Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold68G22803 Striga asiatica HOM05D005235 ORTHO05D006938 5.0e-274 947.2 490 100.0
SalBow4G1042 Salvia bowleyana HOM05D005235 ORTHO05D006938 2.0e-198 696.0 493 75.3
Migut.N01688 Erythranthe guttata HOM05D005235 ORTHO05D006938 2.2e-189 666.0 495 71.7
Oeu061455.1 Olea europaea HOM05D005235 ORTHO05D006938 1.2e-187 660.2 507 70.2
Migut.O00424 Erythranthe guttata HOM05D005235 ORTHO05D006938 2.1e-187 659.4 494 71.5
unitig_22.g5329 Utricularia gibba HOM05D005235 ORTHO05D006938 1.9e-185 652.9 496 70.4
Cc03_g16140 Coffea canephora HOM05D005235 ORTHO05D006938 1.3e-184 650.2 471 71.5
Dinv25083 Davidia involucrata HOM05D005235 ORTHO05D006938 2.4e-183 646.0 440 74.8
FvH4_6g39550 Fragaria vesca HOM05D005235 ORTHO05D006938 5.9e-182 641.3 445 73.5
CAN.G192.3 Capsicum annuum HOM05D005235 ORTHO05D006938 2.9e-181 639.0 444 73.2
RcHm_v2.0_Chr7g0221241 Rosa chinensis HOM05D005235 ORTHO05D006938 2.9e-181 639.0 449 73.7
PGR142G4255 Punica granatum HOM05D005235 ORTHO05D006938 5.0e-181 638.3 438 73.7
FAN13G2026 Fragaria x ananassa HOM05D005235 ORTHO05D006938 9.4e-180 634.0 445 72.6
FvH4_5g28930 Fragaria vesca HOM05D005235 ORTHO05D006938 3.6e-179 632.1 445 72.1
Potri.014G140400 Populus trichocarpa HOM05D005235 ORTHO05D006938 4.6e-179 631.7 452 70.8
Eucgr.I01565 Eucalyptus grandis HOM05D005235 ORTHO05D006938 1.0e-178 630.6 489 67.7
Gohir.D01G037300 Gossypium hirsutum HOM05D005235 ORTHO05D006938 1.0e-178 630.6 448 71.4
Gorai.002G045400 Gossypium raimondii HOM05D005235 ORTHO05D006938 1.4e-178 630.2 448 71.4
MD15G1428200 Malus domestica HOM05D005235 ORTHO05D006938 1.8e-178 629.8 476 68.5
Lsat_1_v5_gn_6_15261 Lactuca sativa HOM05D005235 ORTHO05D006938 2.3e-178 629.4 444 71.4
Manes.04G096400 Manihot esculenta HOM05D005235 ORTHO05D006938 2.3e-178 629.4 517 64.8
Gohir.A01G046600 Gossypium hirsutum HOM05D005235 ORTHO05D006938 5.1e-178 628.2 448 71.2
MD08G1236200 Malus domestica HOM05D005235 ORTHO05D006938 5.1e-178 628.2 446 71.3
VMungo0647G1084 Vigna mungo HOM05D005235 ORTHO05D006938 5.1e-178 628.2 486 67.5
Solyc07g008530.1 Solanum lycopersicum HOM05D005235 ORTHO05D006938 6.7e-178 627.9 448 71.4
Atru.BG.29.p Acer truncatum HOM05D005235 ORTHO05D006938 1.5e-177 626.7 438 72.6
Sabra14G0105800 Salix brachista HOM05D005235 ORTHO05D006938 1.5e-177 626.7 516 64.1
Sc01g0007490 Simmondsia chinensis HOM05D005235 ORTHO05D006938 1.5e-177 626.7 447 69.6
Sopen07g004450 Solanum pennellii HOM05D005235 ORTHO05D006938 2.5e-177 625.9 448 71.2
