Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold6G03161 Striga asiatica HOM05D001887 ORTHO05D006549 0.0e+00 1916.7 993 100.0
Migut.E01632 Erythranthe guttata HOM05D001887 ORTHO05D006549 0.0e+00 1499.6 995 78.3
Migut.E01262 Erythranthe guttata HOM05D001887 ORTHO05D006549 0.0e+00 1498.8 995 78.2
Cc08_g11250 Coffea canephora HOM05D001887 ORTHO05D006549 0.0e+00 1325.1 1006 69.9
Peaxi162Scf00301g00615 Petunia axillaris HOM05D001887 ORTHO05D006549 0.0e+00 1318.1 1019 70.4
Actinidia02198 Actinidia chinensis HOM05D001887 ORTHO05D006549 0.0e+00 1311.6 1028 68.7
PGSC0003DMG400026214 Solanum tuberosum HOM05D001887 ORTHO05D006549 0.0e+00 1308.9 1012 69.3
Nitab4.5_0004227g0030 Nicotiana tabacum HOM05D001887 ORTHO05D006549 0.0e+00 1308.1 1013 68.9
Solyc08g077800.4 Solanum lycopersicum HOM05D001887 ORTHO05D006549 0.0e+00 1302.0 1012 69.1
Nitab4.5_0003335g0030 Nicotiana tabacum HOM05D001887 ORTHO05D006549 0.0e+00 1301.6 1014 69.3
Sopen08g026310 Solanum pennellii HOM05D001887 ORTHO05D006549 0.0e+00 1295.4 1012 69.0
CAN.G572.14 Capsicum annuum HOM05D001887 ORTHO05D006549 0.0e+00 1286.9 1012 68.5
Lj8C277T15 Lonicera japonica HOM05D001887 ORTHO05D006549 0.0e+00 1285.4 1026 68.1
vmacro00747 Vaccinium macrocarpon HOM05D001887 ORTHO05D006549 0.0e+00 1284.2 1021 67.5
unitig_699.g19770 Utricularia gibba HOM05D001887 ORTHO05D006549 0.0e+00 1278.5 995 68.6
HanXRQChr01g0016001 Helianthus annuus HOM05D001887 ORTHO05D006549 0.0e+00 1268.4 1020 67.9
AUR62007171 Chenopodium quinoa HOM05D001887 ORTHO05D006549 0.0e+00 1264.6 1016 66.7
MSTRG.13777 Avicennia marina HOM05D001887 ORTHO05D006549 0.0e+00 1261.1 996 69.0
Hund14477 Selenicereus undatus HOM05D001887 ORTHO05D006549 0.0e+00 1247.6 1030 65.7
GSVIVG01002051001 Vitis vinifera HOM05D001887 ORTHO05D006549 0.0e+00 1235.7 1004 66.9
Rhsim07G0136100 Rhododendron simsii HOM05D001887 ORTHO05D006549 0.0e+00 1233.8 1196 58.3
TWI81G0509 Tripterygium wilfordii HOM05D001887 ORTHO05D006549 0.0e+00 1231.9 1022 65.4
ECA246G2103 Erigeron canadensis HOM05D001887 ORTHO05D006549 0.0e+00 1231.5 1012 66.5
Lj2g0012346 Lotus japonicus HOM05D001887 ORTHO05D006549 0.0e+00 1228.4 1011 66.0
VMungo1215G0420 Vigna mungo HOM05D001887 ORTHO05D006549 0.0e+00 1226.1 1021 66.4
Lsat_1_v5_gn_3_15381 Lactuca sativa HOM05D001887 ORTHO05D006549 0.0e+00 1225.7 1021 65.5
Glyma.11G038500 Glycine max HOM05D001887 ORTHO05D006549 0.0e+00 1220.7 1023 64.9
EL10Ac5g12260 Beta vulgaris HOM05D001887 ORTHO05D006549 0.0e+00 1214.1 1054 63.7
QL12p008620 Quercus lobata HOM05D001887 ORTHO05D006549 0.0e+00 1212.2 1009 65.2
