Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold88G27214 Striga asiatica HOM05D004712 ORTHO05D005306 4.2e-80 301.2 143 100.0
Migut.A00161 Erythranthe guttata HOM05D004712 ORTHO05D005306 2.1e-71 272.3 143 88.1
SalBow4G3242 Salvia bowleyana HOM05D004712 ORTHO05D005306 2.6e-69 265.4 142 85.2
Prupe.1G416100 Prunus persica HOM05D004712 ORTHO05D005306 5.0e-65 251.1 142 80.3
Cc08_g10100 Coffea canephora HOM05D004712 ORTHO05D005306 5.5e-64 247.7 143 79.7
GSVIVG01035336001 Vitis vinifera HOM05D004712 ORTHO05D005306 9.4e-64 246.9 143 80.4
HanXRQChr17g0538901 Helianthus annuus HOM05D004712 ORTHO05D005306 1.2e-63 246.5 143 76.9
Hma1.2p1_1266F.1_g271360 Hydrangea macrophylla HOM05D004712 ORTHO05D005306 6.1e-63 244.2 142 78.9
Potri.006G234000 Populus trichocarpa HOM05D004712 ORTHO05D005306 1.0e-62 243.4 143 77.6
Cfa017921 Carpinus fangiana HOM05D004712 ORTHO05D005306 2.3e-62 242.3 141 78.7
QL02p001773 Quercus lobata HOM05D004712 ORTHO05D005306 2.3e-62 242.3 142 79.6
TAR624G0834 Trochodendron aralioides HOM05D004712 ORTHO05D005306 3.0e-62 241.9 143 78.3
Lj5g0015176 Lotus japonicus HOM05D004712 ORTHO05D005306 3.9e-62 241.5 141 78.0
Dinv23416 Davidia involucrata HOM05D004712 ORTHO05D005306 1.1e-61 240.0 143 77.6
Sabra18G0050600 Salix brachista HOM05D004712 ORTHO05D005306 2.0e-61 239.2 143 76.2
Glyma.17G231700 Glycine max HOM05D004712 ORTHO05D005306 2.6e-61 238.8 141 78.0
COL.COLO4_21017 Corchorus olitorius HOM05D004712 ORTHO05D005306 3.3e-61 238.4 139 77.0
Haze_18228 Corylus avellana HOM05D004712 ORTHO05D005306 3.3e-61 238.4 141 77.3
Gohir.A05G044400 Gossypium hirsutum HOM05D004712 ORTHO05D005306 3.3e-61 238.4 139 75.5
CSS0042817 Camellia sinensis var. sinensis HOM05D004712 ORTHO05D005306 5.7e-61 237.7 143 77.6
Potri.018G058900 Populus trichocarpa HOM05D004712 ORTHO05D005306 5.7e-61 237.7 143 76.2
Gohir.D05G046000 Gossypium hirsutum HOM05D004712 ORTHO05D005306 7.4e-61 237.3 139 74.8
CANSAT25G2372 Cannabis sativa HOM05D004712 ORTHO05D005306 9.7e-61 236.9 141 75.2
Sabra06G0182200 Salix brachista HOM05D004712 ORTHO05D005306 9.7e-61 236.9 143 75.5
DCAR_004451 Daucus carota HOM05D004712 ORTHO05D005306 1.3e-60 236.5 143 77.6
Lalb_Chr22g0355941 Lupinus albus HOM05D004712 ORTHO05D005306 1.3e-60 236.5 143 75.5
MD08G1074400 Malus domestica HOM05D004712 ORTHO05D005306 1.3e-60 236.5 141 75.9
CsaV3_2G025770 Cucumis sativus L. HOM05D004712 ORTHO05D005306 1.7e-60 236.1 141 77.3
Manes.16G077100 Manihot esculenta HOM05D004712 ORTHO05D005306 1.7e-60 236.1 143 76.9
