Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold73G24511 Striga asiatica HOM05D005691 ORTHO05D007096 0.0e+00 2478.4 1253 100.0
SGA_v2.0_scaffold292G47401 Striga asiatica HOM05D005691 ORTHO05D007096 0.0e+00 2004.2 1225 85.3
SGA_v2.0_scaffold292G47412 Striga asiatica HOM05D005691 ORTHO05D007096 0.0e+00 1952.6 1218 82.8
Migut.M00032 Erythranthe guttata HOM05D005691 ORTHO05D007096 0.0e+00 1793.9 1240 72.4
MSTRG.6644 Avicennia marina HOM05D005691 ORTHO05D007096 0.0e+00 1749.6 1249 70.1
Oeu029977.1 Olea europaea HOM05D005691 ORTHO05D007096 0.0e+00 1606.7 1229 66.9
SalBow7G1588 Salvia bowleyana HOM05D005691 ORTHO05D007096 0.0e+00 1582.4 1234 67.3
CSS0009966 Camellia sinensis var. sinensis HOM05D005691 ORTHO05D007096 0.0e+00 1558.5 1245 63.6
CSS0040753 Camellia sinensis var. sinensis HOM05D005691 ORTHO05D007096 0.0e+00 1557.7 1257 63.0
Cc00_g04460 Coffea canephora HOM05D005691 ORTHO05D007096 0.0e+00 1521.5 1257 61.8
Peaxi162Scf00776g00233 Petunia axillaris HOM05D005691 ORTHO05D007096 0.0e+00 1515.4 1273 61.4
Nitab4.5_0009877g0010 Nicotiana tabacum HOM05D005691 ORTHO05D007096 0.0e+00 1514.6 1254 62.0
PGSC0003DMG400006150 Solanum tuberosum HOM05D005691 ORTHO05D007096 0.0e+00 1503.4 1254 61.5
Lj8A134T75 Lonicera japonica HOM05D005691 ORTHO05D007096 0.0e+00 1498.8 1253 61.1
Nitab4.5_0000441g0080 Nicotiana tabacum HOM05D005691 ORTHO05D007096 0.0e+00 1498.4 1254 61.5
Actinidia21444 Actinidia chinensis HOM05D005691 ORTHO05D007096 0.0e+00 1490.3 1259 61.2
Sopen07g024300 Solanum pennellii HOM05D005691 ORTHO05D007096 0.0e+00 1485.3 1254 61.1
Hma1.2p1_0133F.1_g061380 Hydrangea macrophylla HOM05D005691 ORTHO05D007096 0.0e+00 1483.4 1253 60.4
CAN.G854.9 Capsicum annuum HOM05D005691 ORTHO05D007096 0.0e+00 1481.8 1254 60.4
Haze_12684 Corylus avellana HOM05D005691 ORTHO05D007096 0.0e+00 1472.2 1256 60.6
QL08p028494 Quercus lobata HOM05D005691 ORTHO05D007096 0.0e+00 1457.2 1248 60.5
vmacro09398 Vaccinium macrocarpon HOM05D005691 ORTHO05D007096 0.0e+00 1451.0 1323 57.7
Thecc.01G191500 Theobroma cacao HOM05D005691 ORTHO05D007096 0.0e+00 1446.8 1256 59.2
Gohir.A07G191000 Gossypium hirsutum HOM05D005691 ORTHO05D007096 0.0e+00 1441.0 1249 58.9
Manes.12G061100 Manihot esculenta HOM05D005691 ORTHO05D007096 0.0e+00 1440.6 1256 59.0
Prupe.3G200800 Prunus persica HOM05D005691 ORTHO05D007096 0.0e+00 1423.7 1254 59.3
Atru.chr6.3368 Acer truncatum HOM05D005691 ORTHO05D007096 0.0e+00 1416.7 1254 59.0
GSVIVG01030051001 Vitis vinifera HOM05D005691 ORTHO05D007096 0.0e+00 1414.8 1237 59.3
ECA240G2675 Erigeron canadensis HOM05D005691 ORTHO05D007096 0.0e+00 1413.7 1232 60.0
Rhsim04G0038700 Rhododendron simsii HOM05D005691 ORTHO05D007096 0.0e+00 1411.0 1396 54.9
CiPaw.03G279200 Carya illinoinensis HOM05D005691 ORTHO05D007096 0.0e+00 1410.6 1255 58.2