Lalb_Chr09g0324141 Lupinus albus HOM05D001887 ORTHO05D006549 0.0e+00 1207.6 1018 65.0
Manes.01G089700 Manihot esculenta HOM05D001887 ORTHO05D006549 0.0e+00 1207.6 1022 64.1
ClCG09G012670 Citrullus lanatus HOM05D001887 ORTHO05D006549 0.0e+00 1206.8 1068 62.0
Potri.001G150400 Populus trichocarpa HOM05D001887 ORTHO05D006549 0.0e+00 1206.8 1031 64.3
Ca_24613_v3 Cicer arietinum L. HOM05D001887 ORTHO05D006549 0.0e+00 1204.9 1079 62.7
CANSAT21G2194 Cannabis sativa HOM05D001887 ORTHO05D006549 0.0e+00 1204.1 1016 63.9
arahy.Tifrunner.gnm1.ann1.B9CQCD Arachis hypogaea HOM05D001887 ORTHO05D006549 0.0e+00 1203.3 1013 65.1
arahy.Tifrunner.gnm1.ann1.HW9JRE Arachis hypogaea HOM05D001887 ORTHO05D006549 0.0e+00 1203.3 1013 65.1
CiPaw.11G072100 Carya illinoinensis HOM05D001887 ORTHO05D006549 0.0e+00 1203.0 1024 65.2
Sed0013079 Sechium edule HOM05D001887 ORTHO05D006549 0.0e+00 1203.0 1060 62.6
TAR636G0264 Trochodendron aralioides HOM05D001887 ORTHO05D006549 0.0e+00 1201.0 1022 63.4
THA.LOC104807928 Tarenaya hassleriana HOM05D001887 ORTHO05D006549 0.0e+00 1199.9 1011 64.4
CsaV3_3G049790 Cucumis sativus L. HOM05D001887 ORTHO05D006549 0.0e+00 1199.1 1066 61.7
Medtr5g013480 Medicago truncatula HOM05D001887 ORTHO05D006549 0.0e+00 1194.1 1021 63.7
Ah.07g199260 Amaranthus hybridus HOM05D001887 ORTHO05D006549 0.0e+00 1191.0 1011 64.1
Ciclev10024418m.g Citrus clementina HOM05D001887 ORTHO05D006549 0.0e+00 1191.0 1013 64.1
Aqoxy7G00853 Aquilegia oxysepala HOM05D001887 ORTHO05D006549 0.0e+00 1189.9 1014 64.0
Thecc.03G239300 Theobroma cacao HOM05D001887 ORTHO05D006549 0.0e+00 1188.7 1011 64.5
MBI04_g38561_MAGBIO Magnolia biondii HOM05D001887 ORTHO05D006549 0.0e+00 1187.2 1045 61.6
MELO3C003338.2 Cucumis melo HOM05D001887 ORTHO05D006549 0.0e+00 1186.0 1059 61.6
Nn1g00744 Nelumbo nucifera HOM05D001887 ORTHO05D006549 0.0e+00 1184.5 1054 62.6
Cfa012332 Carpinus fangiana HOM05D001887 ORTHO05D006549 0.0e+00 1180.2 1006 64.6
AUR62018833 Chenopodium quinoa HOM05D001887 ORTHO05D006549 0.0e+00 1178.3 1010 63.7
Prupe.5G054900 Prunus persica HOM05D001887 ORTHO05D006549 0.0e+00 1176.8 1084 61.3
PGR042G1059 Punica granatum HOM05D001887 ORTHO05D006549 0.0e+00 1174.8 1009 62.8
Haze_08360 Corylus avellana HOM05D001887 ORTHO05D006549 0.0e+00 1173.3 1027 63.6
A04p14190 Brassica napus HOM05D001887 ORTHO05D006549 0.0e+00 1172.5 1007 63.7
DCAR_000656 Daucus carota HOM05D001887 ORTHO05D006549 0.0e+00 1172.1 1008 63.2
Gorai.004G191700 Gossypium raimondii HOM05D001887 ORTHO05D006549 0.0e+00 1168.7 1011 63.3