HanXRQChr08g0226751 Helianthus annuus HOM05D005235 ORTHO05D006938 3.3e-177 625.5 469 68.0
Peaxi162Scf01038g00005 Petunia axillaris HOM05D005235 ORTHO05D006938 3.3e-177 625.5 464 69.4
Haze_25416 Corylus avellana HOM05D005235 ORTHO05D006938 9.7e-177 624.0 444 71.2
COL.COLO4_17457 Corchorus olitorius HOM05D005235 ORTHO05D000503 1.3e-176 623.6 448 70.1
TPR.G24949 Trifolium pratense HOM05D005235 ORTHO05D006938 2.2e-176 622.9 486 66.7
EL10Ac7g16931 Beta vulgaris HOM05D005235 ORTHO05D006938 3.7e-176 622.1 440 70.5
Prupe.1G572900 Prunus persica HOM05D005235 ORTHO05D006938 4.8e-176 621.7 445 70.3
FAN18G1214 Fragaria x ananassa HOM05D005235 ORTHO05D006938 6.3e-176 621.3 437 72.1
Glyma.14G202100 Glycine max HOM05D005235 ORTHO05D006938 6.3e-176 621.3 445 71.5
arahy.Tifrunner.gnm1.ann1.0Z73T7 Arachis hypogaea HOM05D005235 ORTHO05D006938 1.1e-175 620.5 446 70.2
Psat5g150600 Pisum sativum HOM05D005235 ORTHO05D006938 1.1e-175 620.5 489 65.8
THA.LOC104820931 Tarenaya hassleriana HOM05D005235 ORTHO05D006938 1.1e-175 620.5 452 67.9
Lalb_Chr15g0085971 Lupinus albus HOM05D005235 ORTHO05D006938 1.4e-175 620.2 453 70.4
Lj3g0002085 Lotus japonicus HOM05D005235 ORTHO05D006938 1.8e-175 619.8 515 64.7
PGSC0003DMG400022992 Solanum tuberosum HOM05D005235 ORTHO05D006938 1.8e-175 619.8 527 63.8
Ah.08g210620 Amaranthus hybridus HOM05D005235 ORTHO05D006938 3.1e-175 619.0 441 69.8
Ciclev10015023m.g Citrus clementina HOM05D005235 ORTHO05D006938 3.1e-175 619.0 443 69.8
Rhsim08G0037300 Rhododendron simsii HOM05D005235 ORTHO05D006938 3.1e-175 619.0 493 66.5
Aqoxy1G00862 Aquilegia oxysepala HOM05D005235 ORTHO05D006938 4.1e-175 618.6 466 68.2
Nitab4.5_0000491g0060 Nicotiana tabacum HOM05D005235 ORTHO05D006938 5.3e-175 618.2 447 69.8
CSS0000006 Camellia sinensis var. sinensis HOM05D005235 ORTHO05D006938 6.9e-175 617.8 445 73.5
CSS0008907 Camellia sinensis var. sinensis HOM05D005235 ORTHO05D006938 6.9e-175 617.8 445 73.5
Cfa002235 Carpinus fangiana HOM05D005235 ORTHO05D006938 6.9e-175 617.8 444 70.5
Duzib213G0463 Durio zibethinus HOM05D005235 ORTHO05D006938 6.9e-175 617.8 448 69.9
ClCG07G017190 Citrullus lanatus HOM05D005235 ORTHO05D006938 9.1e-175 617.5 444 70.7
Thecc.07G135900 Theobroma cacao HOM05D005235 ORTHO05D006938 9.1e-175 617.5 442 70.8
CsaV3_4G004390 Cucumis sativus L. HOM05D005235 ORTHO05D006938 1.2e-174 617.1 440 70.9
Nitab4.5_0000949g0050 Nicotiana tabacum HOM05D005235 ORTHO05D006938 1.2e-174 617.1 450 69.8
TAR626G0946 Trochodendron aralioides HOM05D005235 ORTHO05D006938 1.2e-174 617.1 546 61.7
FAN08G3020 Fragaria x ananassa HOM05D005235 ORTHO05D006938 1.5e-174 616.7 445 71.5
