Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold62G21604 Striga asiatica HOM05D004528 ORTHO05D005815 8.4e-230 800.0 415 100.0
MSTRG.17774 Avicennia marina HOM05D004528 ORTHO05D005815 5.1e-211 737.6 415 90.6
Migut.J00603 Erythranthe guttata HOM05D004528 ORTHO05D005815 4.3e-210 734.6 415 90.4
SalBow6G2464 Salvia bowleyana HOM05D004528 ORTHO05D005815 4.8e-209 731.1 415 89.2
Cc06_g11330 Coffea canephora HOM05D004528 ORTHO05D005815 3.5e-204 714.9 414 87.9
Oeu018425.1 Olea europaea HOM05D004528 ORTHO05D005815 8.1e-201 703.7 415 88.2
GSVIVG01015212001 Vitis vinifera HOM05D004528 ORTHO05D005815 1.3e-195 686.4 413 83.8
Lj7A674G30 Lonicera japonica HOM05D004528 ORTHO05D005815 1.8e-195 686.0 409 85.3
Manes.16G102700 Manihot esculenta HOM05D004528 ORTHO05D005815 3.9e-195 684.9 413 84.5
CSS0033534 Camellia sinensis var. sinensis HOM05D004528 ORTHO05D005815 6.7e-195 684.1 413 84.0
Dinv36760 Davidia involucrata HOM05D004528 ORTHO05D005815 6.7e-195 684.1 413 84.3
unitig_748.g7306 Utricularia gibba HOM05D004528 ORTHO05D005815 8.7e-195 683.7 430 80.5
ECA240G0155 Erigeron canadensis HOM05D004528 ORTHO05D005815 4.3e-194 681.4 415 82.4
Hma1.2p1_0800F.1_g220090 Hydrangea macrophylla HOM05D004528 ORTHO05D005815 9.6e-194 680.2 410 83.9
Nitab4.5_0011030g0010 Nicotiana tabacum HOM05D004528 ORTHO05D005815 2.1e-193 679.1 413 83.3
Solyc07g039210.4 Solanum lycopersicum HOM05D004528 ORTHO05D005815 2.8e-193 678.7 414 82.6
Duzib150G1454 Durio zibethinus HOM05D004528 ORTHO05D005815 3.7e-193 678.3 409 84.8
PGSC0003DMG400013151 Solanum tuberosum HOM05D004528 ORTHO05D005815 3.7e-193 678.3 414 83.1
vmacro17227 Vaccinium macrocarpon HOM05D004528 ORTHO05D005815 4.8e-193 677.9 444 78.6
Gorai.010G082500 Gossypium raimondii HOM05D004528 ORTHO05D005815 6.3e-193 677.6 413 83.8
Sopen07g017560 Solanum pennellii HOM05D004528 ORTHO05D005815 1.4e-192 676.4 414 82.4
Thecc.09G090300 Theobroma cacao HOM05D004528 ORTHO05D005815 2.4e-192 675.6 413 84.0
Potri.006G221700 Populus trichocarpa HOM05D004528 ORTHO05D005815 4.1e-192 674.9 413 83.3
Nitab4.5_0005634g0070 Nicotiana tabacum HOM05D004528 ORTHO05D005815 4.5e-191 671.4 419 82.1
QL02p062827 Quercus lobata HOM05D004528 ORTHO05D005815 4.5e-191 671.4 416 82.9
CiPaw.03G217000 Carya illinoinensis HOM05D004528 ORTHO05D005815 7.6e-191 670.6 415 83.9
COL.COLO4_18209 Corchorus olitorius HOM05D004528 ORTHO05D005815 7.6e-191 670.6 413 82.8
Ciclev10008462m.g Citrus clementina HOM05D004528 ORTHO05D005815 1.3e-190 669.8 413 83.1
CAN.G1208.1 Capsicum annuum HOM05D004528 ORTHO05D005815 3.8e-190 668.3 411 82.0
TWI34G0432 Tripterygium wilfordii HOM05D004528 ORTHO05D005815 5.0e-190 667.9 413 81.8
