Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold85G26714 Striga asiatica HOM05D005074 ORTHO05D006853 0.0e+00 1456.0 725 100.0
MSTRG.18991 Avicennia marina HOM05D005074 ORTHO05D006853 3.2e-293 1011.5 758 68.1
Dinv13134 Davidia involucrata HOM05D005074 ORTHO05D006853 1.2e-268 929.9 732 65.0
Sopen09g001080 Solanum pennellii HOM05D005074 ORTHO05D006853 3.1e-264 915.2 733 64.0
Solyc09g005100.4 Solanum lycopersicum HOM05D005074 ORTHO05D006853 2.0e-263 912.5 733 63.7
PGSC0003DMG400006257 Solanum tuberosum HOM05D005074 ORTHO05D006853 2.0e-263 912.5 719 63.6
CAN.G41.5 Capsicum annuum HOM05D005074 ORTHO05D006853 1.0e-262 910.2 725 63.0
Peaxi162Scf01132g00134 Petunia axillaris HOM05D005074 ORTHO05D006853 1.3e-262 909.8 707 64.5
SalBow5G0276 Salvia bowleyana HOM05D005074 ORTHO05D006853 1.7e-262 909.4 733 63.7
QL08p015889 Quercus lobata HOM05D005074 ORTHO05D006853 5.0e-262 907.9 744 62.4
SalBow5G3519 Salvia bowleyana HOM05D005074 ORTHO05D006853 8.5e-262 907.1 733 63.6
Lalb_Chr07g0191391 Lupinus albus HOM05D005074 ORTHO05D006853 1.4e-261 906.4 752 62.2
Nitab4.5_0000195g0210 Nicotiana tabacum HOM05D005074 ORTHO05D006853 4.2e-261 904.8 739 62.2
CSS0047541 Camellia sinensis var. sinensis HOM05D005074 ORTHO05D006853 5.5e-261 904.4 744 63.2
CSS0046053 Camellia sinensis var. sinensis HOM05D005074 ORTHO05D006853 7.2e-261 904.0 744 63.2
Migut.J00131 Erythranthe guttata HOM05D005074 ORTHO05D006853 7.9e-260 900.6 726 64.6
TWI74G0571 Tripterygium wilfordii HOM05D005074 ORTHO05D006853 5.1e-259 897.9 744 62.5
Haze_21033 Corylus avellana HOM05D005074 ORTHO05D006853 1.5e-258 896.3 746 61.8
Nitab4.5_0012964g0020 Nicotiana tabacum HOM05D005074 ORTHO05D006853 3.3e-258 895.2 744 61.3
Cfa017171 Carpinus fangiana HOM05D005074 ORTHO05D006853 1.7e-257 892.9 754 61.1
Hma1.2p1_0501F.1_g167650 Hydrangea macrophylla HOM05D005074 ORTHO05D006853 4.8e-257 891.3 707 64.5
Ciclev10011130m.g Citrus clementina HOM05D005074 ORTHO05D006853 8.2e-257 890.6 742 60.6
Prupe.6G280900 Prunus persica HOM05D005074 ORTHO05D006853 2.4e-256 889.0 736 61.0
Actinidia29087 Actinidia chinensis HOM05D005074 ORTHO05D006853 5.3e-256 887.9 728 62.9
Glyma.01G117800 Glycine max HOM05D005074 ORTHO05D006853 2.0e-255 885.9 749 61.1
TAR633G0154 Trochodendron aralioides HOM05D005074 ORTHO05D006853 2.6e-255 885.6 735 61.8
Lj2C71T3 Lonicera japonica HOM05D005074 ORTHO05D006853 1.0e-254 883.6 708 63.4
Medtr1g024820 Medicago truncatula HOM05D005074 ORTHO05D006853 5.0e-254 881.3 739 61.7