Medtr3g466250 Medicago truncatula HOM05D005235 ORTHO05D006938 1.5e-174 616.7 465 67.7
arahy.Tifrunner.gnm1.ann1.354T1Y Arachis hypogaea HOM05D005235 ORTHO05D006938 2.0e-174 616.3 507 64.5
MELO3C017627.2 Cucumis melo HOM05D005235 ORTHO05D006938 2.0e-174 616.3 440 70.5
Lj6g0011193 Lotus japonicus HOM05D005235 ORTHO05D006938 2.0e-174 616.3 508 64.4
Sed0026739 Sechium edule HOM05D005235 ORTHO05D006938 2.6e-174 615.9 499 65.5
CiPaw.03G253600 Carya illinoinensis HOM05D005235 ORTHO05D006938 1.0e-173 614.0 440 70.7
Medtr4g121070 Medicago truncatula HOM05D005235 ORTHO05D006938 1.3e-173 613.6 452 68.6
vmacro22930 Vaccinium macrocarpon HOM05D005235 ORTHO05D006938 1.7e-173 613.2 470 67.2
CANSAT21G0039 Cannabis sativa HOM05D005235 ORTHO05D006938 2.9e-173 612.5 439 71.5
Ca_15026_v3 Cicer arietinum L. HOM05D005235 ORTHO05D006938 2.9e-173 612.5 492 65.2
ECA233G3576 Erigeron canadensis HOM05D005235 ORTHO05D006938 3.8e-173 612.1 441 69.4
Phvul.008G249300 Phaseolus vulgaris HOM05D005235 ORTHO05D006938 3.8e-173 612.1 442 70.1
QL10p019537 Quercus lobata HOM05D005235 ORTHO05D006938 5.0e-173 611.7 512 64.5
TWI32G1353 Tripterygium wilfordii HOM05D005235 ORTHO05D006938 5.0e-173 611.7 435 70.6
AUR62033498 Chenopodium quinoa HOM05D005235 ORTHO05D006938 6.5e-173 611.3 441 68.5
AL3G12040 Arabidopsis lyrata HOM05D005235 ORTHO05D006938 8.5e-173 610.9 444 69.8
CARHR076660 Cardamine hirsuta HOM05D005235 ORTHO05D006938 8.5e-173 610.9 444 69.6
Nn6g33287 Nelumbo nucifera HOM05D005235 ORTHO05D006938 1.9e-172 609.8 471 67.9
AT3G02660 Arabidopsis thaliana HOM05D005235 ORTHO05D006938 4.2e-172 608.6 443 69.5
PSO566G0178 Papaver somniferum HOM05D005235 ORTHO05D006938 2.1e-171 606.3 446 68.4
AUR62028546 Chenopodium quinoa HOM05D005235 ORTHO05D006938 6.1e-171 604.7 441 67.6
Hund00893 Selenicereus undatus HOM05D005235 ORTHO05D006938 1.0e-170 604.0 438 68.3
PSO173G0108 Papaver somniferum HOM05D005235 ORTHO05D006938 1.4e-170 603.6 448 67.4
Glyma.02G234500 Glycine max HOM05D005235 ORTHO05D006938 5.1e-170 601.7 514 63.8
BNapus_Darmor_BZH_scaffold_122p00160 Brassica napus HOM05D005235 ORTHO05D006938 1.1e-169 600.5 442 68.1
Actinidia37705 Actinidia chinensis HOM05D005235 ORTHO05D006938 2.0e-169 599.7 438 70.3
BNapus_Darmor_BZH_scaffold_99p00190 Brassica napus HOM05D005235 ORTHO05D006938 2.0e-169 599.7 442 68.1
A03p33070 Brassica napus HOM05D005235 ORTHO05D006938 2.6e-169 599.4 443 67.9
Thhalv10020578m.g Eutrema salsugineum HOM05D005235 ORTHO05D006938 2.6e-169 599.4 442 67.6
