Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold58G20457 Striga asiatica HOM05D005339 ORTHO05D006561 1.1e-180 636.7 359 100.0
Migut.B00167 Erythranthe guttata HOM05D005339 ORTHO05D006561 1.2e-155 553.5 359 89.7
unitig_744.g24266 Utricularia gibba HOM05D005339 ORTHO05D006561 2.3e-151 539.3 363 85.4
PGSC0003DMG400001633 Solanum tuberosum HOM05D005339 ORTHO05D006561 6.3e-149 531.2 359 84.7
arahy.Tifrunner.gnm1.ann1.RMHT0B Arachis hypogaea HOM05D005339 ORTHO05D006561 1.1e-148 530.4 359 85.0
Cc11_g02780 Coffea canephora HOM05D005339 ORTHO05D006561 2.4e-148 529.3 361 84.5
Ciclev10028803m.g Citrus clementina HOM05D005339 ORTHO05D006561 5.3e-148 528.1 359 79.9
Solyc01g111140.3 Solanum lycopersicum HOM05D005339 ORTHO05D006561 5.3e-148 528.1 359 87.2
Sopen01g053200 Solanum pennellii HOM05D005339 ORTHO05D006561 5.3e-148 528.1 359 87.2
CAN.G588.26 Capsicum annuum HOM05D005339 ORTHO05D006561 6.9e-148 527.7 359 85.8
Actinidia20485 Actinidia chinensis HOM05D005339 ORTHO05D006561 9.0e-148 527.3 359 83.3
Nitab4.5_0000283g0140 Nicotiana tabacum HOM05D005339 ORTHO05D006561 1.2e-147 526.9 359 86.9
Nitab4.5_0000980g0240 Nicotiana tabacum HOM05D005339 ORTHO05D006561 1.2e-147 526.9 359 86.9
Manes.04G078200 Manihot esculenta HOM05D005339 ORTHO05D006561 2.0e-147 526.2 359 83.6
Glyma.08G042200 Glycine max HOM05D005339 ORTHO05D006561 7.7e-147 524.2 359 83.3
Thecc.02G066900 Theobroma cacao HOM05D005339 ORTHO05D006561 1.0e-146 523.9 359 83.6
ClCG02G011380 Citrullus lanatus HOM05D005339 ORTHO05D006561 1.3e-146 523.5 359 83.0
CsaV3_2G015710 Cucumis sativus L. HOM05D005339 ORTHO05D006561 1.3e-146 523.5 359 83.0
Gohir.A03G203200 Gossypium hirsutum HOM05D005339 ORTHO05D006561 1.7e-146 523.1 359 82.7
Gorai.005G252300 Gossypium raimondii HOM05D005339 ORTHO05D006561 1.7e-146 523.1 359 82.7
Peaxi162Scf00362g01036 Petunia axillaris HOM05D005339 ORTHO05D006561 2.9e-146 522.3 359 85.2
CSS0049457 Camellia sinensis var. sinensis HOM05D005339 ORTHO05D006561 3.8e-146 521.9 359 81.9
Gohir.D02G224500 Gossypium hirsutum HOM05D005339 ORTHO05D006561 3.8e-146 521.9 361 82.3
PGR142G1539 Punica granatum HOM05D005339 ORTHO05D006561 6.5e-146 521.2 361 81.4
GSVIVG01024083001 Vitis vinifera HOM05D005339 ORTHO05D006561 6.5e-146 521.2 359 83.0
Rhsim11G0187800 Rhododendron simsii HOM05D005339 ORTHO05D006561 8.5e-146 520.8 359 81.9
Lalb_Chr11g0072011 Lupinus albus HOM05D005339 ORTHO05D006561 1.1e-145 520.4 359 83.3
arahy.Tifrunner.gnm1.ann1.UV505Z Arachis hypogaea HOM05D005339 ORTHO05D006561 1.4e-145 520.0 375 81.3
