Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold62G21589 Striga asiatica HOM05D004448 ORTHO05D005919 5.0e-96 354.4 170 100.0
SalBow6G4094 Salvia bowleyana HOM05D004448 ORTHO05D005919 1.4e-61 240.0 163 69.9
Migut.J00591 Erythranthe guttata HOM05D004448 ORTHO05D005919 8.8e-61 237.3 164 70.7
unitig_0.g218 Utricularia gibba HOM05D004448 ORTHO05D005919 2.6e-52 209.1 164 61.0
Cc06_g11170 Coffea canephora HOM05D004448 ORTHO05D005919 1.0e-48 197.2 161 58.4
Nitab4.5_0000938g0020 Nicotiana tabacum HOM05D004448 ORTHO05D005919 1.2e-46 190.3 147 61.2
Nitab4.5_0004087g0010 Nicotiana tabacum HOM05D004448 ORTHO05D005919 1.2e-46 190.3 146 60.3
Sopen07g011050 Solanum pennellii HOM05D004448 ORTHO05D005919 6.2e-46 188.0 154 57.8
PGSC0003DMG400033614 Solanum tuberosum HOM05D004448 ORTHO05D005919 6.2e-46 188.0 145 60.0
Solyc07g021550.3 Solanum lycopersicum HOM05D004448 ORTHO05D005919 8.0e-46 187.6 154 57.8
Nitab4.5_0000713g0030 Nicotiana tabacum HOM05D004448 ORTHO05D005919 1.0e-45 187.2 146 59.6
Oeu024590.1 Olea europaea HOM05D004448 ORTHO05D005919 6.8e-45 184.5 148 60.8
Lsat_1_v5_gn_5_145680 Lactuca sativa HOM05D004448 ORTHO05D005919 2.9e-43 179.1 156 59.0
CSS0023607 Camellia sinensis var. sinensis HOM05D004448 ORTHO05D005919 1.1e-42 177.2 145 57.9
Rhsim05G0022900 Rhododendron simsii HOM05D004448 ORTHO05D005919 3.2e-42 175.6 144 56.2
MD02G1076000 Malus domestica HOM05D004448 ORTHO05D005919 4.1e-42 175.3 157 58.0
Dinv42301 Davidia involucrata HOM05D004448 ORTHO05D005919 3.5e-41 172.2 145 56.6
Actinidia25266 Actinidia chinensis HOM05D004448 ORTHO05D005919 4.6e-41 171.8 145 57.2
HanXRQChr12g0354731 Helianthus annuus HOM05D004448 ORTHO05D005919 1.7e-40 169.9 156 56.4
PSO210G3334 Papaver somniferum HOM05D004448 ORTHO05D005919 2.3e-40 169.5 143 55.9
Haze_25890 Corylus avellana HOM05D004448 ORTHO05D005919 3.9e-40 168.7 144 56.2
Dinv36750 Davidia involucrata HOM05D004448 ORTHO05D005919 1.5e-39 166.8 153 54.2
PSO210G5509 Papaver somniferum HOM05D004448 ORTHO05D005919 2.5e-39 166.0 143 54.5
QL02p063021 Quercus lobata HOM05D004448 ORTHO05D005919 2.5e-39 166.0 155 52.9
ECA234G2909 Erigeron canadensis HOM05D004448 ORTHO05D005919 3.3e-39 165.6 156 53.8
PGR142G4073 Punica granatum HOM05D004448 ORTHO05D005919 3.3e-39 165.6 149 55.7
Peaxi162Scf00175g00047 Petunia axillaris HOM05D004448 ORTHO05D005919 7.3e-39 164.5 154 54.5
Cfa003108 Carpinus fangiana HOM05D004448 ORTHO05D005919 1.6e-38 163.3 144 54.9
Prupe.7G212600 Prunus persica HOM05D004448 ORTHO05D005919 6.2e-38 161.4 149 56.4
Eucgr.C00913 Eucalyptus grandis HOM05D004448 ORTHO05D005919 1.1e-37 160.6 146 54.1
TWI32G1061 Tripterygium wilfordii HOM05D004448 ORTHO05D005919 1.1e-37 160.6 145 53.8
Ah.14g085380 Amaranthus hybridus HOM05D004448 ORTHO05D005919 1.4e-37 160.2 166 51.2
ClCG03G015750 Citrullus lanatus HOM05D004448 ORTHO05D005919 2.3e-37 159.5 145 53.8
Potri.006G150000 Populus trichocarpa HOM05D004448 ORTHO05D005919 1.5e-36 156.8 148 54.7
