana HOM05D003261 ORTHO05D004230 9.0e-08 61.2 34 67.6
SGA_v2.0_scaffold95G28842 Striga asiatica HOM05D003261 ORTHO05D004230 9.0e-08 61.2 30 76.7
A01p37650 Brassica napus HOM05D003261 ORTHO05D004230 1.2e-07 60.8 31 77.4
CANSAT78G0131 Cannabis sativa HOM05D003261 ORTHO05D004230 1.2e-07 60.8 38 65.8
DCAR_008606 Daucus carota HOM05D003261 ORTHO05D004230 1.2e-07 60.8 31 74.2
HanXRQChr17g0561551 Helianthus annuus HOM05D003261 ORTHO05D004230 1.2e-07 60.8 31 74.2
Hma1.2p1_1185F.1_g264960 Hydrangea macrophylla HOM05D003261 ORTHO05D004230 1.2e-07 60.8 38 68.4
PSO170G4560 Papaver somniferum HOM05D003261 ORTHO05D004230 1.2e-07 60.8 31 77.4
PSO407G0331 Papaver somniferum HOM05D003261 ORTHO05D004230 1.2e-07 60.8 31 77.4
Hund20540 Selenicereus undatus HOM05D003261 ORTHO05D004230 1.2e-07 60.8 27 85.2
CARHR091900 Cardamine hirsuta HOM05D003261 ORTHO05D004230 1.5e-07 60.5 31 74.2
TPR.G22357 Trifolium pratense HOM05D003261 ORTHO05D004230 1.5e-07 60.5 31 77.4
arahy.Tifrunner.gnm1.ann1.9TJ054 Arachis hypogaea HOM05D003261 ORTHO05D004230 2.0e-07 60.1 31 74.2
arahy.Tifrunner.gnm1.ann1.JJQ0MC Arachis hypogaea HOM05D003261 ORTHO05D004230 2.0e-07 60.1 31 74.2
BcaC09g48619 Brassica carinata HOM05D003261 ORTHO05D004230 2.0e-07 60.1 30 76.7
Thhalv10022263m.g Eutrema salsugineum HOM05D003261 ORTHO05D004230 2.0e-07 60.1 31 71.0
Nitab4.5_0001251g0010 Nicotiana tabacum HOM05D003261 ORTHO05D004230 2.0e-07 60.1 31 74.2
Rhsim12G0061000 Rhododendron simsii HOM05D003261 ORTHO05D004230 2.0e-07 60.1 31 71.0
Sp3g14940 Schrenkiella parvula HOM05D003261 ORTHO05D004230 2.0e-07 60.1 32 71.9
ClCG06G005050 Citrullus lanatus HOM05D003261 ORTHO05D004230 3.4e-07 59.3 28 82.1
MELO3C021320.2 Cucumis melo HOM05D003261 ORTHO05D004230 3.4e-07 59.3 28 82.1
CsaV3_6G023930 Cucumis sativus L. HOM05D003261 ORTHO05D004230 3.4e-07 59.3 28 82.1
Sed0025564 Sechium edule HOM05D003261 ORTHO05D004230 3.4e-07 59.3 28 82.1
FvH4_4g18400 Fragaria vesca HOM05D003261 ORTHO05D004230 5.9e-07 58.5 32 71.9
FAN07G1152 Fragaria x ananassa HOM05D003261 ORTHO05D004230 5.9e-07 58.5 32 71.9
FAN12G0468 Fragaria x ananassa HOM05D003261 ORTHO05D004230 5.9e-07 58.5 32 71.9
FAN12G4234 Fragaria x ananassa HOM05D003261 ORTHO05D004230 5.9e-07 58.5 32 71.9
FAN17G0608 Fragaria x ananassa HOM05D003261 ORTHO05D004230 5.9e-07 58.5 32 71.9
RcHm_v2.0_Chr4g0422851 Rosa chinensis HOM05D003261 ORTHO05D004230 5.9e-07 58.5 32 71.9
Solyc01g094480.4 Solanum lycopersicum HOM05D003261 ORTHO05D004230 5.9e-07 58.5 31 67.7
Sopen01g038290 Solanum pennellii HOM05D003261 ORTHO05D004230 5.9e-07 58.5 31 67.7
Os03g0339100 Oryza sativa ssp. japonica HOM05D003261 ORTHO05D004230 7.7e-07 58.2 27 85.2
TPR.G20574 Trifolium pratense HOM05D003261 ORTHO05D004230 7.7e-07 58.2 30 76.7
Prupe.1G134100 Prunus persica HOM05D003261 ORTHO05D004230 1.0e-06 57.8 27 85.2
Gohir.A02G049900 Gossypium hirsutum HOM05D003261 ORTHO05D004230 1.3e-06 57.4 32 65.6
Gohir.A09G238100 Gossypium hirsutum HOM05D003261 ORTHO05D004230 1.3e-06 57.4 32 65.6
Gohir.D02G055000 Gossypium hirsutum HOM05D003261 ORTHO05D004230 1.3e-06 57.4 32 65.6
Gohir.D09G239000 Gossypium hirsutum HOM05D003261 ORTHO05D004230 1.3e-06 57.4 32 65.6
Gorai.005G060900 Gossypium raimondii HOM05D003261 ORTHO05D004230 1.3e-06 57.4 32 65.6
Thecc.04G286600 Theobroma cacao HOM05D003261 ORTHO05D004230 1.3e-06 57.4 32 65.6
CBR_g46444 Chara braunii HOM05D003261 ORTHO05D004230 1.7e-06 57.0 31 64.5
MBI16_g12924_MAGBIO Magnolia biondii HOM05D003261 ORTHO05D004230 1.7e-06 57.0 27 81.5
Duzib151G0067 Durio zibethinus HOM05D003261 ORTHO05D004230 2.2e-06 56.6 38 55.3
Zm00001eb051300 Zea mays HOM05D003261 ORTHO05D004230 2.2e-06 56.6 27 81.5
COL.COLO4_06938 Corchorus olitorius HOM05D003261 ORTHO05D004230 2.9e-06 56.2 32 62.5
COL.COLO4_13845 Corchorus olitorius HOM05D003261 ORTHO05D004230 2.9e-06 56.2 32 62.5
Duzib052G0276 Durio zibethinus HOM05D003261 ORTHO05D004230 2.9e-06 56.2 32 62.5
Pp3c16_8560 Physcomitrium patens HOM05D003261 ORTHO05D004230 2.9e-06 56.2 31 64.5
Pp3c5_15520 Physcomitrium patens HOM05D003261 ORTHO05D004230 2.9e-06 56.2 37 59.5
SEGI_14553 Sequoiadendron giganteum HOM05D003261 ORTHO05D004230 2.9e-06 56.2 31 64.5
PSO017G1819 Papaver somniferum HOM05D003261 ORTHO05D004230 3.8e-06 55.8 31 74.2
Mapoly0016s0006 Marchantia polymorpha HOM05D003261 ORTHO05D004230 5.0e-06 55.5 37 51.4
EL10Ac7g17420 Beta vulgaris HOM05D003261 ORTHO05D004230 6.5e-06 55.1 27 81.5
AUR62034658 Chenopodium quinoa HOM05D003261 ORTHO05D004230 6.5e-06 55.1 27 81.5
ATR0796G128 Amborella trichopoda HOM05D003261 ORTHO05D004230 8.5e-06 54.7 31 61.3


User provided reference genes

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