Aqoxy7G03946 Aquilegia oxysepala HOM05D004712 ORTHO05D005306 2.2e-60 235.7 143 74.8
Atru.chr7.2032 Acer truncatum HOM05D004712 ORTHO05D005306 2.8e-60 235.3 143 72.7
Eucgr.C00628 Eucalyptus grandis HOM05D004712 ORTHO05D005306 3.7e-60 235.0 141 75.2
MD15G1062100 Malus domestica HOM05D004712 ORTHO05D005306 3.7e-60 235.0 141 75.2
Manes.03G046000 Manihot esculenta HOM05D004712 ORTHO05D005306 4.8e-60 234.6 143 74.1
Thecc.09G050100 Theobroma cacao HOM05D004712 ORTHO05D005306 4.8e-60 234.6 143 74.8
Duzib168G2010 Durio zibethinus HOM05D004712 ORTHO05D005306 6.3e-60 234.2 142 75.4
Peaxi162Scf00840g00117 Petunia axillaris HOM05D004712 ORTHO05D005306 1.1e-59 233.4 139 76.3
Phvul.001G032800 Phaseolus vulgaris HOM05D004712 ORTHO05D005306 1.1e-59 233.4 141 75.9
FAN27G0349 Fragaria x ananassa HOM05D004712 ORTHO05D005306 2.4e-59 232.3 143 74.8
Nitab4.5_0005029g0040 Nicotiana tabacum HOM05D004712 ORTHO05D005306 2.4e-59 232.3 138 76.1
ClCG08G016850 Citrullus lanatus HOM05D004712 ORTHO05D005306 3.1e-59 231.9 141 74.5
FvH4_2g32310 Fragaria vesca HOM05D004712 ORTHO05D005306 4.1e-59 231.5 143 74.8
FAN24G2925 Fragaria x ananassa HOM05D004712 ORTHO05D005306 4.1e-59 231.5 143 74.8
Nn6g35377 Nelumbo nucifera HOM05D004712 ORTHO05D005306 4.1e-59 231.5 143 74.1
TPR.G13042 Trifolium pratense HOM05D004712 ORTHO05D005306 4.1e-59 231.5 143 70.6
CiPaw.15G042700 Carya illinoinensis HOM05D004712 ORTHO05D005306 5.3e-59 231.1 139 75.5
ECA246G0363 Erigeron canadensis HOM05D004712 ORTHO05D005306 7.0e-59 230.7 139 73.4
Glyma.14G091700 Glycine max HOM05D004712 ORTHO05D005306 7.0e-59 230.7 141 76.6
Nitab4.5_0000359g0220 Nicotiana tabacum HOM05D004712 ORTHO05D005306 7.0e-59 230.7 138 76.1
VMungo0647G0552 Vigna mungo HOM05D004712 ORTHO05D005306 7.0e-59 230.7 141 76.6
Ciclev10008867m.g Citrus clementina HOM05D004712 ORTHO05D005306 1.6e-58 229.6 143 72.0
Lsat_1_v5_gn_3_27140 Lactuca sativa HOM05D004712 ORTHO05D005306 1.6e-58 229.6 142 70.4
FAN20G0488 Fragaria x ananassa HOM05D004712 ORTHO05D005306 2.6e-58 228.8 141 74.5
RcHm_v2.0_Chr6g0310381 Rosa chinensis HOM05D004712 ORTHO05D005306 2.6e-58 228.8 143 74.1
AUR62040203 Chenopodium quinoa HOM05D004712 ORTHO05D005306 3.5e-58 228.4 141 74.5
Medtr1g016970 Medicago truncatula HOM05D004712 ORTHO05D005306 3.5e-58 228.4 141 71.6
Actinidia21731 Actinidia chinensis HOM05D004712 ORTHO05D005306 4.5e-58 228.0 139 72.7
FAN15G0413 Fragaria x ananassa HOM05D004712 ORTHO05D005306 4.5e-58 228.0 143 74.1