Nn2g10923 Nelumbo nucifera HOM05D005074 ORTHO05D006853 2.5e-253 879.0 716 61.7
MD04G1160300 Malus domestica HOM05D005074 ORTHO05D006853 3.2e-253 878.6 738 60.3
Potri.016G120200 Populus trichocarpa HOM05D005074 ORTHO05D006853 5.5e-253 877.9 746 61.4
RcHm_v2.0_Chr3g0462521 Rosa chinensis HOM05D005074 ORTHO05D006853 5.5e-253 877.9 746 59.5
Psat6g003720 Pisum sativum HOM05D005074 ORTHO05D006853 2.1e-252 875.9 739 60.2
CiPaw.10G158300 Carya illinoinensis HOM05D005074 ORTHO05D006853 2.7e-252 875.5 745 60.7
TPR.G34365 Trifolium pratense HOM05D005074 ORTHO05D006853 3.6e-252 875.2 751 60.2
arahy.Tifrunner.gnm1.ann1.N71AR0 Arachis hypogaea HOM05D005074 ORTHO05D006853 1.0e-251 873.6 741 60.3
Ca_13410_v3 Cicer arietinum L. HOM05D005074 ORTHO05D006853 1.4e-251 873.2 741 60.2
Ca_13419_v3 Cicer arietinum L. HOM05D005074 ORTHO05D006853 1.4e-251 873.2 741 60.2
MBI03_g18944_MAGBIO Magnolia biondii HOM05D005074 ORTHO05D006853 3.0e-251 872.1 763 59.4
VMungo0331G1905 Vigna mungo HOM05D005074 ORTHO05D006853 3.0e-251 872.1 750 60.7
EL10Ac5g12524 Beta vulgaris HOM05D005074 ORTHO05D006853 3.9e-251 871.7 744 60.6
CANSAT35G1267 Cannabis sativa HOM05D005074 ORTHO05D006853 6.7e-251 870.9 743 60.2
Cc06_g01060 Coffea canephora HOM05D005074 ORTHO05D006853 8.8e-251 870.5 773 59.1
Lj5g0028092 Lotus japonicus HOM05D005074 ORTHO05D006853 1.1e-250 870.2 755 61.1
Sabra16G0116100 Salix brachista HOM05D005074 ORTHO05D006853 4.4e-250 868.2 747 60.8
HanXRQChr12g0383191 Helianthus annuus HOM05D005074 ORTHO05D006853 8.2e-249 864.0 712 62.2
THA.LOC104816650 Tarenaya hassleriana HOM05D005074 ORTHO05D006853 1.1e-248 863.6 713 60.6
GSVIVG01003941001 Vitis vinifera HOM05D005074 ORTHO05D006853 2.4e-248 862.4 698 61.6
Rhsim05G0219800 Rhododendron simsii HOM05D005074 ORTHO05D006853 3.1e-248 862.1 758 59.6
AT5G01310 Arabidopsis thaliana HOM05D005074 ORTHO05D006853 1.6e-247 859.8 708 60.9
Phvul.010G073200 Phaseolus vulgaris HOM05D005074 ORTHO05D006853 5.9e-247 857.8 750 60.5
Ah.02g115540 Amaranthus hybridus HOM05D005074 ORTHO05D006853 1.7e-246 856.3 744 59.3
AUR62030501 Chenopodium quinoa HOM05D005074 ORTHO05D006853 2.2e-246 855.9 741 59.4
AL6G10830 Arabidopsis lyrata HOM05D005074 ORTHO05D006853 3.8e-246 855.1 703 61.3
FvH4_6g11090 Fragaria vesca HOM05D005074 ORTHO05D006853 5.0e-246 854.7 748 58.3
PGR031G0257 Punica granatum HOM05D005074 ORTHO05D006853 5.5e-245 851.3 735 59.9
DCAR_006624 Daucus carota HOM05D005074 ORTHO05D006853 9.4e-245 850.5 767 57.9
PSO384G2802 Papaver somniferum HOM05D005074 ORTHO05D006853 2.7e-244 849.0 712 61.4