Ciclev10014054m.g Citrus clementina HOM05D005691 ORTHO05D007096 0.0e+00 1402.5 1254 57.9
DCAR_019708 Daucus carota HOM05D005691 ORTHO05D007096 0.0e+00 1400.2 1240 58.1
CANSAT64G0049 Cannabis sativa HOM05D005691 ORTHO05D007096 0.0e+00 1395.9 1248 57.9
Potri.002G221300 Populus trichocarpa HOM05D005691 ORTHO05D007096 0.0e+00 1394.0 1244 57.1
Gohir.D07G197400 Gossypium hirsutum HOM05D005691 ORTHO05D007096 0.0e+00 1393.6 1200 59.1
Gorai.001G221100 Gossypium raimondii HOM05D005691 ORTHO05D007096 0.0e+00 1392.1 1200 59.3
RcHm_v2.0_Chr2g0156551 Rosa chinensis HOM05D005691 ORTHO05D007096 0.0e+00 1388.2 1253 57.5
TWI18G1215 Tripterygium wilfordii HOM05D005691 ORTHO05D007096 0.0e+00 1388.2 1241 57.4
HanXRQChr03g0075241 Helianthus annuus HOM05D005691 ORTHO05D007096 0.0e+00 1380.5 1231 58.8
MD17G1113600 Malus domestica HOM05D005691 ORTHO05D007096 0.0e+00 1380.2 1253 57.8
AUR62015058 Chenopodium quinoa HOM05D005691 ORTHO05D007096 0.0e+00 1377.5 1257 56.3
FvH4_6g40930 Fragaria vesca HOM05D005691 ORTHO05D007096 0.0e+00 1377.1 1264 56.3
Nn1g07449 Nelumbo nucifera HOM05D005691 ORTHO05D007096 0.0e+00 1376.3 1260 57.0
Eucgr.A01048 Eucalyptus grandis HOM05D005691 ORTHO05D007096 0.0e+00 1373.6 1255 56.8
FAN14G0170 Fragaria x ananassa HOM05D005691 ORTHO05D007096 0.0e+00 1373.2 1264 56.2
FAN05G1189 Fragaria x ananassa HOM05D005691 ORTHO05D007096 0.0e+00 1368.2 1264 56.0
FAN09G3499 Fragaria x ananassa HOM05D005691 ORTHO05D007096 0.0e+00 1364.7 1264 55.9
LjContig00081g0016683 Lotus japonicus HOM05D005691 ORTHO05D007096 0.0e+00 1361.3 1249 55.7
Sc21g0000790 Simmondsia chinensis HOM05D005691 ORTHO05D007096 0.0e+00 1361.3 1251 56.0
arahy.Tifrunner.gnm1.ann1.2CK2M8 Arachis hypogaea HOM05D005691 ORTHO05D007096 0.0e+00 1360.5 1252 55.8
PGR042G3586 Punica granatum HOM05D005691 ORTHO05D007096 0.0e+00 1358.2 1254 57.3
PSO675G5893 Papaver somniferum HOM05D005691 ORTHO05D007096 0.0e+00 1357.4 1256 56.1
AUR62017514 Chenopodium quinoa HOM05D005691 ORTHO05D007096 0.0e+00 1354.7 1257 55.6
EL10Ac9g22718 Beta vulgaris HOM05D005691 ORTHO05D007096 0.0e+00 1353.6 1257 54.8
Sabra02G0169100 Salix brachista HOM05D005691 ORTHO05D007096 0.0e+00 1351.3 1287 55.2
MBI16_g26390_MAGBIO Magnolia biondii HOM05D005691 ORTHO05D007096 0.0e+00 1350.5 1258 55.9
Hund01594 Selenicereus undatus HOM05D005691 ORTHO05D007096 0.0e+00 1345.5 1255 55.3
arahy.Tifrunner.gnm1.ann1.5BD1HA Arachis hypogaea HOM05D005691 ORTHO05D007096 0.0e+00 1344.7 1252 55.5
Ca_06452_v3 Cicer arietinum L. HOM05D005691 ORTHO05D007096 0.0e+00 1343.6 1248 55.2
Glyma.02G305200 Glycine max HOM05D005691 ORTHO05D007096 0.0e+00 1339.7 1256 55.4
FAN02G1659 Fragaria x ananassa HOM05D005691 ORTHO05D007096 0.0e+00 1338.6 1279 54.7
Glyma.14G008200 Glycine max HOM05D005691 ORTHO05D007096 0.0e+00 1337.0 1256 55.4
Psat2g005000 Pisum sativum HOM05D005691 ORTHO05D007096 0.0e+00 1335.9 1254 55.0