AUR62009206 Chenopodium quinoa HOM05D004712 ORTHO05D005306 7.7e-58 227.3 141 73.8
Ca_13194_v3 Cicer arietinum L. HOM05D004712 ORTHO05D005306 7.7e-58 227.3 141 71.6
Psat6g019200 Pisum sativum HOM05D004712 ORTHO05D005306 7.7e-58 227.3 141 69.5
Hund03367 Selenicereus undatus HOM05D004712 ORTHO05D005306 2.2e-57 225.7 141 74.5
CARHR115280 Cardamine hirsuta HOM05D004712 ORTHO05D005306 8.5e-57 223.8 144 69.4
Nn6g35381 Nelumbo nucifera HOM05D004712 ORTHO05D005306 8.5e-57 223.8 148 71.6
Solyc08g065880.3 Solanum lycopersicum HOM05D004712 ORTHO05D005306 1.1e-56 223.4 139 73.4
Sopen08g019580 Solanum pennellii HOM05D004712 ORTHO05D005306 1.1e-56 223.4 139 73.4
Aa31LG5G9770 Aethionema arabicum HOM05D004712 ORTHO05D005306 1.5e-56 223.0 139 72.7
Sed0015351 Sechium edule HOM05D004712 ORTHO05D005306 1.9e-56 222.6 141 75.2
PSO210G0832 Papaver somniferum HOM05D004712 ORTHO05D005306 2.5e-56 222.2 141 71.6
THA.LOC104803739 Tarenaya hassleriana HOM05D004712 ORTHO05D005306 2.5e-56 222.2 143 69.9
Dinv30410 Davidia involucrata HOM05D004712 ORTHO05D005306 3.2e-56 221.9 139 72.7
GSVIVG01016906001 Vitis vinifera HOM05D004712 ORTHO05D005306 3.2e-56 221.9 138 73.2
CSS0005003 Camellia sinensis var. sinensis HOM05D004712 ORTHO05D005306 4.2e-56 221.5 139 70.5
TWI63G0904 Tripterygium wilfordii HOM05D004712 ORTHO05D005306 5.5e-56 221.1 141 72.3
Rhsim12G0204300 Rhododendron simsii HOM05D004712 ORTHO05D005306 7.2e-56 220.7 139 71.9
EL10Ac2g03950 Beta vulgaris HOM05D004712 ORTHO05D005306 1.2e-55 219.9 141 70.2
PSO210G7282 Papaver somniferum HOM05D004712 ORTHO05D005306 2.1e-55 219.2 141 70.9
PGR031G0938 Punica granatum HOM05D004712 ORTHO05D005306 2.7e-55 218.8 142 71.1
Sc09g0009600 Simmondsia chinensis HOM05D004712 ORTHO05D005306 2.7e-55 218.8 141 71.6
QL05p017273 Quercus lobata HOM05D004712 ORTHO05D005306 8.0e-55 217.2 138 70.3
Sp4g05810 Schrenkiella parvula HOM05D004712 ORTHO05D005306 8.0e-55 217.2 140 69.3
AT2G25910 Arabidopsis thaliana HOM05D004712 ORTHO05D005306 1.0e-54 216.9 140 68.6
Thhalv10002033m.g Eutrema salsugineum HOM05D004712 ORTHO05D005306 1.0e-54 216.9 139 69.1
arahy.Tifrunner.gnm1.ann1.289CQF Arachis hypogaea HOM05D004712 ORTHO05D005306 1.4e-54 216.5 141 68.8
arahy.Tifrunner.gnm1.ann1.QZ1T53 Arachis hypogaea HOM05D004712 ORTHO05D005306 1.4e-54 216.5 141 68.8
BcaB06g29616 Brassica carinata HOM05D004712 ORTHO05D005306 1.4e-54 216.5 140 68.6
Peaxi162Scf00038g01243 Petunia axillaris HOM05D004712 ORTHO05D005306 1.4e-54 216.5 139 71.9