Sed0022379 Sechium edule HOM05D005074 ORTHO05D006853 8.0e-244 847.4 737 58.5
FAN14G3962 Fragaria x ananassa HOM05D005074 ORTHO05D006853 3.0e-243 845.5 757 57.6
unitig_27.g24848 Utricularia gibba HOM05D005074 ORTHO05D006853 4.0e-243 845.1 725 59.6
Duzib128G0037 Durio zibethinus HOM05D005074 ORTHO05D006853 5.2e-243 844.7 715 60.7
Carub.0006s0050 Capsella rubella HOM05D005074 ORTHO05D006853 6.7e-243 844.3 707 60.7
PSO339G4313 Papaver somniferum HOM05D005074 ORTHO05D006853 6.7e-243 844.3 721 60.7
FAN05G5223 Fragaria x ananassa HOM05D005074 ORTHO05D006853 1.2e-242 843.6 756 58.3
Sp6g40630 Schrenkiella parvula HOM05D005074 ORTHO05D006853 1.5e-242 843.2 708 60.2
FAN02G3586 Fragaria x ananassa HOM05D005074 ORTHO05D006853 6.3e-241 837.8 759 57.0
ClCG10G022350 Citrullus lanatus HOM05D005074 ORTHO05D006853 1.1e-240 837.0 729 58.8
MELO3C009144.2 Cucumis melo HOM05D005074 ORTHO05D006853 5.3e-240 834.7 730 59.0
A10p33710 Brassica napus HOM05D005074 ORTHO05D006853 9.1e-240 833.9 702 60.1
BolC9t60195H Brassica oleracea HOM05D005074 ORTHO05D006853 4.5e-239 831.6 698 60.7
CsaV3_3G033540 Cucumis sativus L. HOM05D005074 ORTHO05D006853 4.5e-239 831.6 731 59.0
C09p74610 Brassica napus HOM05D005074 ORTHO05D006853 1.3e-238 830.1 703 60.3
BraA10t45403Z Brassica rapa HOM05D005074 ORTHO05D006853 2.9e-238 828.9 702 59.8
CARHR211670 Cardamine hirsuta HOM05D005074 ORTHO05D006853 1.1e-237 827.0 710 59.7
Aa31LG1G22940 Aethionema arabicum HOM05D005074 ORTHO05D006853 5.5e-237 824.7 693 60.3
Thhalv10012562m.g Eutrema salsugineum HOM05D005074 ORTHO05D006853 1.6e-236 823.2 754 56.9
Aqoxy4G02460 Aquilegia oxysepala HOM05D005074 ORTHO05D006853 2.7e-236 822.4 799 55.3
Gorai.012G116900 Gossypium raimondii HOM05D005074 ORTHO05D006853 3.0e-235 818.9 733 57.8
Gohir.D04G133000 Gossypium hirsutum HOM05D005074 ORTHO05D006853 8.8e-235 817.4 733 57.8
Gohir.A04G093700 Gossypium hirsutum HOM05D005074 ORTHO05D006853 5.7e-234 814.7 734 58.2
Hund10968 Selenicereus undatus HOM05D005074 ORTHO05D006853 7.5e-234 814.3 718 58.8
Lsat_1_v5_gn_8_100780 Lactuca sativa HOM05D005074 ORTHO05D006853 4.9e-225 785.0 711 56.5
Thecc.05G011500 Theobroma cacao HOM05D005074 ORTHO05D006853 1.1e-221 773.9 993 45.4
AUR62030792 Chenopodium quinoa HOM05D005074 ORTHO05D006853 1.5e-221 773.5 699 57.7
Zm00001eb013510 Zea mays HOM05D005074 ORTHO05D006853 5.8e-218 761.5 760 55.5
BcaC06g31973 Brassica carinata HOM05D005074 ORTHO05D006853 4.6e-215 751.9 702 56.0