Phvul.008G284900 Phaseolus vulgaris HOM05D005691 ORTHO05D007096 0.0e+00 1333.5 1253 54.9
Medtr5g097260 Medicago truncatula HOM05D005691 ORTHO05D007096 0.0e+00 1332.4 1251 55.2
VMungo0647G0393 Vigna mungo HOM05D005691 ORTHO05D007096 0.0e+00 1332.0 1249 55.1
Lalb_Chr10g0107611 Lupinus albus HOM05D005691 ORTHO05D007096 0.0e+00 1325.5 1254 55.4
TPR.G1235 Trifolium pratense HOM05D005691 ORTHO05D007096 0.0e+00 1320.1 1257 55.1
Dinv07866 Davidia involucrata HOM05D005691 ORTHO05D007096 0.0e+00 1317.8 1263 55.9
Aqoxy4G02218 Aquilegia oxysepala HOM05D005691 ORTHO05D007096 0.0e+00 1316.2 1255 55.1
Sed0003649 Sechium edule HOM05D005691 ORTHO05D007096 0.0e+00 1307.7 1250 55.0
CsaV3_7G002600 Cucumis sativus L. HOM05D005691 ORTHO05D007096 0.0e+00 1300.8 1252 55.4
ClCG02G002780 Citrullus lanatus HOM05D005691 ORTHO05D007096 0.0e+00 1298.5 1252 55.1
MELO3C024202.2 Cucumis melo HOM05D005691 ORTHO05D007096 0.0e+00 1298.5 1247 55.0
Lsat_1_v5_gn_9_104801 Lactuca sativa HOM05D005691 ORTHO05D007096 0.0e+00 1295.4 1231 56.2
THA.LOC104815358 Tarenaya hassleriana HOM05D005691 ORTHO05D007096 0.0e+00 1283.5 1254 52.7
Thhalv10003521m.g Eutrema salsugineum HOM05D005691 ORTHO05D007096 0.0e+00 1245.0 1251 52.8
ATR1149G135 Amborella trichopoda HOM05D005691 ORTHO05D007096 0.0e+00 1238.0 1259 51.5
AL3G42730 Arabidopsis lyrata HOM05D005691 ORTHO05D007096 0.0e+00 1235.7 1250 52.4
Carub.0003s2665 Capsella rubella HOM05D005691 ORTHO05D007096 0.0e+00 1228.4 1251 52.4
BraA03t13590Z Brassica rapa HOM05D005691 ORTHO05D007096 0.0e+00 1216.4 1234 53.2
C03p55370 Brassica napus HOM05D005691 ORTHO05D007096 0.0e+00 1216.1 1234 52.9
BcaB08g34496 Brassica carinata HOM05D005691 ORTHO05D007096 0.0e+00 1215.7 1245 52.5
BcaB06g26838 Brassica carinata HOM05D005691 ORTHO05D007096 0.0e+00 1215.3 1243 51.8
Sp3g23610 Schrenkiella parvula HOM05D005691 ORTHO05D007096 0.0e+00 1213.4 1245 51.5
A03p44570 Brassica napus HOM05D005691 ORTHO05D007096 0.0e+00 1213.0 1234 53.0
BcaC01g03178 Brassica carinata HOM05D005691 ORTHO05D007096 0.0e+00 1207.6 1234 52.5
BolC3t17809H Brassica oleracea HOM05D005691 ORTHO05D007096 0.0e+00 1207.6 1234 52.5
Zm00001eb399630 Zea mays HOM05D005691 ORTHO05D007096 0.0e+00 1156.0 1246 50.5
Os03g0225500 Oryza sativa ssp. japonica HOM05D005691 ORTHO05D007096 0.0e+00 1151.0 1242 49.9
CARHR103010 Cardamine hirsuta HOM05D005691 ORTHO05D007096 0.0e+00 1150.2 1076 56.0
TAR626G1898 Trochodendron aralioides HOM05D005691 ORTHO05D007096 0.0e+00 1111.7 989 59.3
Hma1.2p1_0133F.1_g061370 Hydrangea macrophylla HOM05D005691 ORTHO05D007096 8.6e-312 1073.9 907 60.7
Solyc07g047860.4 Solanum lycopersicum HOM05D005691 ORTHO05D007096 8.5e-310 1067.4 844 64.0
SEGI_38606 Sequoiadendron giganteum HOM05D005691 ORTHO05D007096 1.4e-309 1066.6 1270 45.2
