Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold88G27230 Striga asiatica HOM05D005984 ORTHO05D007754 4.3e-213 744.6 426 100.0
MSTRG.431 Avicennia marina HOM05D005984 ORTHO05D007754 2.7e-175 619.0 377 83.3
Migut.E00699 Erythranthe guttata HOM05D005984 ORTHO05D007754 3.9e-166 588.6 428 72.7
unitig_8.g2892 Utricularia gibba HOM05D005984 ORTHO05D007754 3.9e-166 588.6 372 80.4
Cpa.g.sc44.38 Carica papaya HOM05D005984 ORTHO05D007754 9.7e-165 583.9 376 77.1
Lsat_1_v5_gn_3_35480 Lactuca sativa HOM05D005984 ORTHO05D007754 1.3e-164 583.6 377 82.8
ECA246G1868 Erigeron canadensis HOM05D005984 ORTHO05D007754 8.2e-164 580.9 378 82.0
Ca_19021_v3 Cicer arietinum L. HOM05D005984 ORTHO05D007754 1.4e-163 580.1 365 78.6
TWI53G1952 Tripterygium wilfordii HOM05D005984 ORTHO05D007754 2.4e-163 579.3 378 76.7
Dinv11718 Davidia involucrata HOM05D005984 ORTHO05D007754 5.3e-163 578.2 364 83.8
Sopen02g003530 Solanum pennellii HOM05D005984 ORTHO05D007754 1.2e-162 577.0 381 77.2
Cc11_g02280 Coffea canephora HOM05D005984 ORTHO05D007754 1.5e-162 576.6 381 77.2
Gohir.D02G187800 Gossypium hirsutum HOM05D005984 ORTHO05D007754 2.6e-162 575.9 381 75.9
Gorai.005G210500 Gossypium raimondii HOM05D005984 ORTHO05D007754 2.6e-162 575.9 380 76.3
Sabra07G0060100 Salix brachista HOM05D005984 ORTHO05D007754 3.4e-162 575.5 378 76.2
ClCG09G004540 Citrullus lanatus HOM05D005984 ORTHO05D007754 4.5e-162 575.1 376 76.9
CsaV3_7G030600 Cucumis sativus L. HOM05D005984 ORTHO05D007754 5.9e-162 574.7 376 76.6
CAN.G157.24 Capsicum annuum HOM05D005984 ORTHO05D007754 1.0e-161 573.9 380 77.6
Potri.007G071300 Populus trichocarpa HOM05D005984 ORTHO05D007754 1.0e-161 573.9 376 76.6
PGSC0003DMG400002324 Solanum tuberosum HOM05D005984 ORTHO05D007754 1.0e-161 573.9 379 76.8
Actinidia13710 Actinidia chinensis HOM05D005984 ORTHO05D007754 1.3e-161 573.5 374 76.5
Hma1.2p1_0122F.1_g057600 Hydrangea macrophylla HOM05D005984 ORTHO05D007754 1.3e-161 573.5 380 76.1
PGR044G2022 Punica granatum HOM05D005984 ORTHO05D007754 1.3e-161 573.5 364 78.0
Thecc.02G160200 Theobroma cacao HOM05D005984 ORTHO05D007754 1.3e-161 573.5 375 77.3
Gohir.A03G164600 Gossypium hirsutum HOM05D005984 ORTHO05D007754 2.2e-161 572.8 380 76.3
Actinidia38413 Actinidia chinensis HOM05D005984 ORTHO05D007754 2.9e-161 572.4 374 76.5
Manes.04G064200 Manihot esculenta HOM05D005984 ORTHO05D007754 2.9e-161 572.4 364 83.0
SalBow2G1456 Salvia bowleyana HOM05D005984 ORTHO05D007754 2.9e-161 572.4 465 69.2
Glyma.11G100800 Glycine max HOM05D005984 ORTHO05D007754 3.8e-161 572.0 360 78.6
Phvul.011G029800 Phaseolus vulgaris HOM05D005984 ORTHO05D007754 8.5e-161 570.9 359 78.8
VMungo1127G1047 Vigna mungo HOM05D005984 ORTHO05D007754 8.5e-161 570.9 360 78.9
THA.LOC104800911 Tarenaya hassleriana HOM05D005984 ORTHO05D007754 1.9e-160 569.7 364 78.8
EL10Ac9g22946 Beta vulgaris HOM05D005984 ORTHO05D007754 2.5e-160 569.3 365 75.9
DCAR_002576 Daucus carota HOM05D005984 ORTHO05D007754 2.5e-160 569.3 382 76.2