Aqoxy5G03492 Aquilegia oxysepala HOM05D004448 ORTHO05D005919 2.0e-36 156.4 146 54.8
GSVIVG01015227001 Vitis vinifera HOM05D004448 ORTHO05D005919 2.6e-36 156.0 145 51.7
MBI08_g34934_MAGBIO Magnolia biondii HOM05D004448 ORTHO05D005919 5.8e-36 154.8 159 48.4
Nn8g38906 Nelumbo nucifera HOM05D004448 ORTHO05D005919 7.5e-36 154.5 144 54.2
FvH4_1g07151 Fragaria vesca HOM05D004448 ORTHO05D005919 9.8e-36 154.1 145 55.2
COL.COLO4_18221 Corchorus olitorius HOM05D004448 ORTHO05D005919 1.3e-35 153.7 145 51.7
AUR62027409 Chenopodium quinoa HOM05D004448 ORTHO05D005919 2.2e-35 152.9 145 51.7
DCAR_024685 Daucus carota HOM05D004448 ORTHO05D005919 2.2e-35 152.9 126 55.6
Medtr7g090060 Medicago truncatula HOM05D004448 ORTHO05D005919 2.9e-35 152.5 147 55.1
Sabra06G0118700 Salix brachista HOM05D004448 ORTHO05D005919 1.1e-34 150.6 148 52.0
RcHm_v2.0_Chr2g0093041 Rosa chinensis HOM05D004448 ORTHO05D005919 1.4e-34 150.2 150 52.0
Os07g0586700 Oryza sativa ssp. japonica HOM05D004448 ORTHO05D005919 1.9e-34 149.8 154 49.4
AUR62031324 Chenopodium quinoa HOM05D004448 ORTHO05D005919 2.4e-34 149.4 162 48.1
Thecc.09G092200 Theobroma cacao HOM05D004448 ORTHO05D005919 2.4e-34 149.4 160 50.6
EL10Ac8g19309 Beta vulgaris HOM05D004448 ORTHO05D005919 3.2e-34 149.1 164 48.2
Cpa.g.sc7.238 Carica papaya HOM05D004448 ORTHO05D005919 3.2e-34 149.1 145 49.0
Sp6g18520 Schrenkiella parvula HOM05D004448 ORTHO05D005919 5.4e-34 148.3 147 50.3
HPP92_006937 Vanilla planifolia HOM05D004448 ORTHO05D005919 5.4e-34 148.3 159 45.9
CsaV3_1G040260 Cucumis sativus L. HOM05D004448 ORTHO05D005919 7.1e-34 147.9 145 51.0
CsaV3_UNG066510 Cucumis sativus L. HOM05D004448 ORTHO05D005919 7.1e-34 147.9 145 51.0
CANSAT56G0950 Cannabis sativa HOM05D004448 ORTHO05D005919 9.2e-34 147.5 145 52.4
Gohir.D08G265800 Gossypium hirsutum HOM05D004448 ORTHO05D005919 9.2e-34 147.5 145 54.5
Gohir.D08G266000 Gossypium hirsutum HOM05D004448 ORTHO05D005919 9.2e-34 147.5 145 54.5
Hund06702 Selenicereus undatus HOM05D004448 ORTHO05D005919 9.2e-34 147.5 170 47.6
VMungo0464G0625 Vigna mungo HOM05D005189 ORTHO05D006093 9.2e-34 147.5 147 53.7
Duzib168G0645 Durio zibethinus HOM05D004448 ORTHO05D005919 1.6e-33 146.7 160 50.0
Gohir.A08G245000 Gossypium hirsutum HOM05D004448 ORTHO05D005919 1.6e-33 146.7 145 54.5
BcaB08g36059 Brassica carinata HOM05D004448 ORTHO05D005919 6.0e-33 144.8 144 50.7
Ca_08398_v3 Cicer arietinum L. HOM05D004448 ORTHO05D005919 6.0e-33 144.8 149 53.7
vmacro17218 Vaccinium macrocarpon HOM05D004448 ORTHO05D005919 6.0e-33 144.8 138 50.7
vmacro22686 Vaccinium macrocarpon HOM05D004448 ORTHO05D005919 6.0e-33 144.8 138 50.7
AT5G56780 Arabidopsis thaliana HOM05D004448 ORTHO05D005919 7.8e-33 144.4 146 51.4
Thhalv10015325m.g Eutrema salsugineum HOM05D004448 ORTHO05D005919 1.3e-32 143.7 148 51.4
Manes.03G032000 Manihot esculenta HOM05D004448 ORTHO05D005919 1.3e-32 143.7 152 49.3
BcaC04g20054 Brassica carinata HOM05D004448 ORTHO05D005919 1.7e-32 143.3 147 49.7
C09p48340 Brassica napus HOM05D004448 ORTHO05D005919 1.7e-32 143.3 147 49.7