Glyma.05G234700 Glycine max HOM05D005339 ORTHO05D006561 2.5e-145 519.2 359 82.7
Hund06405 Selenicereus undatus HOM05D005339 ORTHO05D006561 3.2e-145 518.8 359 82.5
Prupe.7G010600 Prunus persica HOM05D005339 ORTHO05D006561 5.5e-145 518.1 359 82.7
vmacro02249 Vaccinium macrocarpon HOM05D005339 ORTHO05D006561 5.5e-145 518.1 359 85.0
THA.LOC104807785 Tarenaya hassleriana HOM05D005339 ORTHO05D006561 7.2e-145 517.7 359 82.2
Cfa005184 Carpinus fangiana HOM05D005339 ORTHO05D006561 9.4e-145 517.3 359 80.8
SalBow6G1349 Salvia bowleyana HOM05D005339 ORTHO05D006561 9.4e-145 517.3 359 85.0
DCAR_022955 Daucus carota HOM05D005339 ORTHO05D006561 1.6e-144 516.5 363 81.8
DCAR_022956 Daucus carota HOM05D005339 ORTHO05D006561 1.6e-144 516.5 363 81.8
Psat7g008680 Pisum sativum HOM05D005339 ORTHO05D006561 4.6e-144 515.0 362 82.3
Hma1.2p1_0032F.1_g019680 Hydrangea macrophylla HOM05D005339 ORTHO05D006561 6.1e-144 514.6 359 81.9
CDE04G0258 Ceratophyllum demersum HOM05D005339 ORTHO05D006561 7.9e-144 514.2 359 81.1
Aqoxy5G01796 Aquilegia oxysepala HOM05D005339 ORTHO05D006561 1.0e-143 513.8 359 81.3
Eucgr.I01375 Eucalyptus grandis HOM05D005339 ORTHO05D006561 1.0e-143 513.8 359 81.6
CANSAT25G3263 Cannabis sativa HOM05D005339 ORTHO05D006561 1.8e-143 513.1 359 81.9
RcHm_v2.0_Chr2g0122771 Rosa chinensis HOM05D005339 ORTHO05D006561 2.3e-143 512.7 359 81.9
ATR0810G182 Amborella trichopoda HOM05D005339 ORTHO05D006561 6.7e-143 511.1 359 81.3
Medtr8g105120 Medicago truncatula HOM05D005339 ORTHO05D006561 6.7e-143 511.1 360 81.9
Sed0019675 Sechium edule HOM05D005339 ORTHO05D006561 1.1e-142 510.4 359 80.5
Duzib132G0613 Durio zibethinus HOM05D005339 ORTHO05D006561 1.5e-142 510.0 369 80.2
QL11p047539 Quercus lobata HOM05D005339 ORTHO05D006561 1.5e-142 510.0 360 82.2
QL11p047573 Quercus lobata HOM05D005339 ORTHO05D006561 1.5e-142 510.0 360 82.2
VMungo0251G0038 Vigna mungo HOM05D005339 ORTHO05D006561 2.0e-142 509.6 363 82.4
Phvul.002G320300 Phaseolus vulgaris HOM05D005339 ORTHO05D006561 2.5e-142 509.2 363 82.1
CDE02G2588 Ceratophyllum demersum HOM05D005339 ORTHO05D006561 3.3e-142 508.8 359 74.9
Potri.009G129700 Populus trichocarpa HOM05D005339 ORTHO05D006561 3.3e-142 508.8 360 81.7
Potri.004G168400 Populus trichocarpa HOM05D005339 ORTHO05D006561 9.7e-142 507.3 359 80.8
HanXRQChr15g0478851 Helianthus annuus HOM05D005339 ORTHO05D006561 1.3e-141 506.9 359 82.7
Zm00001eb103630 Zea mays HOM05D005339 ORTHO05D006561 1.3e-141 506.9 359 80.8
Sabra04G0112800 Salix brachista HOM05D005339 ORTHO05D006561 2.8e-141 505.8 359 80.5
