Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold94G28399 Striga asiatica HOM05D003391 ORTHO05D003123 8.4e-134 480.3 237 100.0
SGA_v2.0_scaffold32G12964 Striga asiatica HOM05D063087 ORTHO05D402570 8.9e-19 98.2 108 54.6
SGA_v2.0_scaffold48G17900 Striga asiatica HOM05D003391 ORTHO05D013251 5.8e-18 95.5 59 84.7
MSTRG.26086 Avicennia marina HOM05D002860 ORTHO05D003123 1.1e-13 81.3 143 37.8
SGA_v2.0_scaffold241G44198 Striga asiatica HOM05D003391 ORTHO05D406693 2.5e-13 80.1 41 90.2
Aqoxy2G00083 Aquilegia oxysepala HOM05D002860 ORTHO05D003123 4.3e-13 79.3 121 38.8
SGA_v2.0_scaffold274G46479 Striga asiatica HOM05D002860 ORTHO05D003123 4.3e-13 79.3 111 41.4
SGA_v2.0_scaffold62G21434 Striga asiatica HOM05D003391 ORTHO05D005563 2.8e-12 76.6 46 89.1
MBI01_g01348_MAGBIO Magnolia biondii HOM05D002860 ORTHO05D003123 4.8e-12 75.9 125 37.6
SGA_v2.0_scaffold94G28421 Striga asiatica HOM05D002860 ORTHO05D003123 8.1e-12 75.1 111 37.8
MSTRG.10840 Avicennia marina HOM05D002860 ORTHO05D003123 1.4e-11 74.3 119 38.7
SGA_v2.0_scaffold40G15505 Striga asiatica HOM05D003391 ORTHO05D400568 1.8e-11 73.9 57 63.2
MSTRG.27454 Avicennia marina HOM05D003391 ORTHO05D005563 2.4e-11 73.6 46 84.8
BraA04t16005Z Brassica rapa HOM05D002860 ORTHO05D003123 3.1e-11 73.2 121 40.5
Duzib093G1712 Durio zibethinus HOM05D002860 ORTHO05D003123 3.1e-11 73.2 104 42.3
MSTRG.9187 Avicennia marina HOM05D003391 ORTHO05D005563 4.0e-11 72.8 46 82.6
Migut.F02007 Erythranthe guttata HOM05D003391 ORTHO05D005563 9.0e-11 71.6 46 82.6
TWI74G1238 Tripterygium wilfordii HOM05D002860 ORTHO05D003123 9.0e-11 71.6 121 38.0
Lj7A654G26 Lonicera japonica HOM05D003391 ORTHO05D005563 1.5e-10 70.9 73 57.5
CiPaw.09G031000 Carya illinoinensis HOM05D002860 ORTHO05D003123 2.0e-10 70.5 121 38.0
Gorai.006G104300 Gossypium raimondii HOM05D002860 ORTHO05D003123 2.0e-10 70.5 154 34.4
unitig_899.g14436 Utricularia gibba HOM05D003391 ORTHO05D005563 2.0e-10 70.5 69 60.9
arahy.Tifrunner.gnm1.ann1.635YAA Arachis hypogaea HOM05D003391 ORTHO05D005563 2.6e-10 70.1 46 80.4
arahy.Tifrunner.gnm1.ann1.QTWQ8J Arachis hypogaea HOM05D003391 ORTHO05D005563 2.6e-10 70.1 46 80.4
Duzib068G0467 Durio zibethinus HOM05D003391 ORTHO05D005563 2.6e-10 70.1 46 80.4
Gohir.A08G160766 Gossypium hirsutum HOM05D003391 ORTHO05D005563 2.6e-10 70.1 46 80.4
Gohir.D08G181000 Gossypium hirsutum HOM05D003391 ORTHO05D005563 2.6e-10 70.1 46 80.4
Gorai.004G190000 Gossypium raimondii HOM05D003391 ORTHO05D005563 2.6e-10 70.1 46 80.4
