Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold84G26546 Striga asiatica HOM05D004298 ORTHO05D006236 3.5e-247 857.8 431 100.0
SGA_v2.0_scaffold2G00894 Striga asiatica HOM05D004298 ORTHO05D006236 2.1e-143 513.1 426 67.8
Cpa.g.sc216.13 Carica papaya HOM05D004298 ORTHO05D006236 2.1e-138 496.5 433 62.8
Thecc.09G340000 Theobroma cacao HOM05D004298 ORTHO05D006236 6.0e-138 495.0 433 62.6
CiPaw.13G112600 Carya illinoinensis HOM05D004298 ORTHO05D006236 1.0e-137 494.2 433 62.8
Gohir.D08G214700 Gossypium hirsutum HOM05D004298 ORTHO05D006236 1.0e-137 494.2 433 62.6
Gorai.004G228600 Gossypium raimondii HOM05D004298 ORTHO05D006236 3.0e-137 492.7 433 62.6
Manes.11G144700 Manihot esculenta HOM05D004298 ORTHO05D006236 3.0e-137 492.7 433 62.6
MSTRG.17806 Avicennia marina HOM05D004298 ORTHO05D006236 5.1e-137 491.9 433 63.0
Cc01_g11160 Coffea canephora HOM05D004298 ORTHO05D006236 8.6e-137 491.1 424 63.7
Migut.N02606 Erythranthe guttata HOM05D004298 ORTHO05D006236 1.1e-136 490.7 434 63.1
Oeu059093.1 Olea europaea HOM05D004298 ORTHO05D006236 1.9e-136 490.0 433 62.8
SalBow3G4399 Salvia bowleyana HOM05D004298 ORTHO05D006236 1.9e-136 490.0 433 62.4
Oeu002865.1 Olea europaea HOM05D004298 ORTHO05D006236 2.5e-136 489.6 434 62.4
CiPaw.14G080300 Carya illinoinensis HOM05D004298 ORTHO05D006236 5.6e-136 488.4 433 62.4
Duzib168G1617 Durio zibethinus HOM05D004298 ORTHO05D006236 1.2e-135 487.3 433 61.4
Peaxi162Scf00270g00819 Petunia axillaris HOM05D004298 ORTHO05D006236 1.2e-135 487.3 433 62.4
PGR102G1912 Punica granatum HOM05D004298 ORTHO05D006236 1.6e-135 486.9 433 61.9
Nitab4.5_0000650g0220 Nicotiana tabacum HOM05D004298 ORTHO05D006236 2.8e-135 486.1 433 62.6
arahy.Tifrunner.gnm1.ann1.ETHX4E Arachis hypogaea HOM05D004298 ORTHO05D006236 3.6e-135 485.7 433 61.7
Gohir.A08G197500 Gossypium hirsutum HOM05D004298 ORTHO05D006236 3.6e-135 485.7 439 61.3
Manes.04G021700 Manihot esculenta HOM05D004298 ORTHO05D006236 3.6e-135 485.7 433 61.7
unitig_27.g25060 Utricularia gibba HOM05D004298 ORTHO05D006236 4.7e-135 485.3 433 61.4
Solyc11g069380.2 Solanum lycopersicum HOM05D004298 ORTHO05D006236 8.1e-135 484.6 433 62.4
arahy.Tifrunner.gnm1.ann1.VBZF8N Arachis hypogaea HOM05D004298 ORTHO05D006236 1.1e-134 484.2 433 61.4
GSVIVG01025182001 Vitis vinifera HOM05D004298 ORTHO05D006236 1.1e-134 484.2 433 61.2
MD11G1135000 Malus domestica HOM05D004298 ORTHO05D006236 1.8e-134 483.4 433 61.9
CSS0023686 Camellia sinensis var. sinensis HOM05D004298 ORTHO05D006236 3.1e-134 482.6 433 61.2
MSTRG.12319 Avicennia marina HOM05D004298 ORTHO05D006236 4.0e-134 482.3 433 61.7