BcaC02g08980 Brassica carinata HOM05D001887 ORTHO05D006549 0.0e+00 1168.3 1006 63.1
BolC4t26415H Brassica oleracea HOM05D001887 ORTHO05D006549 0.0e+00 1168.3 1006 63.1
C04p48230 Brassica napus HOM05D001887 ORTHO05D006549 0.0e+00 1167.1 1006 63.1
FvH4_5g20470 Fragaria vesca HOM05D001887 ORTHO05D006549 0.0e+00 1167.1 1072 61.8
BraA04t17079Z Brassica rapa HOM05D001887 ORTHO05D006549 0.0e+00 1165.6 1006 63.2
MD06G1046600 Malus domestica HOM05D001887 ORTHO05D006549 0.0e+00 1165.2 1096 60.6
Thhalv10027633m.g Eutrema salsugineum HOM05D001887 ORTHO05D006549 0.0e+00 1164.8 1001 63.1
Gohir.D08G182700 Gossypium hirsutum HOM05D001887 ORTHO05D006549 0.0e+00 1164.1 1011 62.9
BcaB06g27602 Brassica carinata HOM05D001887 ORTHO05D006549 0.0e+00 1159.1 1006 62.4
RcHm_v2.0_Chr7g0205791 Rosa chinensis HOM05D001887 ORTHO05D006549 0.0e+00 1158.3 1078 60.8
AL7G48350 Arabidopsis lyrata HOM05D001887 ORTHO05D006549 0.0e+00 1156.7 1001 63.7
SpUn0010_0230 Schrenkiella parvula HOM05D001887 ORTHO05D006549 0.0e+00 1156.0 1012 62.8
CARHR213220 Cardamine hirsuta HOM05D001887 ORTHO05D006549 0.0e+00 1155.6 1017 63.3
Sp7g00750 Schrenkiella parvula HOM05D001887 ORTHO05D006549 0.0e+00 1155.6 1009 62.8
AL7G48280 Arabidopsis lyrata HOM05D001887 ORTHO05D006549 0.0e+00 1154.4 1001 63.1
Eucgr.E00349 Eucalyptus grandis HOM05D001887 ORTHO05D006549 0.0e+00 1152.5 1021 62.1
Carub.0007s3432 Capsella rubella HOM05D001887 ORTHO05D006549 0.0e+00 1151.3 1017 62.3
AT5G41150 Arabidopsis thaliana HOM05D001887 ORTHO05D006549 0.0e+00 1148.7 1001 62.9
FAN18G1605 Fragaria x ananassa HOM05D001887 ORTHO05D006549 0.0e+00 1146.0 1068 61.1
Aa31LG9G15130 Aethionema arabicum HOM05D001887 ORTHO05D006549 0.0e+00 1120.1 1005 62.2
PSO675G3297 Papaver somniferum HOM05D001887 ORTHO05D006549 0.0e+00 1109.4 1025 59.8
Duzib205G1274 Durio zibethinus HOM05D001887 ORTHO05D006549 0.0e+00 1105.5 1018 60.6
CSS0023599 Camellia sinensis var. sinensis HOM05D001887 ORTHO05D006549 0.0e+00 1097.4 865 68.7
Dinv25138 Davidia involucrata HOM05D001887 ORTHO05D006549 0.0e+00 1078.2 879 66.2
HPP92_001389 Vanilla planifolia HOM05D001887 ORTHO05D006549 0.0e+00 1076.6 1034 56.7
CDE02G0676 Ceratophyllum demersum HOM05D001887 ORTHO05D006549 8.2e-308 1060.4 1024 58.0
Oeu028057.3 Olea europaea HOM05D001887 ORTHO05D006549 1.1e-304 1050.0 1003 60.8
Os03g0100400 Oryza sativa ssp. japonica HOM05D001887 ORTHO05D006549 1.0e-302 1043.5 1026 56.9
Gohir.A08G162700 Gossypium hirsutum HOM05D001887 ORTHO05D006549 3.7e-300 1035.0 939 61.4