BolC9t57684H Brassica oleracea HOM05D004448 ORTHO05D005919 1.7e-32 143.3 147 49.7
FAN26G2794 Fragaria x ananassa HOM05D004448 ORTHO05D005919 1.7e-32 143.3 145 53.8
BcaC02g12506 Brassica carinata HOM05D004448 ORTHO05D005919 2.3e-32 142.9 143 49.7
ATR0705G152 Amborella trichopoda HOM05D004448 ORTHO05D005919 3.9e-32 142.1 158 48.1
Medtr6g092520 Medicago truncatula HOM05D004448 ORTHO05D005919 3.9e-32 142.1 144 54.2
FAN26G0987 Fragaria x ananassa HOM05D004448 ORTHO05D005919 5.1e-32 141.7 145 53.1
TPR.G35500 Trifolium pratense HOM05D004448 ORTHO05D005919 5.1e-32 141.7 153 51.6
Psat1g049640 Pisum sativum HOM05D004448 ORTHO05D005919 6.6e-32 141.4 145 53.8
A10p14110 Brassica napus HOM05D004448 ORTHO05D005919 1.1e-31 140.6 147 49.0
BraA10t43502Z Brassica rapa HOM05D004448 ORTHO05D005919 1.1e-31 140.6 147 49.0
Lj2g0008301 Lotus japonicus HOM05D004448 ORTHO05D005919 1.1e-31 140.6 148 52.7
RhsimUnG0189000 Rhododendron simsii HOM05D004448 ORTHO05D005919 1.1e-31 140.6 125 53.6
Sc18g0001910 Simmondsia chinensis HOM05D004448 ORTHO05D005919 1.1e-31 140.6 154 47.4
Aa31LG3G12720 Aethionema arabicum HOM05D004448 ORTHO05D005919 1.5e-31 140.2 145 51.0
A05p01610 Brassica napus HOM05D004448 ORTHO05D005919 1.9e-31 139.8 143 49.0
BraA05t19157Z Brassica rapa HOM05D004448 ORTHO05D005919 1.9e-31 139.8 143 49.0
Rhsim03G0233900 Rhododendron simsii HOM05D004448 ORTHO05D005919 1.9e-31 139.8 150 48.7
C04p01820 Brassica napus HOM05D004448 ORTHO05D005919 2.5e-31 139.4 143 49.0
Ciclev10010615m.g Citrus clementina HOM05D004448 ORTHO05D005919 2.5e-31 139.4 144 52.1
Atru.chr7.1561 Acer truncatum HOM05D004448 ORTHO05D005919 3.3e-31 139.0 146 51.4
THA.LOC104813490 Tarenaya hassleriana HOM05D004448 ORTHO05D005919 3.3e-31 139.0 147 49.0
FAN19G1271 Fragaria x ananassa HOM05D004448 ORTHO05D005919 7.3e-31 137.9 146 48.6
FAN23G3053 Fragaria x ananassa HOM05D004448 ORTHO05D005919 7.3e-31 137.9 146 48.6
arahy.Tifrunner.gnm1.ann1.LLR3FQ Arachis hypogaea HOM05D004448 ORTHO05D005919 1.2e-30 137.1 143 51.0
BcaC02g12705 Brassica carinata HOM05D004448 ORTHO05D005919 1.2e-30 137.1 144 47.9
Hma1.2p1_0663F.1_g198910 Hydrangea macrophylla HOM05D004448 ORTHO05D005919 1.2e-30 137.1 125 52.8
Phvul.004G171600 Phaseolus vulgaris HOM05D004448 ORTHO05D005919 1.6e-30 136.7 146 51.4
Carub.0008s1726 Capsella rubella HOM05D004448 ORTHO05D005919 2.1e-30 136.3 147 49.7
Aa31LG2G21230 Aethionema arabicum HOM05D004448 ORTHO05D005919 2.8e-30 136.0 143 50.3
Zm00001eb325970 Zea mays HOM05D004448 ORTHO05D005919 2.8e-30 136.0 143 48.3
arahy.Tifrunner.gnm1.ann1.6Q96ZG Arachis hypogaea HOM05D004448 ORTHO05D005919 6.2e-30 134.8 150 48.7
vmacro06280 Vaccinium macrocarpon HOM05D004448 ORTHO05D005919 6.2e-30 134.8 157 45.9
Lalb_Chr24g0393831 Lupinus albus HOM05D004448 ORTHO05D005919 2.3e-29 132.9 152 49.3
Rhsim03G0233500 Rhododendron simsii HOM05D004448 ORTHO05D005919 1.5e-28 130.2 126 50.0
CiPaw.03G218000 Carya illinoinensis HOM05D004448 ORTHO05D005919 4.4e-28 128.6 125 52.0