QL01p022296 Quercus lobata HOM05D004298 ORTHO05D006236 4.0e-134 482.3 432 61.6
Sopen11g028100 Solanum pennellii HOM05D004298 ORTHO05D006236 4.0e-134 482.3 433 61.9
Actinidia20454 Actinidia chinensis HOM05D004298 ORTHO05D006236 6.8e-134 481.5 433 61.4
CAN.G631.24 Capsicum annuum HOM05D004298 ORTHO05D006236 6.8e-134 481.5 433 61.2
Lsat_1_v5_gn_2_98360 Lactuca sativa HOM05D004298 ORTHO05D006236 6.8e-134 481.5 433 61.0
Hma1.2p1_1031F.1_g250050 Hydrangea macrophylla HOM05D004298 ORTHO05D006236 1.5e-133 480.3 431 61.5
CSS0023657 Camellia sinensis var. sinensis HOM05D004298 ORTHO05D006236 2.6e-133 479.6 432 60.6
CSS0037274 Camellia sinensis var. sinensis HOM05D004298 ORTHO05D006236 2.6e-133 479.6 432 60.6
DCAR_015537 Daucus carota HOM05D004298 ORTHO05D006236 3.4e-133 479.2 433 61.0
Nn2g10781 Nelumbo nucifera HOM05D004298 ORTHO05D006236 3.4e-133 479.2 433 59.6
Haze_23837 Corylus avellana HOM05D004298 ORTHO05D006236 4.4e-133 478.8 433 61.2
Haze_23839 Corylus avellana HOM05D004298 ORTHO05D006236 4.4e-133 478.8 433 61.2
HanXRQChr07g0197541 Helianthus annuus HOM05D004298 ORTHO05D006236 4.4e-133 478.8 433 61.0
HanXRQChr14g0452871 Helianthus annuus HOM05D004298 ORTHO05D006236 4.4e-133 478.8 433 61.0
Ah.01g014360 Amaranthus hybridus HOM05D004298 ORTHO05D006236 5.8e-133 478.4 433 61.2
PGSC0003DMG400008050 Solanum tuberosum HOM05D004298 ORTHO05D006236 5.8e-133 478.4 433 61.4
Glyma.13G326400 Glycine max HOM05D004298 ORTHO05D006236 7.5e-133 478.0 433 60.7
VMungo1080G1181 Vigna mungo HOM05D004298 ORTHO05D006236 7.5e-133 478.0 433 61.7
Ciclev10027881m.g Citrus clementina HOM05D004298 ORTHO05D006236 9.9e-133 477.6 433 61.4
FAN21G2260 Fragaria x ananassa HOM05D004298 ORTHO05D006236 1.3e-132 477.2 433 60.0
Sabra09G0008100 Salix brachista HOM05D004298 ORTHO05D006236 1.3e-132 477.2 433 60.0
Lj2C1029T7 Lonicera japonica HOM05D004298 ORTHO05D006236 1.7e-132 476.9 432 62.3
Lalb_Chr14g0374701 Lupinus albus HOM05D004298 ORTHO05D006236 1.7e-132 476.9 433 61.0
Rhsim01G0217200 Rhododendron simsii HOM05D004298 ORTHO05D006236 1.7e-132 476.9 430 61.9
TWI31G1183 Tripterygium wilfordii HOM05D004298 ORTHO05D006236 1.7e-132 476.9 433 59.8
ATR0115G030 Amborella trichopoda HOM05D004298 ORTHO05D006236 2.2e-132 476.5 433 60.0
EL10Ac9g22507 Beta vulgaris HOM05D004298 ORTHO05D006236 2.2e-132 476.5 433 61.0
Lj2C1029G11 Lonicera japonica HOM05D004298 ORTHO05D006236 2.2e-132 476.5 432 62.0
Medtr2g094160 Medicago truncatula HOM05D004298 ORTHO05D006236 2.2e-132 476.5 433 61.9
Phvul.005G135800 Phaseolus vulgaris HOM05D004298 ORTHO05D006236 2.2e-132 476.5 433 61.2
TPR.G11486 Trifolium pratense HOM05D004298 ORTHO05D006236 2.2e-132 476.5 433 61.2
