Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold70G23531 Striga asiatica HOM05D002263 ORTHO05D029194 0.0e+00 1259.2 635 100.0
SGA_v2.0_scaffold3G01642 Striga asiatica HOM05D002263 ORTHO05D029194 9.6e-60 235.7 126 96.8
SGA_v2.0_scaffold105G30414 Striga asiatica HOM05D002263 ORTHO05D003537 5.5e-55 219.9 111 95.5
Hma1.2p1_0326F.1_g126210 Hydrangea macrophylla HOM05D002263 ORTHO05D003537 1.1e-44 185.7 115 75.7
PSO832G4242 Papaver somniferum HOM05D002263 ORTHO05D003537 1.9e-44 184.9 111 77.5
PGR031G1196 Punica granatum HOM05D002263 ORTHO05D003537 2.8e-43 181.0 115 76.5
TAR623G1165 Trochodendron aralioides HOM05D002263 ORTHO05D003537 6.3e-43 179.9 115 76.5
Nn2g15271 Nelumbo nucifera HOM05D002263 ORTHO05D003537 1.1e-42 179.1 130 68.5
Lj2C383G13 Lonicera japonica HOM05D002263 ORTHO05D003537 1.4e-42 178.7 115 75.7
PSO063G6561 Papaver somniferum HOM05D002263 ORTHO05D003537 1.4e-42 178.7 111 75.7
CDE10G0015 Ceratophyllum demersum HOM05D002263 ORTHO05D003537 2.4e-42 177.9 115 77.4
Eucgr.H02633 Eucalyptus grandis HOM05D002263 ORTHO05D003537 3.1e-42 177.6 115 75.7
Potri.001G264000 Populus trichocarpa HOM05D002263 ORTHO05D003537 4.1e-42 177.2 115 73.9
TAR369G0754 Trochodendron aralioides HOM05D002263 ORTHO05D003537 4.1e-42 177.2 115 74.8
GSVIVG01032138001 Vitis vinifera HOM05D002263 ORTHO05D003537 4.1e-42 177.2 115 75.7
RhsimUnG0044300 Rhododendron simsii HOM05D002263 ORTHO05D003537 5.3e-42 176.8 111 74.8
ATR0332G038 Amborella trichopoda HOM05D002263 ORTHO05D003537 6.9e-42 176.4 111 74.8
Eucgr.H02748 Eucalyptus grandis HOM05D002263 ORTHO05D003537 6.9e-42 176.4 115 74.8
Hma1.2p1_2160F.1_g315580 Hydrangea macrophylla HOM05D002263 ORTHO05D003537 6.9e-42 176.4 115 74.8
CSS0021570 Camellia sinensis var. sinensis HOM05D002263 ORTHO05D003537 1.2e-41 175.6 115 73.9
CSS0033402 Camellia sinensis var. sinensis HOM05D002263 ORTHO05D003537 1.2e-41 175.6 115 73.9
unitig_8.g3777 Utricularia gibba HOM05D002263 ORTHO05D003537 1.2e-41 175.6 115 73.0
Sabra09G0043200 Salix brachista HOM05D002263 ORTHO05D003537 1.5e-41 175.3 115 73.0
Atru.chr11.2587 Acer truncatum HOM05D002263 ORTHO05D003537 2.0e-41 174.9 115 73.9
Cc02_g28170 Coffea canephora HOM05D002263 ORTHO05D003537 2.0e-41 174.9 115 73.0
Dinv43424 Davidia involucrata HOM05D002263 ORTHO05D003537 2.0e-41 174.9 115 73.9
Actinidia19405 Actinidia chinensis HOM05D002263 ORTHO05D003537 2.6e-41 174.5 115 73.9
unitig_22.g5326 Utricularia gibba HOM05D002263 ORTHO05D003537 2.6e-41 174.5 115 72.2