Glyma.07G128700 Glycine max HOM05D004448 ORTHO05D005919 4.4e-28 128.6 147 47.6
Ciclev10008074m.g Citrus clementina HOM05D004448 ORTHO05D005919 5.8e-28 128.3 145 46.9
CDE09G0006 Ceratophyllum demersum HOM05D004448 ORTHO05D005919 1.1e-26 124.0 124 51.6
CBR_g29538 Chara braunii HOM05D004448 ORTHO05D005919 1.4e-26 123.6 182 41.2
MELO3C015453.2 Cucumis melo HOM05D004448 ORTHO05D005919 1.9e-26 123.2 125 48.8
AL8G32620 Arabidopsis lyrata HOM05D004448 ORTHO05D005919 2.1e-25 119.8 195 38.5
TPR.G35590 Trifolium pratense HOM05D004448 ORTHO05D005919 2.7e-25 119.4 105 60.0
Pp3c3_34250 Physcomitrium patens HOM05D004448 ORTHO05D005919 4.6e-25 118.6 113 50.4
Mapoly0070s0093 Marchantia polymorpha HOM05D004448 ORTHO05D005919 1.7e-24 116.7 192 37.0
AagrBONN_evm.TU.Sc2ySwM_117.4075 Anthoceros agrestis HOM05D004448 ORTHO05D005919 3.9e-24 115.5 114 54.4
Pp3c4_9790 Physcomitrium patens HOM05D004448 ORTHO05D005919 6.6e-24 114.8 112 50.9
CSS0050052 Camellia sinensis var. sinensis HOM05D004448 ORTHO05D005919 1.9e-23 113.2 151 43.0
Pp3c15_21310 Physcomitrium patens HOM05D004448 ORTHO05D005919 3.3e-23 112.5 108 49.1
RcHm_v2.0_Chr2g0093031 Rosa chinensis HOM05D004448 ORTHO05D005919 1.2e-22 110.5 145 44.1
SalBow1G6253 Salvia bowleyana HOM05D004448 ORTHO05D005919 1.2e-22 110.5 149 42.3
CARHR270530 Cardamine hirsuta HOM05D004448 ORTHO05D005919 6.2e-22 108.2 129 46.5
CARHR270520 Cardamine hirsuta HOM05D004448 ORTHO05D005919 1.4e-21 107.1 147 40.1
Gohir.A08G244900 Gossypium hirsutum HOM05D004448 ORTHO05D005919 1.2e-20 104.0 148 45.3
AT5G56770 Arabidopsis thaliana HOM05D004448 ORTHO05D005919 7.6e-20 101.3 142 38.7
SMO139G0129 Selaginella moellendorffii HOM05D006068 ORTHO05D007579 9.9e-20 100.9 149 43.0
Gohir.A08G245100 Gossypium hirsutum HOM05D004448 ORTHO05D005919 1.3e-19 100.5 143 44.8
AL8G32610 Arabidopsis lyrata HOM05D004448 ORTHO05D005919 6.4e-19 98.2 102 48.0
Pp3c16_1200 Physcomitrium patens HOM05D004448 ORTHO05D005919 1.1e-18 97.4 107 46.7
Pp3c27_3080 Physcomitrium patens HOM05D004448 ORTHO05D005919 1.9e-18 96.7 109 45.9
Atru.chr7.1555 Acer truncatum HOM05D004448 ORTHO05D005919 1.2e-17 94.0 97 47.4
Gorai.N024000 Gossypium raimondii HOM05D004448 ORTHO05D005919 6.0e-17 91.7 144 41.7
Hma1.2p1_0024F.1_g016070 Hydrangea macrophylla HOM05D004448 ORTHO05D005919 1.3e-16 90.5 101 46.5
Medtr6g092500 Medicago truncatula HOM05D004448 ORTHO05D005919 3.0e-16 89.4 111 45.0
Duzib150G0429 Durio zibethinus HOM05D004448 ORTHO05D005919 3.9e-16 89.0 178 34.3
Carub.0008s1725 Capsella rubella HOM05D004448 ORTHO05D005919 1.3e-11 73.9 111 39.6
TPR.G40396 Trifolium pratense HOM05D004448 ORTHO05D005919 3.2e-10 69.3 82 47.6
CBR_g20264 Chara braunii HOM05D000505 ORTHO05D000301 1.6e-09 67.0 138 31.9
SMO157G0009 Selaginella moellendorffii HOM05D006068 ORTHO05D007579 7.9e-09 64.7 110 40.0
Gohir.D08G265900 Gossypium hirsutum HOM05D004448 ORTHO05D005919 6.7e-08 61.6 92 41.3


User provided reference genes

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