Ca_01417_v3 Cicer arietinum L. HOM05D004298 ORTHO05D006236 2.9e-132 476.1 433 61.2
Potri.009G013400 Populus trichocarpa HOM05D004298 ORTHO05D006236 2.9e-132 476.1 432 60.2
FAN16G0818 Fragaria x ananassa HOM05D004298 ORTHO05D006236 3.7e-132 475.7 433 59.6
Prupe.6G101000 Prunus persica HOM05D004298 ORTHO05D006236 3.7e-132 475.7 433 59.8
RcHm_v2.0_Chr5g0059471 Rosa chinensis HOM05D004298 ORTHO05D006236 3.7e-132 475.7 433 59.8
Lalb_Chr24g0394611 Lupinus albus HOM05D004298 ORTHO05D006236 6.4e-132 474.9 433 61.4
Sc06g0010150 Simmondsia chinensis HOM05D004298 ORTHO05D006236 1.1e-131 474.2 431 60.3
FAN25G3839 Fragaria x ananassa HOM05D004298 ORTHO05D006236 1.4e-131 473.8 433 59.6
Sed0018088 Sechium edule HOM05D004298 ORTHO05D006236 1.4e-131 473.8 433 60.3
CANSAT54G2863 Cannabis sativa HOM05D004298 ORTHO05D006236 3.2e-131 472.6 433 60.7
Psat5g278240 Pisum sativum HOM05D004298 ORTHO05D006236 3.2e-131 472.6 433 60.5
ECA238G4788 Erigeron canadensis HOM05D004298 ORTHO05D006236 4.1e-131 472.2 433 60.3
MD03G1117300 Malus domestica HOM05D004298 ORTHO05D006236 5.4e-131 471.9 433 60.5
TWI79G1123 Tripterygium wilfordii HOM05D004298 ORTHO05D006236 9.2e-131 471.1 433 59.6
Lalb_Chr03g0027311 Lupinus albus HOM05D004298 ORTHO05D006236 1.2e-130 470.7 433 60.5
TAR636G1671 Trochodendron aralioides HOM05D004298 ORTHO05D006236 1.2e-130 470.7 433 60.0
THA.LOC104810855 Tarenaya hassleriana HOM05D004298 ORTHO05D006236 1.6e-130 470.3 432 60.0
AL8G37190 Arabidopsis lyrata HOM05D004298 ORTHO05D006236 2.1e-130 469.9 432 59.5
BcaB08g36355 Brassica carinata HOM05D004298 ORTHO05D006236 2.1e-130 469.9 432 59.3
Carub.0008s2128 Capsella rubella HOM05D004298 ORTHO05D006236 2.1e-130 469.9 432 59.3
Atru.BG.119.p Acer truncatum HOM05D004298 ORTHO05D006236 2.7e-130 469.5 426 60.3
Aa31LG1G12580 Aethionema arabicum HOM05D004298 ORTHO05D006236 2.7e-130 469.5 432 59.0
AUR62024990 Chenopodium quinoa HOM05D004298 ORTHO05D006236 2.7e-130 469.5 433 60.3
Potri.004G210400 Populus trichocarpa HOM05D004298 ORTHO05D006236 2.7e-130 469.5 431 60.3
Sabra04G0142000 Salix brachista HOM05D004298 ORTHO05D006236 2.7e-130 469.5 437 60.0
BraA10t43856Z Brassica rapa HOM05D004298 ORTHO05D006236 3.5e-130 469.2 432 59.3
MELO3C005061.2 Cucumis melo HOM05D004298 ORTHO05D006236 3.5e-130 469.2 433 59.8
Eucgr.B02495 Eucalyptus grandis HOM05D004298 ORTHO05D006236 3.5e-130 469.2 433 60.7
CsaV3_1G012820 Cucumis sativus L. HOM05D004298 ORTHO05D006236 4.6e-130 468.8 433 59.4
Os02g0603800 Oryza sativa ssp. japonica HOM05D004298 ORTHO05D006236 4.6e-130 468.8 434 60.4