Lj9C634T13 Lonicera japonica HOM05D002263 ORTHO05D003537 3.4e-41 174.1 115 70.4
MD02G1308000 Malus domestica HOM05D002263 ORTHO05D003537 3.4e-41 174.1 115 72.2
FvH4_7g01280 Fragaria vesca HOM05D002263 ORTHO05D003537 4.5e-41 173.7 115 73.9
FAN01G0038 Fragaria x ananassa HOM05D002263 ORTHO05D003537 4.5e-41 173.7 115 73.9
FAN03G0380 Fragaria x ananassa HOM05D002263 ORTHO05D003537 4.5e-41 173.7 115 73.9
FAN06G0127 Fragaria x ananassa HOM05D002263 ORTHO05D003537 4.5e-41 173.7 115 73.9
FAN10G1377 Fragaria x ananassa HOM05D002263 ORTHO05D003537 4.5e-41 173.7 115 73.9
Rhsim01G0127100 Rhododendron simsii HOM05D002263 ORTHO05D003537 4.5e-41 173.7 115 73.9
Rhsim01G0128300 Rhododendron simsii HOM05D002263 ORTHO05D003537 4.5e-41 173.7 115 73.9
MD07G1017700 Malus domestica HOM05D002263 ORTHO05D003537 1.0e-40 172.6 115 72.2
Ciclev10030505m.g Citrus clementina HOM05D002263 ORTHO05D003537 1.7e-40 171.8 115 73.9
MBI02_g23141_MAGBIO Magnolia biondii HOM05D002263 ORTHO05D003537 1.7e-40 171.8 120 70.0
Oeu049493.1 Olea europaea HOM05D002263 ORTHO05D003537 1.7e-40 171.8 111 73.9
MSTRG.20571 Avicennia marina HOM05D002263 ORTHO05D003537 2.2e-40 171.4 115 72.2
CANSAT80G1724 Cannabis sativa HOM05D002263 ORTHO05D003537 2.2e-40 171.4 115 73.0
Migut.B01281 Erythranthe guttata HOM05D002263 ORTHO05D003537 2.2e-40 171.4 115 70.4
vmacro14860 Vaccinium macrocarpon HOM05D002263 ORTHO05D003537 2.2e-40 171.4 115 73.0
Nitab4.5_0000707g0240 Nicotiana tabacum HOM05D002263 ORTHO05D003537 3.8e-40 170.6 115 70.4
Nitab4.5_0002918g0080 Nicotiana tabacum HOM05D002263 ORTHO05D003537 3.8e-40 170.6 115 70.4
Potri.009G058900 Populus trichocarpa HOM05D002263 ORTHO05D003537 3.8e-40 170.6 115 72.2
PGSC0003DMG400006793 Solanum tuberosum HOM05D002263 ORTHO05D003537 3.8e-40 170.6 115 70.4
CAN.G219.44 Capsicum annuum HOM05D002263 ORTHO05D003537 5.0e-40 170.2 115 70.4
Solyc01g087500.3 Solanum lycopersicum HOM05D002263 ORTHO05D003537 5.0e-40 170.2 115 70.4
Sopen01g034420 Solanum pennellii HOM05D002263 ORTHO05D003537 5.0e-40 170.2 115 70.4
Peaxi162Scf00744g00349 Petunia axillaris HOM05D002263 ORTHO05D003537 6.5e-40 169.9 115 70.4
SGA_v2.0_scaffold119G32746 Striga asiatica HOM05D002263 ORTHO05D003537 6.5e-40 169.9 115 71.3
RcHm_v2.0_Chr1g0317031 Rosa chinensis HOM05D002263 ORTHO05D003537 8.5e-40 169.5 115 73.0
TWI73G0071 Tripterygium wilfordii HOM05D002263 ORTHO05D003537 1.1e-39 169.1 115 73.9