AT2G05120 Arabidopsis thaliana HOM05D005691 ORTHO05D007096 5.5e-309 1064.7 967 57.4
SHI10144 Sapria himalayana HOM05D005691 ORTHO05D007096 3.6e-284 982.2 1205 44.8
unitig_746.g26642 Utricularia gibba HOM05D005691 ORTHO05D007096 1.6e-268 930.2 1229 44.8
BcaC06g35896 Brassica carinata HOM05D005691 ORTHO05D007096 5.8e-258 895.2 1222 43.6
Mapoly0061s0124 Marchantia polymorpha HOM05D005691 ORTHO05D007096 4.7e-252 875.5 1252 40.9
SMO351G0158 Selaginella moellendorffii HOM05D005691 ORTHO05D007096 2.1e-244 850.1 1277 39.9
AagrBONN_evm.TU.Sc2ySwM_362.2878 Anthoceros agrestis HOM05D005691 ORTHO05D007096 3.9e-222 776.2 1135 42.0
Pp3c21_14430 Physcomitrium patens HOM05D005691 ORTHO05D007096 1.3e-214 751.1 1242 37.2
CDE04G3337 Ceratophyllum demersum HOM05D005691 ORTHO05D007096 2.1e-199 700.7 890 44.3
HPP92_000880 Vanilla planifolia HOM05D005691 ORTHO05D007096 6.6e-153 546.2 598 48.8
COL.COLO4_09229 Corchorus olitorius HOM05D005691 ORTHO05D007096 5.0e-145 520.0 473 55.4
COL.COLO4_09230 Corchorus olitorius HOM05D005691 ORTHO05D007096 6.6e-129 466.5 498 52.4
CBR_g39814 Chara braunii HOM05D005691 ORTHO05D007096 1.5e-117 428.7 1116 29.9
SMO351G0109 Selaginella moellendorffii HOM05D005691 ORTHO05D007096 3.1e-94 351.3 1060 29.2
CDE04G1592 Ceratophyllum demersum HOM05D005691 ORTHO05D007096 2.1e-90 338.6 323 52.3
Cpa.g.sc211.12 Carica papaya HOM05D005691 ORTHO05D007096 1.3e-89 335.9 290 57.9
HPP92_000881 Vanilla planifolia HOM05D005691 ORTHO05D007096 6.9e-86 323.6 367 47.1
Cpa.g.sc211.9 Carica papaya HOM05D005691 ORTHO05D007096 5.5e-83 313.9 307 52.4
C07p09910 Brassica napus HOM05D005691 ORTHO05D007096 2.5e-75 288.5 261 60.2
C07p09950 Brassica napus HOM05D005691 ORTHO05D007096 4.0e-57 228.0 308 41.6
Hma1.2p1_1825F.1_g304370 Hydrangea macrophylla HOM05D005691 ORTHO05D007096 5.2e-57 227.6 214 53.3
Hma1.2p1_0133F.1_g061390 Hydrangea macrophylla HOM05D005691 ORTHO05D007096 3.6e-50 204.9 169 57.4
BolC7t41441H Brassica oleracea HOM05D005691 ORTHO05D007096 2.8e-47 195.3 299 39.1
Hma1.2p1_1825F.1_g304360 Hydrangea macrophylla HOM05D005691 ORTHO05D007096 2.0e-45 189.1 156 60.9
MCO12G144 Micromonas commoda HOM05D005691 ORTHO05D007096 1.3e-31 143.3 677 26.1
C07p09940 Brassica napus HOM05D005691 ORTHO05D007096 2.2e-31 142.5 119 60.5
TAR626G0169 Trochodendron aralioides HOM05D005691 ORTHO05D007096 2.9e-31 142.1 146 46.6
PGR042G0477 Punica granatum HOM05D005691 ORTHO05D007096 3.9e-28 131.7 130 56.9
SalBow7G3724 Salvia bowleyana HOM05D005691 ORTHO05D007096 1.0e-20 107.1 99 53.5
PGR042G0061 Punica granatum HOM05D005691 ORTHO05D007096 3.3e-19 102.1 98 52.0
CSS0045948 Camellia sinensis var. sinensis HOM05D005691 ORTHO05D007096 2.8e-10 72.4 134 38.1
BolC7t41437H Brassica oleracea HOM05D005691 ORTHO05D027513 5.8e-08 64.7 123 32.5


User provided reference genes

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