Zm00001eb208390 Zea mays HOM05D001887 ORTHO05D006549 5.5e-296 1021.1 1030 56.4
COL.COLO4_06683 Corchorus olitorius HOM05D001887 ORTHO05D006549 5.2e-294 1014.6 861 65.3
SalBow1G4075 Salvia bowleyana HOM05D001887 ORTHO05D006549 3.0e-286 988.8 713 74.6
FAN13G0006 Fragaria x ananassa HOM05D001887 ORTHO05D006549 7.7e-282 974.2 918 60.6
Mapoly0007s0092 Marchantia polymorpha HOM05D001887 ORTHO05D006549 8.0e-271 937.6 1086 49.4
AagrBONN_evm.TU.Sc2ySwM_344.3532 Anthoceros agrestis HOM05D001887 ORTHO05D006549 3.0e-265 919.1 1031 50.4
Pp3c18_11670 Physcomitrium patens HOM05D001887 ORTHO05D006549 1.1e-254 884.0 1075 48.4
SMO118G0017 Selaginella moellendorffii HOM05D001887 ORTHO05D006549 3.7e-252 875.5 1004 49.6
Psat2g175720 Pisum sativum HOM05D001887 ORTHO05D006549 7.1e-243 844.7 1021 50.4
Sc01g0007960 Simmondsia chinensis HOM05D001887 ORTHO05D006549 6.0e-242 841.6 787 59.7
Hma1.2p1_3159F.1_g333410 Hydrangea macrophylla HOM05D001887 ORTHO05D006549 6.9e-206 721.8 834 52.6
Phvul.002G001900 Phaseolus vulgaris HOM05D001887 ORTHO05D006549 2.8e-199 699.9 612 64.1
MBI04_g36289_MAGBIO Magnolia biondii HOM05D001887 ORTHO05D006549 8.8e-193 678.3 970 44.0
ATR0665G232 Amborella trichopoda HOM05D001887 ORTHO05D006549 3.7e-191 672.9 619 60.1
Sabra01G0120200 Salix brachista HOM05D001887 ORTHO05D006549 2.6e-181 640.2 570 64.2
TPR.G31429 Trifolium pratense HOM05D001887 ORTHO05D006549 8.0e-170 602.1 682 52.5
SEGI_01687 Sequoiadendron giganteum HOM05D001887 ORTHO05D006549 2.6e-160 570.5 570 56.1
MCO16G346 Micromonas commoda HOM05D001887 ORTHO05D006549 2.8e-154 550.4 1005 34.4
SHI07797 Sapria himalayana HOM05D001887 ORTHO05D006549 1.6e-133 481.5 399 61.7
SalBow1G0188 Salvia bowleyana HOM05D001887 ORTHO05D006549 6.0e-125 453.0 278 83.1
CBR_g39228 Chara braunii HOM05D001887 ORTHO05D006549 2.3e-124 451.1 372 61.3
Cpa.g.c28699.1 Carica papaya HOM05D001887 ORTHO05D006549 1.7e-119 434.9 263 82.1
Cfa026920 Carpinus fangiana HOM05D001887 ORTHO05D006549 8.4e-119 432.6 1025 31.6
SEGI_02234 Sequoiadendron giganteum HOM05D001887 ORTHO05D006549 1.0e-116 425.6 342 63.7
HPP92_012638 Vanilla planifolia HOM05D001887 ORTHO05D006549 5.1e-116 423.3 321 65.1
TPR.G31432 Trifolium pratense HOM05D001887 ORTHO05D006549 1.4e-113 415.2 265 78.5
Cpa.g.sc98.72 Carica papaya HOM05D001887 ORTHO05D006549 1.1e-110 405.6 286 72.4
ATR0107G001 Amborella trichopoda HOM05D001887 ORTHO05D006549 1.2e-104 385.6 358 58.7
PRCOL_00000830 Prasinoderma coloniale HOM05D001887 ORTHO05D006549 4.5e-104 383.6 952 31.5
Cre06.g311400 Chlamydomonas reinhardtii HOM05D001887 ORTHO05D006549 1.1e-102 379.0 1338 26.6
