Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold85G26687 Striga asiatica HOM05D005064 ORTHO05D006611 0.0e+00 2222.2 1120 100.0
Migut.J00101 Erythranthe guttata HOM05D005064 ORTHO05D006611 0.0e+00 1365.9 1145 65.4
MSTRG.18977 Avicennia marina HOM05D005064 ORTHO05D006611 0.0e+00 1358.6 1143 64.6
SalBow5G0042 Salvia bowleyana HOM05D005064 ORTHO05D006611 0.0e+00 1254.2 1121 62.0
SalBow5G1296 Salvia bowleyana HOM05D005064 ORTHO05D006611 0.0e+00 1254.2 1121 62.0
Dinv35394 Davidia involucrata HOM05D005064 ORTHO05D006611 2.8e-288 995.7 1140 50.9
CSS0042379 Camellia sinensis var. sinensis HOM05D005064 ORTHO05D006611 3.0e-274 949.1 1175 48.3
Duzib093G0745 Durio zibethinus HOM05D005064 ORTHO05D006611 3.9e-274 948.7 1156 47.1
Lj2C68T2 Lonicera japonica HOM05D005064 ORTHO05D006611 4.3e-273 945.3 1156 48.7
Atru.chr8.2328 Acer truncatum HOM05D005064 ORTHO05D006611 9.7e-273 944.1 1156 47.8
GSVIVG01030280001 Vitis vinifera HOM05D005064 ORTHO05D006611 2.8e-272 942.6 1161 48.6
Manes.09G111200 Manihot esculenta HOM05D005064 ORTHO05D006611 8.2e-272 941.0 1159 47.7
Nitab4.5_0010437g0010 Nicotiana tabacum HOM05D005064 ORTHO05D006611 9.0e-271 937.6 1145 48.1
QL07p034075 Quercus lobata HOM05D005064 ORTHO05D006611 2.5e-268 929.5 1151 47.7
Thecc.05G007600 Theobroma cacao HOM05D005064 ORTHO05D006611 4.8e-264 915.2 1154 46.5
Gorai.012G119100 Gossypium raimondii HOM05D005064 ORTHO05D006611 2.0e-262 909.8 1170 46.1
Cc06_g00810 Coffea canephora HOM05D005064 ORTHO05D006611 1.1e-260 904.0 1175 47.1
Sopen02g008440 Solanum pennellii HOM05D005064 ORTHO05D006611 6.1e-259 898.3 1155 47.1
TWI74G0298 Tripterygium wilfordii HOM05D005064 ORTHO05D006611 3.3e-257 892.5 1160 46.6
Cpa.g.sc5.230 Carica papaya HOM05D005064 ORTHO05D006611 2.2e-253 879.8 1162 47.5
Nn2g11003 Nelumbo nucifera HOM05D005064 ORTHO05D006611 2.3e-250 869.8 1222 45.0
Haze_21075 Corylus avellana HOM05D005064 ORTHO05D006611 1.1e-249 867.5 1194 45.8
vmacro04273 Vaccinium macrocarpon HOM05D005064 ORTHO05D006611 2.6e-249 866.3 1173 46.0
CAN.G989.4 Capsicum annuum HOM05D005064 ORTHO05D006611 2.6e-246 856.3 1124 46.3
Potri.014G189600 Populus trichocarpa HOM05D005064 ORTHO05D006611 5.0e-245 852.0 1212 43.5
Peaxi162Scf00744g00354 Petunia axillaris HOM05D005064 ORTHO05D006611 1.5e-244 850.5 1146 46.2
Ciclev10013403m.g Citrus clementina HOM05D005064 ORTHO05D006611 3.2e-244 849.4 1151 45.4
AT5G01630 Arabidopsis thaliana HOM05D005064 ORTHO05D006611 5.2e-242 842.0 1177 43.6
TAR633G1737 Trochodendron aralioides HOM05D005064 ORTHO05D006611 1.2e-241 840.9 1173 45.0
Sabra14G0144800 Salix brachista HOM05D005064 ORTHO05D006611 5.7e-241 838.6 1209 43.7
CsaV3_3G033440 Cucumis sativus L. HOM05D005064 ORTHO05D006611 3.1e-239 832.8 1158 44.1
Gohir.D04G135300 Gossypium hirsutum HOM05D005064 ORTHO05D006611 7.0e-239 831.6 1008 47.1
Rhsim05G0225400 Rhododendron simsii HOM05D005064 ORTHO05D006611 1.6e-238 830.5 1091 46.8