ATR0716G066 Amborella trichopoda HOM05D005074 ORTHO05D006853 3.9e-214 748.8 860 47.6
COL.COLO4_14500 Corchorus olitorius HOM05D005074 ORTHO05D006853 1.5e-210 736.9 943 46.1
Atru.chr8.2282 Acer truncatum HOM05D005074 ORTHO05D006853 4.4e-210 735.3 661 58.4
HPP92_025102 Vanilla planifolia HOM05D005074 ORTHO05D006853 1.7e-209 733.4 681 55.7
Eucgr.A00552 Eucalyptus grandis HOM05D005074 ORTHO05D006853 3.1e-203 712.6 632 60.0
Manes.09G106200 Manihot esculenta HOM05D005074 ORTHO05D006853 2.3e-198 696.4 599 59.6
vmacro20302 Vaccinium macrocarpon HOM05D005074 ORTHO05D006853 1.5e-197 693.7 733 53.9
CDE08G0259 Ceratophyllum demersum HOM05D005074 ORTHO05D006853 1.2e-194 684.1 750 50.4
ECA236G3605 Erigeron canadensis HOM05D005074 ORTHO05D006853 3.4e-178 629.4 583 58.0
Hma1.2p1_0501F.1_g167660 Hydrangea macrophylla HOM05D005074 ORTHO05D006853 1.4e-176 624.0 497 65.2
SMO119G0484 Selaginella moellendorffii HOM05D005074 ORTHO05D006853 1.9e-173 613.6 688 48.1
FAN09G4669 Fragaria x ananassa HOM05D005074 ORTHO05D006853 3.7e-172 609.4 595 55.6
Pp3c11_18160 Physcomitrium patens HOM05D005074 ORTHO05D006853 3.7e-164 582.8 775 43.1
Sc22g0002590 Simmondsia chinensis HOM05D005074 ORTHO05D006853 1.7e-161 573.9 535 56.3
Mapoly0120s0055 Marchantia polymorpha HOM05D005074 ORTHO05D006853 7.4e-157 558.5 740 44.6
Cpa.g.sc120.24 Carica papaya HOM05D005074 ORTHO05D006853 1.7e-153 547.4 711 44.9
arahy.Tifrunner.gnm1.ann1.W8IS2K Arachis hypogaea HOM05D005074 ORTHO05D006853 1.7e-132 477.6 385 62.3
Os03g0293400 Oryza sativa ssp. japonica HOM05D005074 ORTHO05D006853 2.6e-125 453.8 389 59.4
Aa31LG1G22950 Aethionema arabicum HOM05D005074 ORTHO05D006853 1.0e-113 415.2 636 39.5
Oeu033574.2 Olea europaea HOM05D005074 ORTHO05D006853 6.1e-111 406.0 686 39.7
AagrBONN_evm.TU.Sc2ySwM_362.194 Anthoceros agrestis HOM05D005074 ORTHO05D006853 5.6e-104 382.9 447 46.8
Aa31LG8G1910 Aethionema arabicum HOM05D005074 ORTHO05D006853 6.4e-100 369.4 464 44.0
Aa31LG1G22960 Aethionema arabicum HOM05D005074 ORTHO05D006853 1.6e-95 354.8 458 42.6
SHI12858 Sapria himalayana HOM05D005074 ORTHO05D006853 9.5e-88 328.9 292 58.2
FAN09G1779 Fragaria x ananassa HOM05D005074 ORTHO05D006853 6.4e-84 316.2 331 53.2
Oeu063389.1 Olea europaea HOM05D005074 ORTHO05D006853 8.9e-78 295.8 205 68.3
FAN09G0145 Fragaria x ananassa HOM05D005074 ORTHO05D006853 3.4e-77 293.9 297 54.5
CBR_g45475 Chara braunii HOM05D005074 ORTHO05D006853 6.6e-73 279.6 1020 26.2
FAN09G0802 Fragaria x ananassa HOM05D005074 ORTHO05D006853 8.1e-71 272.7 259 57.1