BraA03t12477Z Brassica rapa HOM05D005235 ORTHO05D006938 3.3e-169 599.0 443 67.7
DCAR_005998 Daucus carota HOM05D005235 ORTHO05D006938 5.7e-169 598.2 441 67.1
BcaC01g04429 Brassica carinata HOM05D005235 ORTHO05D006938 9.7e-169 597.4 443 67.9
BolC3t16290H Brassica oleracea HOM05D005235 ORTHO05D006938 9.7e-169 597.4 443 67.9
BraA01t04625Z Brassica rapa HOM05D005235 ORTHO05D006938 9.7e-169 597.4 442 67.9
BolC1t05885H Brassica oleracea HOM05D005235 ORTHO05D006938 2.8e-168 595.9 444 66.9
Sp3g01700 Schrenkiella parvula HOM05D005235 ORTHO05D006938 5.3e-167 591.7 445 66.7
Aa31LG5G13140 Aethionema arabicum HOM05D005235 ORTHO05D006938 1.5e-166 590.1 447 66.4
Os01g0500900 Oryza sativa ssp. japonica HOM05D005235 ORTHO05D006938 1.2e-163 580.5 466 64.4
Lj8A333T11 Lonicera japonica HOM05D005235 ORTHO05D006938 6.7e-162 574.7 444 68.5
CDE05G2156 Ceratophyllum demersum HOM05D005235 ORTHO05D006938 4.4e-161 572.0 455 64.6
Zm00001eb080850 Zea mays HOM05D005235 ORTHO05D006938 4.4e-161 572.0 514 59.5
CDE05G0570 Ceratophyllum demersum HOM05D005235 ORTHO05D006938 5.3e-159 565.1 454 63.4
ATR0021G047 Amborella trichopoda HOM05D005235 ORTHO05D006938 7.0e-159 564.7 497 59.2
MBI04_g19169_MAGBIO Magnolia biondii HOM05D005235 ORTHO05D006938 3.5e-158 562.4 587 54.0
Nitab4.5_0004867g0070 Nicotiana tabacum HOM05D000907 ORTHO05D000753 1.4e-154 550.4 446 65.5
Pp3c3_3070 Physcomitrium patens HOM05D005235 ORTHO05D006938 1.3e-152 543.9 439 62.2
SMO200G0177 Selaginella moellendorffii HOM05D005235 ORTHO05D006938 4.5e-150 535.4 483 56.5
Mapoly0163s0012 Marchantia polymorpha HOM05D005235 ORTHO05D006938 1.7e-149 533.5 449 59.9
AagrBONN_evm.TU.Sc2ySwM_368.429 Anthoceros agrestis HOM05D005235 ORTHO05D006938 5.0e-149 531.9 447 60.2
BcaB04g19392 Brassica carinata HOM05D005235 ORTHO05D006938 4.9e-144 515.4 480 58.5
MCO13G625 Micromonas commoda HOM05D005235 ORTHO05D006938 1.5e-140 503.8 445 56.0
Cre13.g606050 Chlamydomonas reinhardtii HOM05D005235 ORTHO05D006938 4.7e-139 498.8 441 57.6
SEGI_38902 Sequoiadendron giganteum HOM05D005235 ORTHO05D006938 1.8e-135 486.9 390 64.4
PRCOL_00003633 Prasinoderma coloniale HOM05D005235 ORTHO05D006938 2.3e-133 479.9 496 51.4
TAR633G2758 Trochodendron aralioides HOM05D005235 ORTHO05D006938 1.5e-132 477.2 330 72.7
GSVIVG01023528001 Vitis vinifera HOM05D005235 ORTHO05D006938 4.7e-131 472.2 482 55.8
CBR_g10848 Chara braunii HOM05D005235 ORTHO05D006938 1.0e-130 471.1 481 51.6
FAN05G2159 Fragaria x ananassa HOM05D005235 ORTHO05D006938 3.1e-130 469.5 471 56.7
arahy.Tifrunner.gnm1.ann1.M0UG3B Arachis hypogaea HOM05D005235 ORTHO05D006938 4.4e-121 439.1 502 51.6