HanXRQChr15g0486851 Helianthus annuus HOM05D005064 ORTHO05D006611 4.5e-238 828.9 1213 42.9
Sed0013669 Sechium edule HOM05D005064 ORTHO05D006611 1.0e-237 827.8 1155 43.8
Gohir.A04G095400 Gossypium hirsutum HOM05D005064 ORTHO05D006611 2.9e-237 826.2 1001 46.9
ClCG10G022430 Citrullus lanatus HOM05D005064 ORTHO05D006611 1.5e-236 823.9 1085 45.9
AL6G10420 Arabidopsis lyrata HOM05D005064 ORTHO05D006611 4.2e-236 822.4 1172 42.9
CANSAT35G0044 Cannabis sativa HOM05D005064 ORTHO05D006611 7.2e-236 821.6 1161 44.0
MELO3C009135.2 Cucumis melo HOM05D005064 ORTHO05D006611 1.6e-235 820.5 1182 43.3
Prupe.4G287200 Prunus persica HOM05D005064 ORTHO05D006611 3.0e-234 816.2 1171 44.3
THA.LOC104816179 Tarenaya hassleriana HOM05D005064 ORTHO05D006611 3.7e-232 809.3 1193 42.8
Hund25531 Selenicereus undatus HOM05D005064 ORTHO05D006611 1.2e-230 804.3 1180 42.8
Thhalv10012491m.g Eutrema salsugineum HOM05D005064 ORTHO05D006611 3.5e-230 802.7 1186 42.0
MD01G1008700 Malus domestica HOM05D005064 ORTHO05D006611 2.9e-229 799.7 1258 41.6
CARHR211980 Cardamine hirsuta HOM05D005064 ORTHO05D006611 5.0e-229 798.9 1178 41.6
Eucgr.K02953 Eucalyptus grandis HOM05D005064 ORTHO05D006611 3.3e-228 796.2 1169 41.8
Carub.0006s0020 Capsella rubella HOM05D005064 ORTHO05D006611 1.2e-227 794.3 1183 42.0
Lalb_Chr22g0360891 Lupinus albus HOM05D005064 ORTHO05D006611 3.6e-227 792.7 1109 43.9
THA.LOC104798645 Tarenaya hassleriana HOM05D005064 ORTHO05D006611 8.9e-226 788.1 1163 43.0
AUR62030526 Chenopodium quinoa HOM05D005064 ORTHO05D006611 2.6e-225 786.6 1154 42.8
EL10Ac5g12491 Beta vulgaris HOM05D005064 ORTHO05D006611 1.8e-223 780.4 1156 41.9
VMungo0540G1710 Vigna mungo HOM05D005064 ORTHO05D006611 1.8e-223 780.4 1038 45.0
AUR62030766 Chenopodium quinoa HOM05D005064 ORTHO05D006611 4.1e-223 779.2 1158 43.4
Medtr3g083250 Medicago truncatula HOM05D005064 ORTHO05D006611 1.2e-222 777.7 1124 42.3
RcHm_v2.0_Chr3g0484931 Rosa chinensis HOM05D005064 ORTHO05D006611 2.0e-222 776.9 899 49.3
FAN23G3111 Fragaria x ananassa HOM05D005064 ORTHO05D006611 7.8e-222 775.0 1262 41.4
Aa31LG1G23250 Aethionema arabicum HOM05D005064 ORTHO05D006611 1.7e-221 773.9 1185 41.3
Lj6g0012785 Lotus japonicus HOM05D005064 ORTHO05D006611 6.6e-221 771.9 1018 44.6
Ca_16367_v3 Cicer arietinum L. HOM05D005064 ORTHO05D006611 1.5e-220 770.8 1023 43.3
arahy.Tifrunner.gnm1.ann1.XPQW08 Arachis hypogaea HOM05D005064 ORTHO05D006611 4.3e-220 769.2 1116 42.7
ECA234G3016 Erigeron canadensis HOM05D005064 ORTHO05D006611 4.3e-220 769.2 1108 43.1
Psat5g101280 Pisum sativum HOM05D005064 ORTHO05D006611 1.6e-219 767.3 1226 39.8
FvH4_1g25820 Fragaria vesca HOM05D005064 ORTHO05D006611 3.6e-219 766.1 1270 40.1
Aa31sc411G40 Aethionema arabicum HOM05D005064 ORTHO05D006611 1.0e-218 764.6 1175 41.2
arahy.Tifrunner.gnm1.ann1.168PWC Arachis hypogaea HOM05D005064 ORTHO05D006611 1.2e-217 761.1 1114 42.2
Thhalv10027627m.g Eutrema salsugineum HOM05D005064 ORTHO05D006611 2.6e-217 760.0 1145 40.6