CSS0012805 Camellia sinensis var. sinensis HOM05D005984 ORTHO05D007754 4.2e-160 568.5 374 75.4
Eucgr.J00865 Eucalyptus grandis HOM05D005984 ORTHO05D007754 4.2e-160 568.5 376 80.9
TAR629G1998 Trochodendron aralioides HOM05D005984 ORTHO05D007754 4.2e-160 568.5 364 78.3
Sed0006813 Sechium edule HOM05D005984 ORTHO05D007754 5.5e-160 568.2 377 75.1
Oeu026903.3 Olea europaea HOM05D005984 ORTHO05D007754 9.4e-160 567.4 413 76.3
GSVIVG01012045001 Vitis vinifera HOM05D005984 ORTHO05D007754 9.4e-160 567.4 372 76.1
Glyma.12G026900 Glycine max HOM05D005984 ORTHO05D007754 1.2e-159 567.0 360 77.8
vmacro08597 Vaccinium macrocarpon HOM05D005984 ORTHO05D007754 1.2e-159 567.0 382 79.8
VMungo0647G2306 Vigna mungo HOM05D005984 ORTHO05D007754 1.6e-159 566.6 360 78.3
Zm00001eb271820 Zea mays HOM05D005984 ORTHO05D007754 1.6e-159 566.6 382 75.4
arahy.Tifrunner.gnm1.ann1.0C6YUW Arachis hypogaea HOM05D005984 ORTHO05D007754 3.6e-159 565.5 396 72.7
arahy.Tifrunner.gnm1.ann1.B6F48P Arachis hypogaea HOM05D005984 ORTHO05D007754 4.6e-159 565.1 396 72.7
CiPaw.06G060100 Carya illinoinensis HOM05D005984 ORTHO05D007754 6.1e-159 564.7 374 74.6
Duzib052G0297 Durio zibethinus HOM05D005984 ORTHO05D007754 7.9e-159 564.3 375 74.9
TPR.G32343 Trifolium pratense HOM05D005984 ORTHO05D007754 7.9e-159 564.3 362 77.6
Ciclev10031672m.g Citrus clementina HOM05D005984 ORTHO05D007754 1.0e-158 563.9 375 78.4
Thhalv10004338m.g Eutrema salsugineum HOM05D005984 ORTHO05D007754 1.0e-158 563.9 368 75.8
Psat7g177360 Pisum sativum HOM05D005984 ORTHO05D007754 1.0e-158 563.9 362 77.1
A03p46390 Brassica napus HOM05D005984 ORTHO05D007754 1.4e-158 563.5 366 76.2
C07p44410 Brassica napus HOM05D005984 ORTHO05D007754 1.4e-158 563.5 366 76.2
BolC7t44963H Brassica oleracea HOM05D005984 ORTHO05D007754 1.4e-158 563.5 366 76.2
BraA03t13765Z Brassica rapa HOM05D005984 ORTHO05D007754 1.4e-158 563.5 366 76.2
Lj3A850G95 Lonicera japonica HOM05D005984 ORTHO05D007754 1.4e-158 563.5 402 72.6
Cfa008738 Carpinus fangiana HOM05D005984 ORTHO05D007754 1.8e-158 563.1 364 76.4
AT5G23120 Arabidopsis thaliana HOM05D005984 ORTHO05D007754 3.9e-158 562.0 366 76.2
Lj3g0024041 Lotus japonicus HOM05D005984 ORTHO05D007754 3.9e-158 562.0 346 84.4
ATR0618G114 Amborella trichopoda HOM05D005984 ORTHO05D007754 6.7e-158 561.2 346 80.1
Carub.0006s2091 Capsella rubella HOM05D005984 ORTHO05D007754 6.7e-158 561.2 368 75.5
Manes.11G108100 Manihot esculenta HOM05D005984 ORTHO05D007754 6.7e-158 561.2 356 82.6
Medtr4g075040 Medicago truncatula HOM05D005984 ORTHO05D007754 6.7e-158 561.2 346 79.5
CARHR190410 Cardamine hirsuta HOM05D005984 ORTHO05D007754 1.1e-157 560.5 366 79.8
AL6G34310 Arabidopsis lyrata HOM05D005984 ORTHO05D007754 1.9e-157 559.7 362 80.4
Aqoxy3G04258 Aquilegia oxysepala HOM05D005984 ORTHO05D007754 3.3e-157 558.9 343 79.3
Os06g0729650 Oryza sativa ssp. japonica HOM05D005984 ORTHO05D007754 3.3e-157 558.9 378 75.4