Rhsim03G0007100 Rhododendron simsii HOM05D002860 ORTHO05D003123 2.6e-10 70.1 117 38.5
CSS0014167 Camellia sinensis var. sinensis HOM05D002860 ORTHO05D003123 3.4e-10 69.7 119 37.0
PGR004G1986 Punica granatum HOM05D002860 ORTHO05D003123 3.4e-10 69.7 131 35.1
Sopen10g031010 Solanum pennellii HOM05D002860 ORTHO05D003123 3.4e-10 69.7 135 33.3
Thecc.03G235800 Theobroma cacao HOM05D003391 ORTHO05D005563 3.4e-10 69.7 46 80.4
COL.COLO4_06714 Corchorus olitorius HOM05D003391 ORTHO05D005563 4.4e-10 69.3 46 78.3
Duzib084G0647 Durio zibethinus HOM05D003391 ORTHO05D005563 4.4e-10 69.3 46 78.3
Duzib106G0036 Durio zibethinus HOM05D002860 ORTHO05D003123 5.8e-10 68.9 121 38.0
Gohir.D09G087800 Gossypium hirsutum HOM05D002860 ORTHO05D003123 5.8e-10 68.9 152 34.2
Hund02122 Selenicereus undatus HOM05D003391 ORTHO05D005563 5.8e-10 68.9 42 85.7
Migut.F01784 Erythranthe guttata HOM05D003391 ORTHO05D005563 7.6e-10 68.6 40 90.0
SalBow4G0334 Salvia bowleyana HOM05D003391 ORTHO05D005563 7.6e-10 68.6 47 83.0
CAN.G466.12 Capsicum annuum HOM05D003391 ORTHO05D005563 9.9e-10 68.2 46 78.3
CAN.G998.14 Capsicum annuum HOM05D003391 ORTHO05D005563 9.9e-10 68.2 46 78.3
Ca_11369_v3 Cicer arietinum L. HOM05D003391 ORTHO05D005563 9.9e-10 68.2 46 78.3
Ca_30786_v3 Cicer arietinum L. HOM05D003391 ORTHO05D005563 9.9e-10 68.2 46 78.3
Gohir.A09G088000 Gossypium hirsutum HOM05D002860 ORTHO05D003123 9.9e-10 68.2 121 38.0
HanXRQChr03g0093781 Helianthus annuus HOM05D003391 ORTHO05D005563 9.9e-10 68.2 46 76.1
HanXRQChr04g0122221 Helianthus annuus HOM05D003391 ORTHO05D005563 9.9e-10 68.2 46 78.3
Lalb_Chr15g0088521 Lupinus albus HOM05D003391 ORTHO05D005563 9.9e-10 68.2 46 78.3
MBI18_g28219_MAGBIO Magnolia biondii HOM05D003391 ORTHO05D005563 9.9e-10 68.2 46 76.1
MBI18_g28220_MAGBIO Magnolia biondii HOM05D003391 ORTHO05D005563 9.9e-10 68.2 46 76.1
Manes.01G037700 Manihot esculenta HOM05D003391 ORTHO05D005563 9.9e-10 68.2 46 78.3
Nitab4.5_0000575g0140 Nicotiana tabacum HOM05D003391 ORTHO05D005563 9.9e-10 68.2 46 78.3
Nitab4.5_0007706g0020 Nicotiana tabacum HOM05D003391 ORTHO05D005563 9.9e-10 68.2 46 78.3
Psat1g171000 Pisum sativum HOM05D003391 ORTHO05D005563 9.9e-10 68.2 46 78.3
Sabra16G0023000 Salix brachista HOM05D003391 ORTHO05D005563 9.9e-10 68.2 46 78.3
Sabra16G0029200 Salix brachista HOM05D003391 ORTHO05D005563 9.9e-10 68.2 46 78.3
Sed0000795 Sechium edule HOM05D002860 ORTHO05D003123 9.9e-10 68.2 117 35.9