COL.COLO4_14461 Corchorus olitorius HOM05D005064 ORTHO05D006611 4.9e-216 755.7 1131 41.1
TPR.G19329 Trifolium pratense HOM05D005064 ORTHO05D006611 8.3e-216 755.0 1267 39.0
FAN19G0240 Fragaria x ananassa HOM05D005064 ORTHO05D006611 9.2e-215 751.5 1306 39.3
Sp7g05130 Schrenkiella parvula HOM05D005064 ORTHO05D006611 2.7e-214 750.0 1151 40.7
BcaB01g06242 Brassica carinata HOM05D005064 ORTHO05D006611 6.0e-214 748.8 1177 40.4
Lsat_1_v5_gn_5_149520 Lactuca sativa HOM05D005064 ORTHO05D006611 8.6e-213 745.0 1127 40.5
AT4G00020 Arabidopsis thaliana HOM05D005064 ORTHO05D006611 4.3e-212 742.7 1186 40.2
PSO339G1571 Papaver somniferum HOM05D005064 ORTHO05D006611 1.2e-209 734.6 1259 39.6
Aqoxy2G00779 Aquilegia oxysepala HOM05D005064 ORTHO05D006611 2.0e-209 733.8 1229 38.5
Glyma.13G010700 Glycine max HOM05D005064 ORTHO05D006611 3.4e-209 733.0 1007 44.2
BraA03t09408Z Brassica rapa HOM05D005064 ORTHO05D006611 9.2e-207 724.9 1251 38.5
BolC6t36909H Brassica oleracea HOM05D005064 ORTHO05D006611 9.5e-204 714.9 1165 40.9
A05p16640 Brassica napus HOM05D005064 ORTHO05D006611 2.1e-203 713.8 1171 40.2
BolC3t12595H Brassica oleracea HOM05D005064 ORTHO05D006611 4.7e-203 712.6 1174 39.2
C06p17140 Brassica napus HOM05D005064 ORTHO05D006611 2.3e-202 710.3 1174 40.2
PSO801G0135 Papaver somniferum HOM05D005064 ORTHO05D006611 4.0e-202 709.5 1283 38.5
A03p00180 Brassica napus HOM05D005064 ORTHO05D006611 6.8e-202 708.8 1153 40.2
CiPaw.09G214500 Carya illinoinensis HOM05D005064 ORTHO05D006611 2.6e-201 706.8 642 57.2
C03p00330 Brassica napus HOM05D005064 ORTHO05D006611 1.2e-198 698.0 1159 39.5
BcaB01g06109 Brassica carinata HOM05D005064 ORTHO05D006611 1.6e-198 697.6 1159 39.6
BcaC08g44292 Brassica carinata HOM05D005064 ORTHO05D006611 3.5e-198 696.4 1182 39.4
Oeu026978.1 Olea europaea HOM05D005064 ORTHO05D006611 3.5e-198 696.4 705 57.2
Ah.12g059020 Amaranthus hybridus HOM05D005064 ORTHO05D006611 1.7e-197 694.1 1085 42.2
BraA05t20569Z Brassica rapa HOM05D005064 ORTHO05D006611 8.6e-197 691.8 1141 40.3
ATR0594G137 Amborella trichopoda HOM05D005064 ORTHO05D006611 3.6e-195 686.4 1147 40.1
FAN28G2142 Fragaria x ananassa HOM05D005064 ORTHO05D006611 7.1e-191 672.2 1264 38.0
Os01g0164800 Oryza sativa ssp. japonica HOM05D005064 ORTHO05D006611 2.4e-186 657.1 1140 38.6
Sp6g40890 Schrenkiella parvula HOM05D005064 ORTHO05D006611 9.3e-183 645.2 683 49.8
DCAR_030962 Daucus carota HOM05D005064 ORTHO05D008158 2.7e-182 643.7 1018 41.1
Zm00001eb419130 Zea mays HOM05D005064 ORTHO05D006611 1.3e-176 624.8 1111 38.1
MBI03_g13049_MAGBIO Magnolia biondii HOM05D005064 ORTHO05D006611 1.4e-175 621.3 635 52.8
HPP92_013842 Vanilla planifolia HOM05D005064 ORTHO05D006611 1.0e-173 615.1 856 43.2
SHI12869 Sapria himalayana HOM05D005064 ORTHO05D006611 1.6e-171 607.8 993 40.6
HPP92_013858 Vanilla planifolia HOM05D005064 ORTHO05D006611 3.0e-165 587.0 649 49.6
BcaB04g17743 Brassica carinata HOM05D005064 ORTHO05D006611 1.1e-164 585.1 1092 38.0