FvH4_3g32460 Fragaria vesca HOM05D004298 ORTHO05D006236 6.0e-130 468.4 433 59.1
TAR636G3405 Trochodendron aralioides HOM05D004298 ORTHO05D006236 6.0e-130 468.4 433 59.8
C09p53300 Brassica napus HOM05D004298 ORTHO05D006236 1.3e-129 467.2 432 59.0
A10p17790 Brassica napus HOM05D004298 ORTHO05D006236 3.9e-129 465.7 432 58.8
CARHR274260 Cardamine hirsuta HOM05D004298 ORTHO05D006236 3.9e-129 465.7 432 59.0
FAN11G2723 Fragaria x ananassa HOM05D004298 ORTHO05D006236 5.1e-129 465.3 433 58.9
AT5G60600 Arabidopsis thaliana HOM05D004298 ORTHO05D006236 6.6e-129 464.9 432 58.8
PSO339G0771 Papaver somniferum HOM05D004298 ORTHO05D006236 6.6e-129 464.9 433 58.9
PSO384G0735 Papaver somniferum HOM05D004298 ORTHO05D006236 6.6e-129 464.9 433 58.9
Sp6g22170 Schrenkiella parvula HOM05D004298 ORTHO05D006236 6.6e-129 464.9 432 59.0
Thhalv10012774m.g Eutrema salsugineum HOM05D004298 ORTHO05D006236 1.1e-128 464.2 432 58.3
BcaC04g19719 Brassica carinata HOM05D004298 ORTHO05D006236 1.5e-128 463.8 429 59.0
CDE02G3870 Ceratophyllum demersum HOM05D004298 ORTHO05D006236 2.5e-128 463.0 433 59.4
Lj3g0003128 Lotus japonicus HOM05D004298 ORTHO05D006236 2.5e-128 463.0 460 57.2
Hund08138 Selenicereus undatus HOM05D004298 ORTHO05D006236 7.3e-128 461.5 433 58.7
arahy.Tifrunner.gnm1.ann1.068WZH Arachis hypogaea HOM05D004298 ORTHO05D006236 1.6e-127 460.3 433 58.4
arahy.Tifrunner.gnm1.ann1.X2DMBM Arachis hypogaea HOM05D004298 ORTHO05D006236 1.6e-127 460.3 433 58.7
vmacro14439 Vaccinium macrocarpon HOM05D004298 ORTHO05D006236 1.6e-127 460.3 494 54.7
Aqoxy1G01246 Aquilegia oxysepala HOM05D004298 ORTHO05D006236 2.8e-127 459.5 433 59.4
Zm00001eb246530 Zea mays HOM05D004298 ORTHO05D006236 2.4e-126 456.4 434 59.4
HPP92_014714 Vanilla planifolia HOM05D004298 ORTHO05D006236 1.3e-124 450.7 430 59.3
AUR62039630 Chenopodium quinoa HOM05D004298 ORTHO05D006236 6.4e-124 448.4 393 62.1
BolC9t58204H Brassica oleracea HOM05D004298 ORTHO05D006236 1.1e-123 447.6 465 54.6
ClCG03G002170 Citrullus lanatus HOM05D004298 ORTHO05D006236 1.9e-123 446.8 496 52.6
SEGI_29082 Sequoiadendron giganteum HOM05D004298 ORTHO05D006236 7.1e-123 444.9 433 57.5
CDE08G0282 Ceratophyllum demersum HOM05D004298 ORTHO05D006236 2.1e-122 443.4 413 58.6
TAR633G1103 Trochodendron aralioides HOM05D004298 ORTHO05D006236 2.8e-119 433.0 395 60.5
Dinv32749 Davidia involucrata HOM05D004298 ORTHO05D006236 1.8e-118 430.3 395 59.7
DCAR_006060 Daucus carota HOM05D004298 ORTHO05D006236 2.9e-116 422.9 395 58.5
SMO146G0141 Selaginella moellendorffii HOM05D004298 ORTHO05D006236 6.4e-116 421.8 432 56.0
MBI07_g19314_MAGBIO Magnolia biondii HOM05D004298 ORTHO05D006236 4.2e-115 419.1 395 59.0