Solyc04g049490.3 Solanum lycopersicum HOM05D003391 ORTHO05D005563 9.9e-10 68.2 46 78.3
Sopen04g019460 Solanum pennellii HOM05D003391 ORTHO05D005563 9.9e-10 68.2 46 78.3
PGSC0003DMG402012873 Solanum tuberosum HOM05D003391 ORTHO05D005563 9.9e-10 68.2 46 78.3
TPR.G10474 Trifolium pratense HOM05D003391 ORTHO05D005563 9.9e-10 68.2 46 78.3
TPR.G17612 Trifolium pratense HOM05D002860 ORTHO05D003123 9.9e-10 68.2 133 34.6
AUR62023891 Chenopodium quinoa HOM05D003391 ORTHO05D005563 1.3e-09 67.8 42 83.3
Dinv10208 Davidia involucrata HOM05D003391 ORTHO05D005563 1.3e-09 67.8 46 78.3
ECA236G2623 Erigeron canadensis HOM05D003391 ORTHO05D005563 1.3e-09 67.8 46 78.3
Lj6g0008612 Lotus japonicus HOM05D003391 ORTHO05D005563 1.3e-09 67.8 46 78.3
Potri.016G023000 Populus trichocarpa HOM05D003391 ORTHO05D005563 1.3e-09 67.8 46 76.1
unitig_26.g8903 Utricularia gibba HOM05D002860 ORTHO05D003123 1.3e-09 67.8 118 38.1
GSVIVG01016094001 Vitis vinifera HOM05D003391 ORTHO05D005563 1.3e-09 67.8 46 78.3
EL10Ac9g21140 Beta vulgaris HOM05D003391 ORTHO05D005563 1.7e-09 67.4 46 78.3
Glyma.09G018300 Glycine max HOM05D003391 ORTHO05D005563 1.7e-09 67.4 46 76.1
Os01g0906200 Oryza sativa ssp. japonica HOM05D003391 ORTHO05D005563 1.7e-09 67.4 46 78.3
Phvul.006G134000 Phaseolus vulgaris HOM05D003391 ORTHO05D005563 1.7e-09 67.4 46 76.1
Sed0012933 Sechium edule HOM05D003391 ORTHO05D005563 1.7e-09 67.4 46 76.1
VMungo0540G0836 Vigna mungo HOM05D003391 ORTHO05D005563 1.7e-09 67.4 46 76.1
Ah.01g004390 Amaranthus hybridus HOM05D003391 ORTHO05D005563 2.2e-09 67.0 46 76.1
CANSAT64G0384 Cannabis sativa HOM05D002860 ORTHO05D003123 2.2e-09 67.0 121 37.2
CANSAT64G0651 Cannabis sativa HOM05D003391 ORTHO05D005563 2.2e-09 67.0 46 76.1
Ca_25704_v3 Cicer arietinum L. HOM05D002860 ORTHO05D003123 2.2e-09 67.0 136 32.4
ClCG11G016680 Citrullus lanatus HOM05D003391 ORTHO05D005563 2.2e-09 67.0 46 76.1
Hma1.2p1_0583F.1_g183000 Hydrangea macrophylla HOM05D003391 ORTHO05D005563 2.2e-09 67.0 46 76.1
Lsat_1_v5_gn_3_133361 Lactuca sativa HOM05D003391 ORTHO05D005563 2.2e-09 67.0 46 76.1
Nn7g37683 Nelumbo nucifera HOM05D003391 ORTHO05D005563 2.2e-09 67.0 46 76.1
Psat4g106560 Pisum sativum HOM05D002860 ORTHO05D003123 2.2e-09 67.0 133 33.8
Psat6g129520 Pisum sativum HOM05D002860 ORTHO05D003123 2.2e-09 67.0 133 33.8
Atru.chr8.1087 Acer truncatum HOM05D002860 ORTHO05D003123 2.9e-09 66.6 121 36.4
arahy.Tifrunner.gnm1.ann1.MM6MID Arachis hypogaea HOM05D003391 ORTHO05D005563 2.9e-09 66.6 46 76.1