Manes.10G140100 Manihot esculenta HOM05D002263 ORTHO05D003537 1.4e-39 168.7 151 55.0
Pp3c18_20260 Physcomitrium patens HOM05D002263 ORTHO05D003537 1.4e-39 168.7 111 73.9
Pp3c18_20261 Physcomitrium patens HOM05D002263 ORTHO05D003537 1.4e-39 168.7 111 73.9
THA.LOC104820131 Tarenaya hassleriana HOM05D002263 ORTHO05D003537 1.4e-39 168.7 115 73.9
Aa31LG5G18570 Aethionema arabicum HOM05D002263 ORTHO05D003537 2.5e-39 167.9 114 71.1
CiPaw.05G149100 Carya illinoinensis HOM05D002263 ORTHO05D003537 2.5e-39 167.9 115 70.4
Prupe.2G017500 Prunus persica HOM05D002263 ORTHO05D003537 2.5e-39 167.9 115 70.4
Cfa010797 Carpinus fangiana HOM05D002263 ORTHO05D003537 5.5e-39 166.8 115 71.3
CiPaw.14G001600 Carya illinoinensis HOM05D002263 ORTHO05D003537 5.5e-39 166.8 115 69.6
Haze_03174 Corylus avellana HOM05D002263 ORTHO05D003537 7.2e-39 166.4 115 70.4
Pp3c19_3610 Physcomitrium patens HOM05D002263 ORTHO05D003537 7.2e-39 166.4 111 73.0
QL04p008074 Quercus lobata HOM05D002263 ORTHO05D003537 7.2e-39 166.4 115 71.3
QL04p008574 Quercus lobata HOM05D002263 ORTHO05D003537 7.2e-39 166.4 115 71.3
Sp7g26900 Schrenkiella parvula HOM05D002263 ORTHO05D003537 7.2e-39 166.4 115 70.4
QL04p008683 Quercus lobata HOM05D002263 ORTHO05D003537 9.4e-39 166.0 115 71.3
RcHm_v2.0_Chr1g0375001 Rosa chinensis HOM05D002263 ORTHO05D003537 9.4e-39 166.0 115 70.4
Sed0024297 Sechium edule HOM05D002263 ORTHO05D003537 9.4e-39 166.0 115 71.3
Thecc.10G041300 Theobroma cacao HOM05D002263 ORTHO05D003537 9.4e-39 166.0 115 67.8
MELO3C023986.2 Cucumis melo HOM05D002263 ORTHO05D003537 1.2e-38 165.6 115 71.3
CsaV3_3G032050 Cucumis sativus L. HOM05D002263 ORTHO05D003537 1.2e-38 165.6 115 71.3
DCAR_022381 Daucus carota HOM05D002263 ORTHO05D003537 1.2e-38 165.6 111 72.1
Thhalv10024219m.g Eutrema salsugineum HOM05D002263 ORTHO05D003537 1.2e-38 165.6 115 71.3
Mapoly0050s0134 Marchantia polymorpha HOM05D002263 ORTHO05D003537 1.2e-38 165.6 111 72.1
SalBow5G1665 Salvia bowleyana HOM05D002263 ORTHO05D003537 1.6e-38 165.2 115 67.8
BcaNung00438 Brassica carinata HOM05D002263 ORTHO05D003537 2.1e-38 164.9 115 70.4
Carub.0003s2419 Capsella rubella HOM05D002263 ORTHO05D003537 2.7e-38 164.5 112 71.4
CARHR061100 Cardamine hirsuta HOM05D002263 ORTHO05D003537 2.7e-38 164.5 112 71.4
ClCG10G012270 Citrullus lanatus HOM05D002263 ORTHO05D003537 3.6e-38 164.1 115 69.6
HanXRQChr01g0016471 Helianthus annuus HOM05D002263 ORTHO05D003537 3.6e-38 164.1 121 66.1
A01p09010 Brassica napus HOM05D002263 ORTHO05D003537 4.6e-38 163.7 111 71.2