CBR_g69645 Chara braunii HOM05D001887 ORTHO05D006549 2.4e-97 361.3 346 53.5
HPP92_013056 Vanilla planifolia HOM05D001887 ORTHO05D006549 1.1e-83 315.8 308 53.9
Atru.chr9.1200 Acer truncatum HOM05D001887 ORTHO05D006549 2.7e-77 294.7 173 82.7
Psat5g140400 Pisum sativum HOM05D001887 ORTHO05D006549 1.9e-70 271.9 222 65.8
HPP92_027917 Vanilla planifolia HOM05D001887 ORTHO05D006549 2.3e-68 265.0 193 68.9
HPP92_028226 Vanilla planifolia HOM05D001887 ORTHO05D006549 6.7e-68 263.5 267 54.7
GSVIVG01002647001 Vitis vinifera HOM05D001887 ORTHO05D006549 2.4e-65 255.0 145 86.9
HPP92_000025 Vanilla planifolia HOM05D001887 ORTHO05D006549 2.9e-55 221.5 146 71.9
Psat4g195160 Pisum sativum HOM05D000527 ORTHO05D000559 1.9e-54 218.8 147 73.5
HPP92_000026 Vanilla planifolia HOM05D001887 ORTHO05D006549 9.4e-54 216.5 194 61.9
Atru.chr9.1202 Acer truncatum HOM05D001887 ORTHO05D006549 3.7e-50 204.5 166 65.7
HPP92_028027 Vanilla planifolia HOM05D001887 ORTHO05D006549 1.3e-47 196.1 131 71.0
Sed0025805 Sechium edule HOM05D001887 ORTHO05D006549 1.2e-45 189.5 214 53.3
HPP92_002782 Vanilla planifolia HOM05D001887 ORTHO05D006549 2.8e-45 188.3 131 68.7
Atru.chr9.1201 Acer truncatum HOM05D001887 ORTHO05D006549 4.7e-45 187.6 213 49.8
Glyma.01G204533 Glycine max HOM05D001887 ORTHO05D006549 1.0e-44 186.4 104 86.5
Psat5g084960 Pisum sativum HOM05D001887 ORTHO05D006549 3.1e-41 174.9 161 59.0
Atru.chr9.1203 Acer truncatum HOM05D001887 ORTHO05D006549 4.1e-41 174.5 103 81.6
HPP92_028028 Vanilla planifolia HOM05D001887 ORTHO05D006549 7.3e-38 163.7 146 57.5
MD04G1054800 Malus domestica HOM05D001887 ORTHO05D006549 1.4e-36 159.5 122 69.7
HPP92_028029 Vanilla planifolia HOM05D001887 ORTHO05D006549 4.4e-35 154.5 101 73.3
AagrBONN_evm.TU.Sc2ySwM_362.220 Anthoceros agrestis HOM05D001887 ORTHO05D006549 3.4e-27 128.3 85 68.2
AagrBONN_evm.TU.Sc2ySwM_344.3537 Anthoceros agrestis HOM05D001887 ORTHO05D006549 4.9e-26 124.4 177 41.2
Psat7g123840 Pisum sativum HOM05D001887 ORTHO05D006549 4.9e-26 124.4 202 42.6
Psat3g155360 Pisum sativum HOM05D000527 ORTHO05D325619 2.3e-23 115.5 85 64.7
Psat0s3354g0040 Pisum sativum HOM05D001887 ORTHO05D006549 5.6e-22 110.9 137 49.6
CDE11G1156 Ceratophyllum demersum HOM05D001409 ORTHO05D129850 3.9e-15 88.2 42 97.6
Glyma.01G204467 Glycine max HOM05D001887 ORTHO05D215531 3.0e-07 62.0 45 71.1
AagrBONN_evm.TU.Sc2ySwM_362.221 Anthoceros agrestis HOM05D001887 ORTHO05D070959 3.3e-06 58.5 56 48.2


User provided reference genes

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