MELO3C026391.2 Cucumis melo HOM05D003391 ORTHO05D005563 2.9e-09 66.6 46 76.1
CsaV3_4G032190 Cucumis sativus L. HOM05D003391 ORTHO05D005563 2.9e-09 66.6 46 76.1
Dinv04581 Davidia involucrata HOM05D003391 ORTHO05D005563 2.9e-09 66.6 46 76.1
Lalb_Chr18g0057621 Lupinus albus HOM05D003391 ORTHO05D005563 2.9e-09 66.6 46 76.1
MD09G1135000 Malus domestica HOM05D003391 ORTHO05D005563 2.9e-09 66.6 46 78.3
MD17G1124000 Malus domestica HOM05D003391 ORTHO05D005563 2.9e-09 66.6 46 78.3
Prupe.3G191700 Prunus persica HOM05D003391 ORTHO05D005563 2.9e-09 66.6 46 78.3
QL04p065456 Quercus lobata HOM05D003391 ORTHO05D005563 2.9e-09 66.6 46 76.1
CSS0020230 Camellia sinensis var. sinensis HOM05D003391 ORTHO05D005563 3.8e-09 66.2 46 73.9
CSS0023421 Camellia sinensis var. sinensis HOM05D003391 ORTHO05D005563 3.8e-09 66.2 46 73.9
Carub.0001s3957 Capsella rubella HOM05D003391 ORTHO05D005563 3.8e-09 66.2 46 76.1
AUR62022296 Chenopodium quinoa HOM05D003391 ORTHO05D005563 3.8e-09 66.2 46 76.1
Cc06_g16030 Coffea canephora HOM05D002860 ORTHO05D003123 3.8e-09 66.2 123 36.6
Glyma.15G124200 Glycine max HOM05D003391 ORTHO05D005563 3.8e-09 66.2 46 73.9
Cc06_g14340 Coffea canephora HOM05D003391 ORTHO05D005563 4.9e-09 65.9 46 73.9
SalBow6G5077 Salvia bowleyana HOM05D002860 ORTHO05D003123 4.9e-09 65.9 82 43.9
Cpa.g.sc122.39 Carica papaya HOM05D003391 ORTHO05D005563 6.4e-09 65.5 46 73.9
Dinv43930 Davidia involucrata HOM05D002860 ORTHO05D003123 6.4e-09 65.5 110 39.1
Oeu030440.3 Olea europaea HOM05D003391 ORTHO05D005563 6.4e-09 65.5 46 73.9
Sc24g0003350 Simmondsia chinensis HOM05D003391 ORTHO05D005563 6.4e-09 65.5 46 73.9
TWI77G0821 Tripterygium wilfordii HOM05D003391 ORTHO05D005563 6.4e-09 65.5 46 73.9
BcaC02g09976 Brassica carinata HOM05D002860 ORTHO05D003123 8.4e-09 65.1 122 38.5
BcaC02g09979 Brassica carinata HOM05D002860 ORTHO05D003123 8.4e-09 65.1 122 38.5
C04p34400 Brassica napus HOM05D002860 ORTHO05D003123 8.4e-09 65.1 122 38.5
BolC4t25002H Brassica oleracea HOM05D002860 ORTHO05D003123 8.4e-09 65.1 122 38.5
Cfa018226 Carpinus fangiana HOM05D003391 ORTHO05D005563 8.4e-09 65.1 45 75.6
CiPaw.10G102000 Carya illinoinensis HOM05D003391 ORTHO05D005563 8.4e-09 65.1 45 75.6
CDE05G3605 Ceratophyllum demersum HOM05D003391 ORTHO05D005563 8.4e-09 65.1 46 71.7
Eucgr.A02447 Eucalyptus grandis HOM05D002860 ORTHO05D003123 8.4e-09 65.1 128 34.4
Eucgr.L01917 Eucalyptus grandis HOM05D003391 ORTHO05D005563 8.4e-09 65.1 46 71.7