RcHm_v2.0_Chr2g0093221 Rosa chinensis HOM05D004528 ORTHO05D005815 8.4e-190 667.2 413 81.8
VMungo1215G0680 Vigna mungo HOM05D004528 ORTHO05D005815 4.2e-189 664.8 413 81.8
Prupe.7G211100 Prunus persica HOM05D004528 ORTHO05D005815 9.3e-189 663.7 413 81.8
Eucgr.C00900 Eucalyptus grandis HOM05D004528 ORTHO05D005815 1.2e-188 663.3 415 81.0
Haze_25904 Corylus avellana HOM05D004528 ORTHO05D005815 3.5e-188 661.8 411 83.2
arahy.Tifrunner.gnm1.ann1.PT0GJ5 Arachis hypogaea HOM05D004528 ORTHO05D005815 4.6e-188 661.4 413 81.1
MD15G1206300 Malus domestica HOM05D004528 ORTHO05D005815 4.6e-188 661.4 413 82.1
DCAR_011978 Daucus carota HOM05D004528 ORTHO05D005815 6.1e-188 661.0 415 81.7
arahy.Tifrunner.gnm1.ann1.A138U3 Arachis hypogaea HOM05D004528 ORTHO05D005815 7.9e-188 660.6 413 81.1
THA.LOC104820025 Tarenaya hassleriana HOM05D004528 ORTHO05D005815 7.9e-188 660.6 413 80.9
MD02G1077700 Malus domestica HOM05D004528 ORTHO05D005815 1.3e-187 659.8 413 81.8
Lsat_1_v5_gn_7_37341 Lactuca sativa HOM05D004528 ORTHO05D005815 1.8e-187 659.4 415 79.8
Carub.0003s3385 Capsella rubella HOM05D004528 ORTHO05D005815 2.3e-187 659.1 413 80.9
CANSAT56G0596 Cannabis sativa HOM05D004528 ORTHO05D005815 3.9e-187 658.3 413 81.1
CANSAT56G1313 Cannabis sativa HOM05D004528 ORTHO05D005815 3.9e-187 658.3 413 81.1
BolC7t40641H Brassica oleracea HOM05D004528 ORTHO05D005815 1.1e-186 656.8 413 80.4
CsaV3_2G001490 Cucumis sativus L. HOM05D004528 ORTHO05D005815 1.1e-186 656.8 409 81.7
CARHR109990 Cardamine hirsuta HOM05D004528 ORTHO05D005815 1.5e-186 656.4 413 80.4
FAN19G1322 Fragaria x ananassa HOM05D004528 ORTHO05D005815 1.5e-186 656.4 413 80.1
MBI01_g09956_MAGBIO Magnolia biondii HOM05D004528 ORTHO05D005815 1.5e-186 656.4 410 81.0
FvH4_1g07290 Fragaria vesca HOM05D004528 ORTHO05D005815 1.9e-186 656.0 413 79.9
Sed0012435 Sechium edule HOM05D004528 ORTHO05D005815 1.9e-186 656.0 413 81.1
C07p02330 Brassica napus HOM05D004528 ORTHO05D005815 4.3e-186 654.8 413 80.1
A07p01220 Brassica napus HOM05D004528 ORTHO05D005815 5.7e-186 654.4 413 79.7
Phvul.003G137300 Phaseolus vulgaris HOM05D004528 ORTHO05D005815 5.7e-186 654.4 413 80.4
Aqoxy7G01232 Aquilegia oxysepala HOM05D004528 ORTHO05D005815 7.4e-186 654.1 413 79.9
BcaC06g36598 Brassica carinata HOM05D004528 ORTHO05D005815 7.4e-186 654.1 413 79.7
BraA07t27910Z Brassica rapa HOM05D004528 ORTHO05D005815 7.4e-186 654.1 413 79.7
FAN23G0078 Fragaria x ananassa HOM05D004528 ORTHO05D005815 7.4e-186 654.1 413 79.9
AL3G48690 Arabidopsis lyrata HOM05D004528 ORTHO05D005815 9.7e-186 653.7 413 79.9
ClCG11G001780 Citrullus lanatus HOM05D004528 ORTHO05D005815 9.7e-186 653.7 413 80.9