A04p20130 Brassica napus HOM05D004712 ORTHO05D005306 1.8e-54 216.1 140 68.6
C04p55830 Brassica napus HOM05D004712 ORTHO05D005306 1.8e-54 216.1 140 68.6
BraA04t17594Z Brassica rapa HOM05D004712 ORTHO05D005306 1.8e-54 216.1 140 68.6
Carub.0004s0573 Capsella rubella HOM05D004712 ORTHO05D005306 2.3e-54 215.7 140 68.6
QL05p017569 Quercus lobata HOM05D004712 ORTHO05D005306 2.3e-54 215.7 138 70.3
AL4G17960 Arabidopsis lyrata HOM05D004712 ORTHO05D005306 5.2e-54 214.5 141 69.5
BcaC02g08320 Brassica carinata HOM05D004712 ORTHO05D005306 1.5e-53 213.0 140 67.9
BolC4t27113H Brassica oleracea HOM05D004712 ORTHO05D005306 1.5e-53 213.0 140 67.9
Duzib150G0899 Durio zibethinus HOM05D004712 ORTHO05D005306 3.3e-53 211.8 139 69.8
ATR0789G022 Amborella trichopoda HOM05D004712 ORTHO05D005306 7.5e-53 210.7 139 67.6
CDE06G1081 Ceratophyllum demersum HOM05D004712 ORTHO05D005306 4.8e-52 208.0 141 67.4
PGSC0003DMG401002514 Solanum tuberosum HOM05D004712 ORTHO05D005306 6.3e-52 207.6 139 67.6
Rhsim08G0230100 Rhododendron simsii HOM05D004712 ORTHO05D005306 8.2e-52 207.2 139 68.3
Lj7A695G32 Lonicera japonica HOM05D004712 ORTHO05D005306 1.1e-51 206.8 118 77.1
SEGI_23712 Sequoiadendron giganteum HOM05D004712 ORTHO05D005306 1.4e-51 206.5 139 66.9
Nitab4.5_0005661g0020 Nicotiana tabacum HOM05D004712 ORTHO05D005306 1.8e-51 206.1 139 69.8
Solyc03g121250.3 Solanum lycopersicum HOM05D004712 ORTHO05D005306 1.8e-51 206.1 139 66.9
CAN.G20.6 Capsicum annuum HOM05D004712 ORTHO05D005306 5.3e-51 204.5 118 76.3
Cpa.g.c30793.3 Carica papaya HOM05D004712 ORTHO05D005306 1.6e-50 203.0 117 76.9
MELO3C010771.2 Cucumis melo HOM05D004712 ORTHO05D005306 4.5e-50 201.4 125 72.0
Sopen03g040060 Solanum pennellii HOM05D004712 ORTHO05D005306 7.7e-50 200.7 142 65.5
Zm00001eb159970 Zea mays HOM05D004712 ORTHO05D005306 1.0e-49 200.3 140 67.1
vmacro05273 Vaccinium macrocarpon HOM05D004712 ORTHO05D005306 1.3e-49 199.9 118 77.1
Gohir.D03G057300 Gossypium hirsutum HOM05D004712 ORTHO05D005306 1.1e-48 196.8 138 61.6
HPP92_009150 Vanilla planifolia HOM05D004712 ORTHO05D005306 1.9e-48 196.1 141 61.7
Zm00001eb356940 Zea mays HOM05D004712 ORTHO05D005306 5.5e-48 194.5 140 65.0
AUR62031977 Chenopodium quinoa HOM05D004712 ORTHO05D005306 7.2e-48 194.1 135 62.2
Os01g0566900 Oryza sativa ssp. japonica HOM05D004712 ORTHO05D005306 2.7e-47 192.2 140 62.9
Ah.10g034640 Amaranthus hybridus HOM05D004712 ORTHO05D005306 6.1e-47 191.0 123 70.7