Medtr1g053910 Medicago truncatula HOM05D002860 ORTHO05D003123 8.4e-09 65.1 134 32.8
TWI74G0249 Tripterygium wilfordii HOM05D003391 ORTHO05D005563 8.4e-09 65.1 46 73.9
Atru.chr13.1440 Acer truncatum HOM05D003391 ORTHO05D005563 1.1e-08 64.7 46 71.7
Atru.chr13.1465 Acer truncatum HOM05D003391 ORTHO05D005563 1.1e-08 64.7 46 71.7
Actinidia37789 Actinidia chinensis HOM05D003391 ORTHO05D005563 1.1e-08 64.7 46 71.7
Ciclev10028552m.g Citrus clementina HOM05D003391 ORTHO05D005563 1.1e-08 64.7 46 73.9
ECA240G2134 Erigeron canadensis HOM05D003391 ORTHO05D005563 1.1e-08 64.7 46 71.7
BcaC07g40169 Brassica carinata HOM05D002860 ORTHO05D003123 1.4e-08 64.3 122 38.5
FvH4_6g40130 Fragaria vesca HOM05D003391 ORTHO05D005563 1.4e-08 64.3 46 73.9
FAN05G0705 Fragaria x ananassa HOM05D003391 ORTHO05D005563 1.4e-08 64.3 46 73.9
FAN09G1714 Fragaria x ananassa HOM05D003391 ORTHO05D005563 1.4e-08 64.3 46 73.9
Oeu033843.4 Olea europaea HOM05D003391 ORTHO05D005563 1.4e-08 64.3 46 71.7
RcHm_v2.0_Chr2g0154761 Rosa chinensis HOM05D003391 ORTHO05D005563 1.4e-08 64.3 46 73.9
THA.LOC104809239 Tarenaya hassleriana HOM05D003391 ORTHO05D005563 1.4e-08 64.3 46 73.9
TAR626G0891 Trochodendron aralioides HOM05D003391 ORTHO05D005563 1.4e-08 64.3 46 73.9
Medtr2g028270 Medicago truncatula HOM05D003391 ORTHO05D005563 1.9e-08 63.9 46 71.7
SGA_v2.0_scaffold305G47958 Striga asiatica HOM05D000046 ORTHO05D405780 1.9e-08 63.9 53 67.9
BcaB02g11154 Brassica carinata HOM05D003391 ORTHO05D005563 2.4e-08 63.5 46 71.7
BcaC01g01234 Brassica carinata HOM05D003391 ORTHO05D005563 2.4e-08 63.5 46 71.7
BcaC05g27411 Brassica carinata HOM05D003391 ORTHO05D005563 2.4e-08 63.5 46 71.7
A05p20100 Brassica napus HOM05D003391 ORTHO05D005563 2.4e-08 63.5 46 71.7
C05p33590 Brassica napus HOM05D003391 ORTHO05D005563 2.4e-08 63.5 46 71.7
BolC5t32086H Brassica oleracea HOM05D003391 ORTHO05D005563 2.4e-08 63.5 46 71.7
BraA05t20918Z Brassica rapa HOM05D003391 ORTHO05D005563 2.4e-08 63.5 46 71.7
Sp1g37350 Schrenkiella parvula HOM05D003391 ORTHO05D005563 2.4e-08 63.5 46 71.7
HPP92_006005 Vanilla planifolia HOM05D003391 ORTHO05D005563 2.4e-08 63.5 46 69.6
ATR1098G037 Amborella trichopoda HOM05D003391 ORTHO05D005563 3.2e-08 63.2 46 71.7
AL1G58160 Arabidopsis lyrata HOM05D003391 ORTHO05D005563 3.2e-08 63.2 46 71.7
AT1G50500 Arabidopsis thaliana HOM05D003391 ORTHO05D005563 3.2e-08 63.2 46 71.7
FAN14G1902 Fragaria x ananassa HOM05D003391 ORTHO05D005563 3.2e-08 63.2 46 73.9