BraA01t00849Z Brassica rapa HOM05D002263 ORTHO05D003537 4.6e-38 163.7 111 71.2
Zm00001eb188030 Zea mays HOM05D002263 ORTHO05D003537 6.1e-38 163.3 135 59.3
HanXRQChr14g0447821 Helianthus annuus HOM05D002263 ORTHO05D003537 7.9e-38 162.9 121 65.3
BcaC09g51672 Brassica carinata HOM05D002263 ORTHO05D003537 1.0e-37 162.5 111 70.3
C01p10550 Brassica napus HOM05D002263 ORTHO05D003537 1.0e-37 162.5 111 70.3
BolC1t01018H Brassica oleracea HOM05D002263 ORTHO05D003537 1.0e-37 162.5 111 70.3
BcaNung01342 Brassica carinata HOM05D002263 ORTHO05D003537 1.8e-37 161.8 111 69.4
AagrBONN_evm.TU.Sc2ySwM_344.3755 Anthoceros agrestis HOM05D002263 ORTHO05D003537 3.0e-37 161.0 109 71.6
AL3G38880 Arabidopsis lyrata HOM05D002263 ORTHO05D003537 3.0e-37 161.0 115 70.4
COL.COLO4_15049 Corchorus olitorius HOM05D002263 ORTHO05D003537 5.1e-37 160.2 115 67.8
Sed0008745 Sechium edule HOM05D002263 ORTHO05D003537 6.7e-37 159.8 115 69.6
SMO147G0130 Selaginella moellendorffii HOM05D002263 ORTHO05D003537 8.8e-37 159.5 111 67.6
SMO330G0020 Selaginella moellendorffii HOM05D002263 ORTHO05D003537 8.8e-37 159.5 111 67.6
ECA248G0809 Erigeron canadensis HOM05D002263 ORTHO05D003537 1.1e-36 159.1 121 63.6
Zm00001eb251620 Zea mays HOM05D002263 ORTHO05D003537 2.0e-36 158.3 115 64.3
AT3G23890 Arabidopsis thaliana HOM05D002263 ORTHO05D003537 2.5e-36 157.9 109 70.6
Gohir.A10G219600 Gossypium hirsutum HOM05D002263 ORTHO05D003537 2.5e-36 157.9 111 65.8
Gohir.D10G229100 Gossypium hirsutum HOM05D002263 ORTHO05D003537 2.5e-36 157.9 111 66.7
Gorai.011G261600 Gossypium raimondii HOM05D002263 ORTHO05D003537 2.5e-36 157.9 111 66.7
Duzib106G1002 Durio zibethinus HOM05D002263 ORTHO05D003537 1.3e-35 155.6 115 67.8
Lsat_1_v5_gn_1_105720 Lactuca sativa HOM05D002263 ORTHO05D003537 1.3e-35 155.6 109 67.0
Os02g0699700 Oryza sativa ssp. japonica HOM05D002263 ORTHO05D003537 1.7e-35 155.2 112 64.3
Aqoxy2G00154 Aquilegia oxysepala HOM05D002263 ORTHO05D003537 4.8e-35 153.7 111 65.8
Ca_14467_v3 Cicer arietinum L. HOM05D002263 ORTHO05D003537 4.8e-35 153.7 109 67.0
Hund15422 Selenicereus undatus HOM05D002263 ORTHO05D003537 4.8e-35 153.7 112 67.0
Ah.10g038760 Amaranthus hybridus HOM05D002263 ORTHO05D003537 6.3e-35 153.3 112 65.2
arahy.Tifrunner.gnm1.ann1.VJ5EI6 Arachis hypogaea HOM05D002263 ORTHO05D003537 6.3e-35 153.3 109 66.1
Psat7g085320 Pisum sativum HOM05D002263 ORTHO05D003537 6.3e-35 153.3 109 67.0