Actinidia03730 Actinidia chinensis HOM05D004298 ORTHO05D006236 1.6e-114 417.2 436 55.5
Mapoly0048s0084 Marchantia polymorpha HOM05D004298 ORTHO05D006236 4.6e-114 415.6 431 55.0
Pp3c22_14940 Physcomitrium patens HOM05D004298 ORTHO05D006236 6.0e-114 415.2 432 53.7
Pp3c19_16320 Physcomitrium patens HOM05D004298 ORTHO05D006236 9.6e-112 407.9 432 52.8
Pp3c21_19070 Physcomitrium patens HOM05D004298 ORTHO05D006236 6.9e-110 401.7 432 52.1
Hma1.2p1_0391F.1_g142750 Hydrangea macrophylla HOM05D004298 ORTHO05D006236 2.9e-108 396.4 486 49.0
Nitab4.5_0006333g0040 Nicotiana tabacum HOM05D004298 ORTHO05D006236 7.1e-107 391.7 424 55.0
Glyma.12G173200 Glycine max HOM05D004298 ORTHO05D006236 5.6e-104 382.1 365 58.4
AagrBONN_evm.TU.Sc2ySwM_117.2437 Anthoceros agrestis HOM05D004298 ORTHO05D006236 1.3e-89 334.3 366 52.5
Cre12.g490350 Chlamydomonas reinhardtii HOM05D004298 ORTHO05D006236 1.6e-82 310.8 432 43.8
MCO10G060 Micromonas commoda HOM05D004298 ORTHO05D006236 3.8e-76 289.7 430 42.1
PRCOL_00002263 Prasinoderma coloniale HOM05D004298 ORTHO05D006236 2.8e-71 273.5 430 40.7
C09p53310 Brassica napus HOM05D004298 ORTHO05D006236 2.6e-61 240.4 143 81.8
COL.COLO4_18338 Corchorus olitorius HOM05D004298 ORTHO05D006236 7.7e-53 212.2 252 50.8
CBR_g51121 Chara braunii HOM05D004298 ORTHO05D006236 9.4e-51 205.3 272 44.5
Atru.chr3.3635 Acer truncatum HOM05D004298 ORTHO05D006236 3.5e-37 160.2 124 68.5
HanXRQChr13g0402271 Helianthus annuus HOM05D004298 ORTHO05D006236 6.8e-33 146.0 124 61.3
Nitab4.5_0012814g0010 Nicotiana tabacum HOM05D004298 ORTHO05D006236 2.3e-25 120.9 147 51.0
Nitab4.5_0011114g0030 Nicotiana tabacum HOM05D004298 ORTHO05D006236 1.2e-24 118.6 145 50.3
TAR636G3504 Trochodendron aralioides HOM05D004298 ORTHO05D023169 1.2e-21 108.6 101 52.5
arahy.Tifrunner.gnm1.ann1.BZC8YM Arachis hypogaea HOM05D004298 ORTHO05D000893 2.3e-17 94.4 95 55.8
HanXRQChr12g0375701 Helianthus annuus HOM05D004298 ORTHO05D006236 1.3e-15 88.6 53 75.5
SEGI_39119 Sequoiadendron giganteum HOM05D004298 ORTHO05D006236 4.1e-14 83.6 65 63.1
TAR636G1311 Trochodendron aralioides HOM05D004298 ORTHO05D023169 3.0e-12 77.4 75 48.0
SGA_v2.0_scaffold290G47319 Striga asiatica HOM05D004298 ORTHO05D023169 4.3e-11 73.6 83 47.0
SGA_v2.0_scaffold12G06316 Striga asiatica HOM05D004298 ORTHO05D023169 9.6e-11 72.4 83 48.2
SGA_v2.0_scaffold28G11882 Striga asiatica HOM05D000239 ORTHO05D000484 2.1e-10 71.2 89 46.1
Nitab4.5_0005621g0180 Nicotiana tabacum HOM05D004609 ORTHO05D005537 2.9e-07 60.8 55 60.0


User provided reference genes

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