Gohir.A02G116301 Gossypium hirsutum HOM05D004712 ORTHO05D005306 6.1e-47 191.0 138 59.4
vmacro17006 Vaccinium macrocarpon HOM05D004712 ORTHO05D005306 5.7e-45 184.5 117 68.4
Mapoly0072s0029 Marchantia polymorpha HOM05D004712 ORTHO05D005306 4.8e-44 181.4 140 60.7
TWI34G1658 Tripterygium wilfordii HOM05D004712 ORTHO05D005306 8.3e-44 180.6 125 67.2
AUR62040198 Chenopodium quinoa HOM05D004712 ORTHO05D005306 1.4e-43 179.9 120 69.2
AagrBONN_evm.TU.Sc2ySwM_228.3302 Anthoceros agrestis HOM05D004712 ORTHO05D005306 2.4e-43 179.1 139 59.7
MBI04_g12189_MAGBIO Magnolia biondii HOM05D004712 ORTHO05D005306 1.6e-42 176.4 150 59.3
Gorai.009G047400 Gossypium raimondii HOM05D004712 ORTHO05D005306 3.5e-42 175.3 115 67.8
SMO174G0103 Selaginella moellendorffii HOM05D004712 ORTHO05D005306 1.3e-41 173.3 143 55.2
Nitab4.5_0010821g0020 Nicotiana tabacum HOM05D004712 ORTHO05D005306 2.3e-41 172.6 118 66.1
Sopen01g026340 Solanum pennellii HOM05D000014 ORTHO05D005306 1.2e-39 166.8 117 62.4
Pp3c15_8210 Physcomitrium patens HOM05D004712 ORTHO05D005306 2.1e-39 166.0 139 57.6
unitig_32.g10885 Utricularia gibba HOM05D004712 ORTHO05D005306 9.8e-37 157.1 135 57.0
Lj5A50G64 Lonicera japonica HOM05D004712 ORTHO05D005306 6.3e-36 154.5 102 65.7
Glyma.04G087900 Glycine max HOM05D004712 ORTHO05D005306 8.9e-30 134.0 138 52.2
unitig_748.g8268 Utricularia gibba HOM05D004712 ORTHO05D005306 3.4e-29 132.1 117 51.3
Cpa.g.sc131.9 Carica papaya HOM05D004712 ORTHO05D005306 2.9e-20 102.4 62 69.4
Solyc01g060200.3 Solanum lycopersicum HOM05D004712 ORTHO05D005306 3.7e-20 102.1 123 43.9
Cpa.g.sc131.8 Carica papaya HOM05D004712 ORTHO05D005306 1.1e-19 100.5 77 58.4
AUR62022272 Chenopodium quinoa HOM05D004712 ORTHO05D005306 1.9e-16 89.7 58 60.3
COL.COLO4_30564 Corchorus olitorius HOM05D004712 ORTHO05D005306 4.3e-16 88.6 55 72.7
COL.COLO4_30565 Corchorus olitorius HOM05D004712 ORTHO05D005306 2.8e-15 85.9 59 61.0
CAN.G1143.35 Capsicum annuum HOM05D004712 ORTHO05D005306 4.4e-13 78.6 47 72.3
Pp3c9_13080 Physcomitrium patens HOM05D004712 ORTHO05D005306 5.4e-11 71.6 59 59.3
Nn4g24691 Nelumbo nucifera HOM05D004712 ORTHO05D005306 1.7e-09 66.6 41 65.9
EL10Ac9g21163 Beta vulgaris HOM05D004712 ORTHO05D005306 5.1e-09 65.1 78 48.7
MSTRG.22613 Avicennia marina HOM05D004712 ORTHO05D005306 3.3e-08 62.4 56 57.1
ATR0626G141 Amborella trichopoda HOM05D004712 ORTHO05D005306 3.1e-06 55.8 44 65.9


User provided reference genes

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