BcaB08g34873 Brassica carinata HOM05D004528 ORTHO05D005815 1.6e-185 652.9 413 79.9
FAN28G2769 Fragaria x ananassa HOM05D004528 ORTHO05D005815 1.6e-185 652.9 413 79.9
TAR626G1836 Trochodendron aralioides HOM05D004528 ORTHO05D005815 2.2e-185 652.5 413 80.1
Peaxi162Scf00709g00003 Petunia axillaris HOM05D004528 ORTHO05D005815 4.8e-185 651.4 420 79.3
Glyma.17G055500 Glycine max HOM05D004528 ORTHO05D005815 6.3e-185 651.0 413 79.7
Thhalv10022707m.g Eutrema salsugineum HOM05D004528 ORTHO05D005815 1.8e-184 649.4 413 79.4
Glyma.13G103500 Glycine max HOM05D004528 ORTHO05D005815 2.4e-184 649.0 411 80.0
Lalb_Chr13g0299741 Lupinus albus HOM05D004528 ORTHO05D005815 2.4e-184 649.0 413 79.9
TPR.G3725 Trifolium pratense HOM05D004528 ORTHO05D005815 1.5e-183 646.4 413 79.9
Psat3g072560 Pisum sativum HOM05D004528 ORTHO05D005815 1.0e-182 643.7 413 79.2
AT2G19560 Arabidopsis thaliana HOM05D004528 ORTHO05D005815 6.5e-182 641.0 413 78.2
C05p19590 Brassica napus HOM05D004528 ORTHO05D005815 8.5e-182 640.6 425 77.4
BolC5t30662H Brassica oleracea HOM05D004528 ORTHO05D005815 8.5e-182 640.6 425 77.4
PGR142G0229 Punica granatum HOM05D004528 ORTHO05D005815 1.1e-181 640.2 412 79.6
BcaC05g26001 Brassica carinata HOM05D004528 ORTHO05D005815 1.4e-181 639.8 425 77.2
Lj4g0008156 Lotus japonicus HOM05D004528 ORTHO05D005815 4.2e-181 638.3 411 78.6
Aa31LG8G16570 Aethionema arabicum HOM05D004528 ORTHO05D005815 5.5e-181 637.9 413 78.0
Actinidia25256 Actinidia chinensis HOM05D004528 ORTHO05D005815 4.6e-180 634.8 409 79.7
Sp3g32930 Schrenkiella parvula HOM05D004528 ORTHO05D005815 2.2e-177 625.9 413 77.5
AUR62033986 Chenopodium quinoa HOM05D004528 ORTHO05D005815 6.3e-177 624.4 411 77.9
Medtr7g091650 Medicago truncatula HOM05D004528 ORTHO05D005815 8.2e-177 624.0 414 77.8
PSO832G3660 Papaver somniferum HOM05D004528 ORTHO05D005815 1.1e-176 623.6 414 76.3
PSO063G0639 Papaver somniferum HOM05D004528 ORTHO05D005815 1.8e-176 622.9 414 76.6
HPP92_010493 Vanilla planifolia HOM05D004528 ORTHO05D005815 9.1e-176 620.5 414 75.8
EL10Ac8g19227 Beta vulgaris HOM05D004528 ORTHO05D005815 5.9e-175 617.8 438 73.7
Nn6g35452 Nelumbo nucifera HOM05D004528 ORTHO05D005815 1.7e-174 616.3 413 76.5
SEGI_06455 Sequoiadendron giganteum HOM05D004528 ORTHO05D005815 3.9e-171 605.1 415 71.1
BcaB04g16932 Brassica carinata HOM05D004528 ORTHO05D005815 4.8e-169 598.2 415 74.7
Gohir.D06G070800 Gossypium hirsutum HOM05D004528 ORTHO05D005815 1.4e-168 596.7 370 82.4
Gohir.A06G072200 Gossypium hirsutum HOM05D004528 ORTHO05D005815 4.1e-168 595.1 374 81.3
Os09g0386400 Oryza sativa ssp. japonica HOM05D004528 ORTHO05D005815 8.0e-164 580.9 412 71.1