Sc07g0001460 Simmondsia chinensis HOM05D005064 ORTHO05D006611 7.6e-161 572.4 898 42.1
Medtr0191s0030 Medicago truncatula HOM05D005064 ORTHO05D006611 2.9e-160 570.5 852 42.1
Solyc02g050200.2 Solanum lycopersicum HOM05D005064 ORTHO05D006611 9.0e-154 548.9 820 44.3
SEGI_30642 Sequoiadendron giganteum HOM05D005064 ORTHO05D006611 3.8e-152 543.5 1056 35.8
CDE04G0109 Ceratophyllum demersum HOM05D005064 ORTHO05D006611 3.3e-148 530.4 1139 36.0
Medtr6g033115 Medicago truncatula HOM05D005064 ORTHO05D006611 1.9e-143 514.6 633 46.4
Nitab4.5_0001246g0050 Nicotiana tabacum HOM05D005064 ORTHO05D006611 2.1e-142 511.1 695 43.5
unitig_21.g20911 Utricularia gibba HOM05D005064 ORTHO05D006611 1.8e-138 498.0 1062 36.4
FAN26G2490 Fragaria x ananassa HOM05D005064 ORTHO05D006611 2.5e-127 461.1 424 55.7
CSS0001431 Camellia sinensis var. sinensis HOM05D005064 ORTHO05D006611 2.1e-126 458.0 512 50.6
Phvul.006G005800 Phaseolus vulgaris HOM05D005064 ORTHO05D006611 1.5e-119 435.3 710 41.8
Nitab4.5_0021252g0010 Nicotiana tabacum HOM05D005064 ORTHO05D006611 4.9e-107 393.7 734 40.5
Oeu027330.4 Olea europaea HOM05D005064 ORTHO05D006611 1.1e-106 392.5 317 64.4
Mapoly0045s0096 Marchantia polymorpha HOM05D005064 ORTHO05D006611 6.6e-104 383.3 698 38.1
Solyc02g050210.2 Solanum lycopersicum HOM05D005064 ORTHO05D006611 7.3e-95 353.2 342 54.1
AagrBONN_evm.TU.Sc2ySwM_362.1800 Anthoceros agrestis HOM05D005064 ORTHO05D006611 1.8e-93 348.6 1116 28.2
Haze_21131 Corylus avellana HOM05D005064 ORTHO05D006611 1.5e-87 328.9 949 31.8
Haze_21134 Corylus avellana HOM05D005064 ORTHO05D006611 4.3e-87 327.4 949 31.7
SEGI_27109 Sequoiadendron giganteum HOM05D005064 ORTHO05D006611 6.8e-85 320.1 750 34.1
Phvul.L001612 Phaseolus vulgaris HOM05D005064 ORTHO05D006611 7.8e-81 306.6 303 51.5
Nitab4.5_0006212g0010 Nicotiana tabacum HOM05D005064 ORTHO05D006611 1.5e-76 292.4 282 52.5
TPR.G18982 Trifolium pratense HOM05D005064 ORTHO05D006611 2.3e-72 278.5 271 47.6
CBR_g19766 Chara braunii HOM05D005064 ORTHO05D000048 3.8e-59 234.6 402 35.3
SEGI_19397 Sequoiadendron giganteum HOM05D005064 ORTHO05D006611 1.4e-58 232.6 355 38.3
CiPaw.09G214600 Carya illinoinensis HOM05D005064 ORTHO05D006611 9.7e-39 166.8 480 32.5
CSS0019886 Camellia sinensis var. sinensis HOM05D005064 ORTHO05D006611 7.9e-33 147.1 627 28.1
MCO02G178 Micromonas commoda HOM05D005064 ORTHO05D006611 1.7e-30 139.4 580 26.0
CAN.G989.5 Capsicum annuum HOM05D005064 ORTHO05D000001 5.9e-28 131.0 290 32.4
CBR_g19769 Chara braunii HOM05D005064 ORTHO05D006611 1.3e-27 129.8 299 27.8
Cre13.g566900 Chlamydomonas reinhardtii HOM05D005064 ORTHO05D006611 2.4e-21 109.0 266 31.2
Ah.11g042510 Amaranthus hybridus HOM05D005064 ORTHO05D006611 1.3e-11 76.6 292 30.8
DCAR_028424 Daucus carota HOM05D005064 ORTHO05D006611 1.3e-11 76.6 124 39.5
Sabra16G0120100 Salix brachista HOM05D005064 ORTHO05D050424 2.0e-07 62.8 50 56.0


User provided reference genes

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