arahy.Tifrunner.gnm1.ann1.CKFG51 Arachis hypogaea HOM05D002263 ORTHO05D003537 8.2e-35 152.9 109 65.1
arahy.Tifrunner.gnm1.ann1.ES5MTE Arachis hypogaea HOM05D002263 ORTHO05D003537 8.2e-35 152.9 109 65.1
Glyma.10G090000 Glycine max HOM05D002263 ORTHO05D003537 1.4e-34 152.1 109 66.1
Phvul.005G024200 Phaseolus vulgaris HOM05D002263 ORTHO05D003537 1.4e-34 152.1 109 66.1
CBR_g55332 Chara braunii HOM05D002263 ORTHO05D003537 2.4e-34 151.4 115 61.7
Cre01.g009250 Chlamydomonas reinhardtii HOM05D002263 ORTHO05D003537 2.4e-34 151.4 115 58.3
TPR.G27843 Trifolium pratense HOM05D002263 ORTHO05D003537 2.4e-34 151.4 109 67.0
VMungo1080G1747 Vigna mungo HOM05D002263 ORTHO05D003537 2.4e-34 151.4 109 65.1
CiPaw.14G099000 Carya illinoinensis HOM05D002263 ORTHO05D003537 3.1e-34 151.0 124 59.7
Glyma.15G276000 Glycine max HOM05D002263 ORTHO05D003537 4.1e-34 150.6 109 65.1
TPR.G22438 Trifolium pratense HOM05D002263 ORTHO05D003537 4.1e-34 150.6 109 66.1
Medtr3g031040 Medicago truncatula HOM05D002263 ORTHO05D003537 5.3e-34 150.2 114 62.3
Oeu049004.1 Olea europaea HOM05D002263 ORTHO05D003537 9.1e-34 149.4 111 67.6
arahy.Tifrunner.gnm1.ann1.NCP65V Arachis hypogaea HOM05D002263 ORTHO05D003537 1.2e-33 149.1 109 65.1
Psat0s825g0040 Pisum sativum HOM05D002263 ORTHO05D003537 1.5e-33 148.7 109 66.1
Sc16g0001930 Simmondsia chinensis HOM05D002263 ORTHO05D003537 4.5e-33 147.1 112 62.5
MCO05G739 Micromonas commoda HOM05D002263 ORTHO05D003537 7.7e-33 146.4 115 58.3
AUR62009398 Chenopodium quinoa HOM05D002263 ORTHO05D003537 1.0e-32 146.0 112 63.4
EL10Ac2g04344 Beta vulgaris HOM05D002263 ORTHO05D003537 2.2e-32 144.8 112 62.5
Lalb_Chr19g0140281 Lupinus albus HOM05D002263 ORTHO05D003537 2.2e-32 144.8 109 63.3
AUR62023080 Chenopodium quinoa HOM05D002263 ORTHO05D003537 2.9e-32 144.4 112 62.5
HPP92_014707 Vanilla planifolia HOM05D002263 ORTHO05D003537 3.8e-32 144.1 93 74.2
Ah.06g183060 Amaranthus hybridus HOM05D002263 ORTHO05D003537 5.0e-32 143.7 134 56.7
Lj3g0016100 Lotus japonicus HOM05D002263 ORTHO05D003537 6.5e-32 143.3 109 61.5
Ah.02g122490 Amaranthus hybridus HOM05D002263 ORTHO05D003537 1.9e-31 141.7 131 56.5
PRCOL_00004802 Prasinoderma coloniale HOM05D002263 ORTHO05D003537 9.4e-31 139.4 115 54.8
SHI26139 Sapria himalayana HOM05D002263 ORTHO05D003537 2.1e-30 138.3 112 60.7
Actinidia09172 Actinidia chinensis HOM05D002263 ORTHO05D003537 9.4e-23 112.8 109 54.1
TPR.G17543 Trifolium pratense HOM05D002263 ORTHO05D003537 2.7e-22 111.3 128 39.8