Sed0023953 Sechium edule HOM05D005984 ORTHO05D007754 3.3e-157 558.9 376 78.7
FvH4_4g36890 Fragaria vesca HOM05D005984 ORTHO05D007754 1.7e-156 556.6 381 78.2
MD13G1005900 Malus domestica HOM05D005984 ORTHO05D007754 1.7e-156 556.6 377 73.2
Atru.chr11.1117 Acer truncatum HOM05D005984 ORTHO05D007754 2.8e-156 555.8 375 78.7
RcHm_v2.0_Chr4g0446671 Rosa chinensis HOM05D005984 ORTHO05D007754 3.7e-156 555.4 378 78.0
CDE07G0658 Ceratophyllum demersum HOM05D005984 ORTHO05D007754 6.3e-156 554.7 367 78.7
Lalb_Chr03g0024761 Lupinus albus HOM05D005984 ORTHO05D007754 6.3e-156 554.7 360 81.1
Prupe.1G347100 Prunus persica HOM05D005984 ORTHO05D007754 6.3e-156 554.7 377 78.0
CANSAT56G2432 Cannabis sativa HOM05D005984 ORTHO05D007754 8.2e-156 554.3 373 78.3
AUR62017696 Chenopodium quinoa HOM05D005984 ORTHO05D007754 8.2e-156 554.3 373 78.3
COL.COLO4_19602 Corchorus olitorius HOM05D005984 ORTHO05D007754 8.2e-156 554.3 416 69.7
PSO063G6567 Papaver somniferum HOM05D005984 ORTHO05D007754 8.2e-156 554.3 375 73.9
Sp2g24000 Schrenkiella parvula HOM05D005984 ORTHO05D007754 1.1e-155 553.9 346 82.9
AUR62015232 Chenopodium quinoa HOM05D005984 ORTHO05D007754 1.4e-155 553.5 346 82.7
AUR62015234 Chenopodium quinoa HOM05D005984 ORTHO05D007754 1.4e-155 553.5 346 82.7
FAN12G1392 Fragaria x ananassa HOM05D005984 ORTHO05D007754 1.8e-155 553.1 380 77.9
PSO782G0234 Papaver somniferum HOM05D005984 ORTHO05D007754 1.8e-155 553.1 375 73.6
HPP92_012878 Vanilla planifolia HOM05D005984 ORTHO05D007754 6.9e-155 551.2 372 73.1
QL03p045967 Quercus lobata HOM05D005984 ORTHO05D007754 2.6e-154 549.3 457 63.9
Aa31LG11G2610 Aethionema arabicum HOM05D005984 ORTHO05D007754 1.3e-153 547.0 368 78.0
HanXRQChr17g0544921 Helianthus annuus HOM05D005984 ORTHO05D007754 2.9e-153 545.8 354 82.5
Haze_11755 Corylus avellana HOM05D005984 ORTHO05D007754 1.1e-152 543.9 374 73.5
MD16G1002000 Malus domestica HOM05D005984 ORTHO05D007754 3.2e-152 542.3 374 76.2
Hund08579 Selenicereus undatus HOM05D005984 ORTHO05D007754 4.2e-152 542.0 369 74.0
FAN07G1379 Fragaria x ananassa HOM05D005984 ORTHO05D007754 4.7e-151 538.5 406 72.9
MELO3C023596.2 Cucumis melo HOM05D005984 ORTHO05D007754 1.8e-150 536.6 357 75.6
HanXRQChr06g0171511 Helianthus annuus HOM05D005984 ORTHO05D007754 1.8e-150 536.6 352 81.8
Solyc02g014150.4 Solanum lycopersicum HOM05D005984 ORTHO05D007754 5.7e-149 531.6 358 75.4
Nn3g18651 Nelumbo nucifera HOM05D005984 ORTHO05D007754 1.7e-148 530.0 345 75.9
Rhsim04G0167300 Rhododendron simsii HOM05D005984 ORTHO05D007754 3.7e-148 528.9 377 72.4
Sc10g0006780 Simmondsia chinensis HOM05D005984 ORTHO05D007754 4.1e-147 525.4 338 76.9
Ah.01g001560 Amaranthus hybridus HOM05D005984 ORTHO05D007754 5.3e-147 525.0 355 74.4
SMO347G0352 Selaginella moellendorffii HOM05D005984 ORTHO05D007754 1.1e-144 517.3 373 67.8
Nitab4.5_0000133g0050 Nicotiana tabacum HOM05D005984 ORTHO05D007754 6.1e-143 511.5 528 59.5