Ca_08460_v3 Cicer arietinum L. HOM05D004528 ORTHO05D005815 3.0e-163 578.9 405 74.8
MELO3C004622.2 Cucumis melo HOM05D004528 ORTHO05D005815 4.1e-160 568.5 413 72.2
Sc18g0002070 Simmondsia chinensis HOM05D004528 ORTHO05D005815 2.2e-158 562.8 370 79.5
SHI24590 Sapria himalayana HOM05D004528 ORTHO05D005815 2.9e-158 562.4 410 72.7
Cpa.g.sc283.9 Carica papaya HOM05D004528 ORTHO05D005815 1.2e-156 557.0 410 71.7
Rhsim05G0022000 Rhododendron simsii HOM05D004528 ORTHO05D005815 3.6e-156 555.4 323 87.3
Mapoly0005s0151 Marchantia polymorpha HOM05D004528 ORTHO05D005815 4.1e-152 542.0 403 67.0
BcaB04g16933 Brassica carinata HOM05D004528 ORTHO05D005815 1.6e-151 540.0 417 68.3
Pp3c17_12810 Physcomitrium patens HOM05D004528 ORTHO05D005815 4.7e-148 528.5 398 67.1
Sabra06G0171200 Salix brachista HOM05D004528 ORTHO05D005815 5.7e-146 521.5 484 62.0
AUR62027494 Chenopodium quinoa HOM05D004528 ORTHO05D005815 9.8e-146 520.8 411 67.9
AagrBONN_evm.TU.Sc2ySwM_344.906 Anthoceros agrestis HOM05D004528 ORTHO05D005815 9.2e-144 514.2 412 62.6
SMO117G0048 Selaginella moellendorffii HOM05D004528 ORTHO05D005815 1.2e-140 503.8 405 60.5
A07p01200 Brassica napus HOM05D004528 ORTHO05D005815 1.2e-132 477.2 303 78.2
FAN26G1375 Fragaria x ananassa HOM05D004528 ORTHO05D005815 4.7e-132 475.3 281 85.8
FAN26G2732 Fragaria x ananassa HOM05D004528 ORTHO05D005815 4.7e-132 475.3 281 85.8
Atru.chr7.1579 Acer truncatum HOM05D004528 ORTHO05D005815 2.6e-130 469.5 295 80.7
Hma1.2p1_0800F.1_g220100 Hydrangea macrophylla HOM05D004528 ORTHO05D005815 9.2e-128 461.1 256 90.2
CDE02G2136 Ceratophyllum demersum HOM05D004528 ORTHO05D005815 1.8e-115 420.2 314 69.4
Zm00001eb311810 Zea mays HOM05D004528 ORTHO05D005815 6.8e-115 418.3 256 80.9
HPP92_010492 Vanilla planifolia HOM05D004528 ORTHO05D005815 1.3e-113 414.1 284 73.2
BcaB03g16691 Brassica carinata HOM05D004528 ORTHO05D005815 2.9e-105 386.3 313 65.5
BcaB03g16744 Brassica carinata HOM05D004528 ORTHO05D005815 6.2e-100 368.6 292 69.9
CBR_g78884 Chara braunii HOM05D004528 ORTHO05D005815 9.9e-98 361.3 402 48.5
BcaB03g16690 Brassica carinata HOM05D004528 ORTHO05D005815 4.9e-97 359.0 284 65.8
Oeu018237.1 Olea europaea HOM05D004528 ORTHO05D005815 4.3e-85 319.3 200 82.0
Ca_30052_v3 Cicer arietinum L. HOM05D004528 ORTHO05D005815 9.0e-83 311.6 191 83.2
CARHR052830 Cardamine hirsuta HOM05D004528 ORTHO05D005815 5.7e-77 292.4 238 63.0
HanXRQChr09g0238111 Helianthus annuus HOM05D004528 ORTHO05D005815 3.1e-75 286.6 186 75.3
PGSC0003DMG400022053 Solanum tuberosum HOM05D004528 ORTHO05D005815 1.4e-72 277.7 173 80.9
CARHR051760 Cardamine hirsuta HOM05D004528 ORTHO05D005815 3.3e-69 266.5 199 66.8