arahy.Tifrunner.gnm1.ann1.8HX8KM Arachis hypogaea HOM05D005235 ORTHO05D006938 3.1e-114 416.4 425 53.6
Actinidia19541 Actinidia chinensis HOM05D005235 ORTHO05D006938 1.1e-106 391.3 497 48.7
FAN04G0607 Fragaria x ananassa HOM05D005235 ORTHO05D006938 7.9e-94 348.6 246 72.4
Pp3s58_130 Physcomitrium patens HOM05D005235 ORTHO05D006938 9.3e-87 325.1 434 39.9
BolC1t05886H Brassica oleracea HOM05D005235 ORTHO05D006938 1.2e-78 298.1 418 43.5
Dinv11903 Davidia involucrata HOM05D005235 ORTHO05D006938 1.4e-71 274.6 366 47.5
HPP92_015556 Vanilla planifolia HOM05D005235 ORTHO05D006938 7.9e-70 268.9 247 55.9
C03p40250 Brassica napus HOM05D005235 ORTHO05D006938 1.5e-68 264.6 189 69.8
BNapus_Darmor_BZH_scaffold_133p00140 Brassica napus HOM05D005235 ORTHO05D032674 1.3e-64 251.5 241 57.3
Cfa027221 Carpinus fangiana HOM05D004159 ORTHO05D006938 2.5e-63 247.3 450 34.4
Haze_27256 Corylus avellana HOM05D005235 ORTHO05D006938 5.5e-63 246.1 292 43.5
BcaC09g47648 Brassica carinata HOM05D005235 ORTHO05D032674 4.1e-58 229.9 348 44.0
HPP92_015557 Vanilla planifolia HOM05D005235 ORTHO05D006938 5.0e-56 223.0 185 62.7
FAN04G0381 Fragaria x ananassa HOM05D005235 ORTHO05D006938 7.0e-50 202.6 156 67.9
Oeu046079.2 Olea europaea HOM05D002040 ORTHO05D002502 4.5e-49 199.9 401 38.2
BraA01t04657Z Brassica rapa HOM05D005235 ORTHO05D032674 2.0e-36 157.9 144 59.0
CDE05G3313 Ceratophyllum demersum HOM05D005235 ORTHO05D006938 9.1e-34 149.1 116 62.1
FAN09G2876 Fragaria x ananassa HOM05D005235 ORTHO05D006938 5.2e-29 133.3 97 66.0
Oeu059313.1 Olea europaea HOM05D005235 ORTHO05D006938 2.0e-25 121.3 98 61.2
SEGI_05348 Sequoiadendron giganteum HOM05D005235 ORTHO05D006938 4.0e-21 107.1 66 74.2
SEGI_33043 Sequoiadendron giganteum HOM05D005235 ORTHO05D008256 1.4e-18 98.6 70 62.9
arahy.Tifrunner.gnm1.ann1.J19R9Y Arachis hypogaea HOM05D005235 ORTHO05D038945 5.0e-16 90.1 58 75.9
Thecc.07G136200 Theobroma cacao HOM05D005235 ORTHO05D006938 6.6e-16 89.7 71 66.2
Oeu038380.1 Olea europaea HOM05D007843 ORTHO05D003639 1.5e-15 88.6 59 72.9
TAR633G1966 Trochodendron aralioides HOM05D005235 ORTHO05D006938 7.3e-15 86.3 136 44.9
BNapus_Darmor_BZH_scaffold_119p00120 Brassica napus HOM05D005235 ORTHO05D006938 4.7e-14 83.6 87 55.2
BNapus_Darmor_BZH_scaffold_97p00310 Brassica napus HOM05D005235 ORTHO05D006938 4.7e-14 83.6 87 55.2
Nn1g04561 Nelumbo nucifera HOM05D005235 ORTHO05D038945 1.3e-11 75.5 75 56.0
BolC1t05887H Brassica oleracea HOM05D005235 ORTHO05D014124 2.0e-09 68.2 71 53.5


User provided reference genes

Program Settings