Pp3c15_7930 Physcomitrium patens HOM05D005984 ORTHO05D007754 8.8e-142 507.7 379 71.8
Pp3c9_10350 Physcomitrium patens HOM05D005984 ORTHO05D007754 4.1e-139 498.8 379 70.7
Nitab4.5_0006277g0020 Nicotiana tabacum HOM05D005984 ORTHO05D007754 5.9e-138 495.0 560 55.5
Mapoly0020s0149 Marchantia polymorpha HOM05D005984 ORTHO05D007754 1.8e-131 473.4 382 61.3
CDE04G0799 Ceratophyllum demersum HOM05D005984 ORTHO05D007754 1.6e-130 470.3 373 70.0
Peaxi162Scf00363g00317 Petunia axillaris HOM05D005984 ORTHO05D007754 8.5e-129 464.5 503 57.5
CBR_g11122 Chara braunii HOM05D005984 ORTHO05D007754 2.0e-114 416.8 342 66.1
AagrBONN_evm.TU.Sc2ySwM_369.365 Anthoceros agrestis HOM05D005984 ORTHO05D007754 1.4e-110 404.1 350 64.9
FAN17G0887 Fragaria x ananassa HOM05D005984 ORTHO05D007754 9.8e-109 397.9 407 60.2
MCO05G498 Micromonas commoda HOM05D005984 ORTHO05D007754 3.2e-107 392.9 378 56.9
Dinv01185 Davidia involucrata HOM05D005984 ORTHO05D007754 1.2e-103 380.9 222 84.7
Cre06.g273700 Chlamydomonas reinhardtii HOM05D005984 ORTHO05D007754 6.8e-102 375.2 376 56.9
Hma1.2p1_0122F.1_g057590 Hydrangea macrophylla HOM05D005984 ORTHO05D007754 3.3e-96 356.3 228 77.6
PRCOL_00000217 Prasinoderma coloniale HOM05D005984 ORTHO05D007754 9.3e-75 285.0 311 53.1
AagrBONN_evm.TU.Sc2ySwM_368.563 Anthoceros agrestis HOM05D001974 ORTHO05D001995 4.3e-56 223.0 355 41.1
MD15G1106700 Malus domestica HOM05D005984 ORTHO05D007754 4.2e-51 206.5 133 76.7
C09p07860 Brassica napus HOM05D005984 ORTHO05D007754 1.4e-46 191.4 200 55.5
SEGI_34707 Sequoiadendron giganteum HOM05D005984 ORTHO05D007754 2.6e-45 187.2 122 73.0
MD00G1043400 Malus domestica HOM05D005984 ORTHO05D007754 1.3e-39 168.3 111 73.0
BcaB04g19886 Brassica carinata HOM05D005984 ORTHO05D007754 5.5e-35 152.9 230 43.5
HanXRQChr10g0318441 Helianthus annuus HOM05D005984 ORTHO05D007754 1.5e-29 134.8 67 91.0
AUR62024854 Chenopodium quinoa HOM05D005984 ORTHO05D007754 1.5e-27 128.3 73 86.3
arahy.Tifrunner.gnm1.ann1.25R2K9 Arachis hypogaea HOM05D005984 ORTHO05D014444 7.2e-27 125.9 109 61.5
arahy.Tifrunner.gnm1.ann1.B9R6EW Arachis hypogaea HOM05D005984 ORTHO05D014444 1.4e-25 121.7 82 72.0
C09p07870 Brassica napus HOM05D005984 ORTHO05D042888 7.7e-21 105.9 103 55.3
SEGI_27749 Sequoiadendron giganteum HOM05D005984 ORTHO05D007754 2.5e-19 100.9 53 83.0
MBI03_g15323_MAGBIO Magnolia biondii HOM05D002934 ORTHO05D003937 1.4e-14 85.1 47 83.0
BolC9t53702H Brassica oleracea HOM05D005984 ORTHO05D042888 1.2e-13 82.0 65 64.6
Zm00001eb227280 Zea mays HOM05D005984 ORTHO05D007754 1.3e-12 78.6 62 64.5
Glyma.01G000174 Glycine max HOM05D036214 ORTHO05D007754 9.4e-11 72.4 48 72.9
Glyma.06G237300 Glycine max HOM05D005984 ORTHO05D007754 1.4e-09 68.6 70 57.1
Pp3c24_8290 Physcomitrium patens HOM05D013586 ORTHO05D011470 1.4e-09 68.6 46 65.2
SGA_v2.0_scaffold57G20111 Striga asiatica HOM05D005984 ORTHO05D402503 4.4e-08 63.5 39 74.4


User provided reference genes

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