CARHR054270 Cardamine hirsuta HOM05D004528 ORTHO05D005815 2.3e-62 243.8 204 64.7
MCO16G315 Micromonas commoda HOM05D004528 ORTHO05D005815 2.3e-62 243.8 399 38.1
ATR0026G021 Amborella trichopoda HOM05D004528 ORTHO05D005815 3.4e-58 229.9 141 81.6
Cre02.g110400 Chlamydomonas reinhardtii HOM05D004528 ORTHO05D005815 1.1e-56 224.9 400 34.2
PRCOL_00001383 Prasinoderma coloniale HOM05D004528 ORTHO05D005815 3.6e-55 219.9 318 37.1
MD15G1352000 Malus domestica HOM05D004528 ORTHO05D005815 2.3e-54 217.2 219 55.7
arahy.Tifrunner.gnm1.ann1.43843R Arachis hypogaea HOM05D004528 ORTHO05D005815 5.5e-48 196.1 121 77.7
CARHR122310 Cardamine hirsuta HOM05D004528 ORTHO05D005815 3.6e-47 193.4 126 75.4
CARHR052790 Cardamine hirsuta HOM05D004528 ORTHO05D005815 1.8e-46 191.0 198 57.6
CARHR051750 Cardamine hirsuta HOM05D004528 ORTHO05D005815 9.1e-43 178.7 160 62.5
arahy.Tifrunner.gnm1.ann1.VVLB7Q Arachis hypogaea HOM05D004528 ORTHO05D005815 2.5e-40 170.6 102 81.4
CARHR122320 Cardamine hirsuta HOM05D004528 ORTHO05D005815 7.2e-40 169.1 176 56.2
Ah.14g085220 Amaranthus hybridus HOM05D004528 ORTHO05D005815 2.8e-36 157.1 413 31.0
Sp2g03965 Schrenkiella parvula HOM05D004528 ORTHO05D005815 1.8e-35 154.5 113 66.4
arahy.Tifrunner.gnm1.ann1.DFU5EN Arachis hypogaea HOM05D004528 ORTHO05D005815 6.5e-33 146.0 83 85.5
ATR0026G010 Amborella trichopoda HOM05D004528 ORTHO05D005815 4.2e-32 143.3 80 83.8
ATR0026G011 Amborella trichopoda HOM05D004528 ORTHO05D005815 8.0e-31 139.0 107 61.7
RcHm_v2.0_Chr7g0206721 Rosa chinensis HOM05D004528 ORTHO05D005815 9.2e-27 125.6 115 62.6
RcHm_v2.0_Chr7g0207111 Rosa chinensis HOM05D004528 ORTHO05D005815 1.2e-18 98.6 99 58.6
FAN23G1719 Fragaria x ananassa HOM05D004528 ORTHO05D005815 2.7e-18 97.4 51 92.2
Sopen12g027230 Solanum pennellii HOM05D004528 ORTHO05D051045 4.3e-16 90.1 153 39.9
BcaC03g15601 Brassica carinata HOM05D004528 ORTHO05D032255 2.8e-15 87.4 114 50.9
BolC2t09319H Brassica oleracea HOM05D004528 ORTHO05D032255 6.2e-15 86.3 143 42.7
RcHm_v2.0_Chr7g0207281 Rosa chinensis HOM05D004528 ORTHO05D005815 2.6e-13 80.9 59 76.3
CARHR054260 Cardamine hirsuta HOM05D004528 ORTHO05D005815 4.4e-13 80.1 50 78.0
C02p33900 Brassica napus HOM05D004528 ORTHO05D032255 5.8e-13 79.7 146 41.1
RcHm_v2.0_Chr7g0230831 Rosa chinensis HOM05D004528 ORTHO05D005815 1.7e-09 68.2 40 85.0
arahy.Tifrunner.gnm1.ann1.1S90RN Arachis hypogaea HOM05D004528 ORTHO05D005815 2.3e-09 67.8 55 67.3
CARHR054280 Cardamine hirsuta HOM05D004528 ORTHO05D005815 1.5e-08 65.1 71 53.5
arahy.Tifrunner.gnm1.ann1.UXE40S Arachis hypogaea HOM05D004528 ORTHO05D005815 1.2e-07 62.0 101 41.6


User provided reference genes

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