RcHm_v2.0_Chr1g0380661 Rosa chinensis HOM05D002263 ORTHO05D003537 6.7e-21 106.7 102 57.8
Lj1g0019754 Lotus japonicus HOM05D002263 ORTHO05D003537 7.4e-20 103.2 109 43.1
Rhsim07G0089300 Rhododendron simsii HOM05D002263 ORTHO05D029194 2.8e-19 101.3 66 69.7
Lj4g0004129 Lotus japonicus HOM05D002263 ORTHO05D003537 6.3e-19 100.1 109 43.1
FAN25G0983 Fragaria x ananassa HOM05D002263 ORTHO05D003537 5.3e-18 97.1 108 52.8
Medtr3g085840 Medicago truncatula HOM05D002263 ORTHO05D003537 7.0e-18 96.7 121 44.6
BolC5t34561H Brassica oleracea HOM05D002263 ORTHO05D003537 9.1e-18 96.3 119 40.3
Medtr0756s0010 Medicago truncatula HOM05D002263 ORTHO05D003537 5.9e-17 93.6 151 40.4
Medtr1g075370 Medicago truncatula HOM05D002263 ORTHO05D003537 5.9e-17 93.6 110 46.4
TAR369G0234 Trochodendron aralioides HOM05D002005 ORTHO05D003757 7.7e-17 93.2 57 78.9
BcaB01g05530 Brassica carinata HOM05D002263 ORTHO05D003537 1.0e-16 92.8 117 41.9
FvH4_3g01730 Fragaria vesca HOM05D002263 ORTHO05D003537 1.3e-16 92.4 106 51.9
MD11G1007100 Malus domestica HOM05D002263 ORTHO05D003537 2.2e-16 91.7 145 37.9
C03p05180 Brassica napus HOM05D002263 ORTHO05D003537 2.9e-16 91.3 117 41.9
BolC3t13035H Brassica oleracea HOM05D002263 ORTHO05D003537 2.9e-16 91.3 117 41.9
Medtr1g051315 Medicago truncatula HOM05D002263 ORTHO05D003537 5.0e-16 90.5 117 46.2
Nn7g36258 Nelumbo nucifera HOM05D002263 ORTHO05D003537 8.5e-16 89.7 57 70.2
AL7G27330 Arabidopsis lyrata HOM05D002263 ORTHO05D003537 1.1e-15 89.4 109 37.6
Actinidia31076 Actinidia chinensis HOM05D002263 ORTHO05D003537 7.2e-15 86.7 60 68.3
Rhsim09G0080900 Rhododendron simsii HOM05D002263 ORTHO05D003537 6.1e-14 83.6 51 74.5
BcaB01g05526 Brassica carinata HOM05D002263 ORTHO05D003537 1.0e-13 82.8 110 37.3
Lsat_1_v5_gn_5_88760 Lactuca sativa HOM05D002263 ORTHO05D027778 1.5e-12 79.0 56 62.5
DCAR_029449 Daucus carota HOM05D002263 ORTHO05D029194 4.4e-12 77.4 86 48.8
QL04p008589 Quercus lobata HOM05D002263 ORTHO05D003537 3.7e-11 74.3 51 74.5
Lsat_1_v5_gn_6_66560 Lactuca sativa HOM05D002263 ORTHO05D003537 8.3e-11 73.2 52 63.5
Lj4A282T39 Lonicera japonica HOM05D002263 ORTHO05D003537 5.3e-10 70.5 94 46.8
Lj4A282G40 Lonicera japonica HOM05D002263 ORTHO05D003537 5.5e-07 60.5 39 66.7
AT2G13720 Arabidopsis thaliana HOM05D002263 ORTHO05D081494 7.2e-07 60.1 82 40.2
Rhsim09G0081000 Rhododendron simsii HOM05D002263 ORTHO05D003537 1.2e-06 59.3 39 74.4


User provided reference genes

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