PGR042G2316 Punica granatum HOM05D003391 ORTHO05D005563 3.2e-08 63.2 46 69.6
Zm00001eb144220 Zea mays HOM05D003391 ORTHO05D005563 3.2e-08 63.2 46 71.7
FAN02G4219 Fragaria x ananassa HOM05D003391 ORTHO05D005563 4.2e-08 62.8 46 73.9
Sc25g0005080 Simmondsia chinensis HOM05D002860 ORTHO05D003123 4.2e-08 62.8 124 38.7
Lj5g0001504 Lotus japonicus HOM05D002860 ORTHO05D003123 5.4e-08 62.4 124 31.5
vmacro13793 Vaccinium macrocarpon HOM05D003391 ORTHO05D005563 5.4e-08 62.4 46 67.4
SHI21339 Sapria himalayana HOM05D003391 ORTHO05D005563 7.1e-08 62.0 72 50.0
DCAR_003077 Daucus carota HOM05D003391 ORTHO05D005563 9.3e-08 61.6 46 67.4
Lsat_1_v5_gn_7_7561 Lactuca sativa HOM05D003391 ORTHO05D005563 9.3e-08 61.6 49 73.5
C03p89680 Brassica napus HOM05D003391 ORTHO05D005563 1.2e-07 61.2 46 69.6
PSO675G3205 Papaver somniferum HOM05D003391 ORTHO05D005563 1.2e-07 61.2 46 69.6
Aa31LG10G3790 Aethionema arabicum HOM05D003391 ORTHO05D005563 1.6e-07 60.8 46 69.6
Lalb_Chr09g0326991 Lupinus albus HOM05D002860 ORTHO05D003123 1.6e-07 60.8 82 41.5
Sabra16G0050800 Salix brachista HOM05D002860 ORTHO05D003123 2.1e-07 60.5 125 36.0
PGSC0003DMG400006313 Solanum tuberosum HOM05D002860 ORTHO05D003123 2.1e-07 60.5 113 38.1
ATR0605G156 Amborella trichopoda HOM05D002860 ORTHO05D003123 2.7e-07 60.1 124 32.3
PSO541G1880 Papaver somniferum HOM05D003391 ORTHO05D005563 2.7e-07 60.1 47 70.2
Rhsim05G0168000 Rhododendron simsii HOM05D003391 ORTHO05D005563 2.7e-07 60.1 74 52.7
Aqoxy3G00251 Aquilegia oxysepala HOM05D003391 ORTHO05D005563 6.0e-07 58.9 47 68.1
Zm00001eb316810 Zea mays HOM05D002860 ORTHO05D003123 6.0e-07 58.9 126 31.0
Lalb_Chr16g0383041 Lupinus albus HOM05D002860 ORTHO05D003123 7.9e-07 58.5 142 31.7
SEGI_03483 Sequoiadendron giganteum HOM05D003391 ORTHO05D005563 1.0e-06 58.2 46 63.0
SEGI_21663 Sequoiadendron giganteum HOM05D003391 ORTHO05D005563 1.0e-06 58.2 46 63.0
Os08g0510800 Oryza sativa ssp. japonica HOM05D002860 ORTHO05D003123 1.3e-06 57.8 112 30.4
Zm00001eb101950 Zea mays HOM05D002860 ORTHO05D003123 1.3e-06 57.8 126 31.0
SMO196G0220 Selaginella moellendorffii HOM05D003391 ORTHO05D005563 2.3e-06 57.0 46 60.9
Pp3c8_8190 Physcomitrium patens HOM05D003391 ORTHO05D005563 5.1e-06 55.8 46 60.9
BolC3t21285H Brassica oleracea HOM05D003391 ORTHO05D005563 6.6e-06 55.5 72 47.2
Mapoly0061s0112 Marchantia polymorpha HOM05D002860 ORTHO05D003123 6.6e-06 55.5 117 30.8


User provided reference genes

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