RcHm_v2.0_Chr3g0462501 Rosa chinensis HOM05D005074 ORTHO05D006853 1.1e-64 252.3 266 54.5
Cre06.g297904 Chlamydomonas reinhardtii HOM05D005074 ORTHO05D006853 6.7e-57 226.5 689 28.0
Duzib093G1335 Durio zibethinus HOM05D005074 ORTHO05D006853 2.5e-56 224.6 366 39.3
Aa31sc2673G10 Aethionema arabicum HOM05D005074 ORTHO05D006853 2.8e-55 221.1 270 41.5
MD05G1095500 Malus domestica HOM05D005074 ORTHO05D006853 8.1e-55 219.5 160 63.1
MD12G1172800 Malus domestica HOM05D005074 ORTHO05D006853 1.2e-53 215.7 227 52.4
BcaC06g31962 Brassica carinata HOM05D005074 ORTHO05D006853 4.5e-53 213.8 156 62.2
AagrBONN_evm.TU.Sc2ySwM_344.4419 Anthoceros agrestis HOM05D005074 ORTHO05D006853 4.6e-50 203.8 158 61.4
Glyma.U000401 Glycine max HOM05D005074 ORTHO05D006853 8.4e-44 183.0 124 71.0
Ca_06765_v3 Cicer arietinum L. HOM05D005074 ORTHO05D006853 1.8e-30 138.7 207 38.6
Glyma.U000501 Glycine max HOM05D005074 ORTHO05D006853 1.6e-26 125.6 101 62.4
Aa31LG1G22970 Aethionema arabicum HOM05D005074 ORTHO05D006853 3.9e-25 120.9 111 55.9
Rhsim05G0219600 Rhododendron simsii HOM05D005074 ORTHO05D006853 2.6e-24 118.2 258 35.3
Aa31sc1955G20 Aethionema arabicum HOM05D005074 ORTHO05D006853 9.1e-22 109.8 104 52.9
MCO14G225 Micromonas commoda HOM05D005074 ORTHO05D006853 1.2e-21 109.4 217 32.7
Medtr8g092520 Medicago truncatula HOM05D005074 ORTHO05D006853 3.8e-20 104.4 67 76.1
Medtr1g024155 Medicago truncatula HOM05D005074 ORTHO05D006853 2.1e-18 98.6 90 62.2
Aa31LG1G19700 Aethionema arabicum HOM05D005074 ORTHO05D023363 1.7e-12 79.0 66 53.0
PSO675G8941 Papaver somniferum HOM05D005074 ORTHO05D006853 1.7e-12 79.0 123 36.6
Cre05.g239450 Chlamydomonas reinhardtii HOM05D005074 ORTHO05D034455 8.5e-12 76.6 167 31.1
Pp3c2_27000 Physcomitrium patens HOM05D005074 ORTHO05D034455 8.5e-12 76.6 165 27.9
Cfa025975 Carpinus fangiana HOM05D005074 ORTHO05D006853 9.4e-11 73.2 190 32.1
Cre02.g079150 Chlamydomonas reinhardtii HOM05D005074 ORTHO05D034455 1.8e-09 68.9 158 29.7
Hund10966 Selenicereus undatus HOM05D005074 ORTHO05D023363 2.0e-08 65.5 43 58.1
Aa31LG1G19680 Aethionema arabicum HOM05D005074 ORTHO05D006853 4.4e-08 64.3 81 46.9
Aa31sc1955G10 Aethionema arabicum HOM05D005074 ORTHO05D023363 7.5e-08 63.5 45 53.3
Aa31sc2119G10 Aethionema arabicum HOM05D005074 ORTHO05D023363 7.5e-08 63.5 45 53.3
Actinidia11567 Actinidia chinensis HOM05D005074 ORTHO05D006853 2.8e-07 61.6 93 40.9
SHI12859 Sapria himalayana HOM05D005074 ORTHO05D023363 6.3e-07 60.5 37 64.9


User provided reference genes

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