TWI31G0803 Tripterygium wilfordii HOM05D005339 ORTHO05D006561 3.7e-141 505.4 359 82.2
PSO700G0269 Papaver somniferum HOM05D005339 ORTHO05D006561 6.3e-141 504.6 360 80.8
Atru.chr5.3227 Acer truncatum HOM05D005339 ORTHO05D006561 8.2e-141 504.2 359 81.9
CiPaw.05G077200 Carya illinoinensis HOM05D005339 ORTHO05D006561 1.4e-140 503.4 359 79.7
Os09g0535300 Oryza sativa ssp. japonica HOM05D005339 ORTHO05D006561 3.1e-140 502.3 359 80.8
PSO170G1371 Papaver somniferum HOM05D005339 ORTHO05D006561 3.1e-140 502.3 360 80.6
Thhalv10000232m.g Eutrema salsugineum HOM05D005339 ORTHO05D006561 4.1e-140 501.9 360 80.0
FvH4_1g25110 Fragaria vesca HOM05D005339 ORTHO05D006561 9.1e-140 500.7 359 82.5
MD14G1006100 Malus domestica HOM05D005339 ORTHO05D006561 1.2e-139 500.4 359 80.5
Oeu055639.3 Olea europaea HOM05D005339 ORTHO05D006561 7.7e-139 497.7 360 83.9
Sp4g00300 Schrenkiella parvula HOM05D005339 ORTHO05D006561 1.3e-138 496.9 360 79.2
Carub.0004s0017 Capsella rubella HOM05D005339 ORTHO05D006561 3.8e-138 495.4 360 77.2
MBI19_g09243_MAGBIO Magnolia biondii HOM05D005339 ORTHO05D006561 5.0e-138 495.0 385 75.6
AL4G10240 Arabidopsis lyrata HOM05D005339 ORTHO05D006561 6.5e-138 494.6 360 76.9
AUR62010093 Chenopodium quinoa HOM05D005339 ORTHO05D006561 6.5e-138 494.6 359 78.3
AT2G21150 Arabidopsis thaliana HOM05D005339 ORTHO05D006561 8.5e-138 494.2 360 77.2
BcaB08g34965 Brassica carinata HOM05D005339 ORTHO05D006561 8.5e-138 494.2 360 78.3
LjContig00310g0009118 Lotus japonicus HOM05D005339 ORTHO05D006561 7.2e-137 491.1 359 81.1
CiPaw.06G125300 Carya illinoinensis HOM05D005339 ORTHO05D006561 1.2e-136 490.3 359 78.6
ECA246G3996 Erigeron canadensis HOM05D005339 ORTHO05D006561 1.6e-136 490.0 354 80.8
A09p58500 Brassica napus HOM05D005339 ORTHO05D006561 2.1e-136 489.6 367 78.2
MD12G1008800 Malus domestica HOM05D005339 ORTHO05D006561 2.1e-136 489.6 359 78.8
Dinv41975 Davidia involucrata HOM05D005339 ORTHO05D006561 3.6e-136 488.8 359 82.2
Pp3c17_13560 Physcomitrium patens HOM05D005339 ORTHO05D006561 6.1e-136 488.0 360 75.0
C08p41800 Brassica napus HOM05D005339 ORTHO05D006561 5.1e-135 485.0 369 78.0
C04p50370 Brassica napus HOM05D005339 ORTHO05D006561 6.7e-135 484.6 360 77.8
BolC4t26635H Brassica oleracea HOM05D005339 ORTHO05D006561 6.7e-135 484.6 360 77.8
Mapoly0015s0022 Marchantia polymorpha HOM05D005339 ORTHO05D006561 6.7e-135 484.6 359 73.3
Nn7g36850 Nelumbo nucifera HOM05D005339 ORTHO05D006561 2.6e-134 482.6 343 80.2
Sabra09G0099200 Salix brachista HOM05D005339 ORTHO05D006561 2.6e-134 482.6 392 73.5
BolC8t51743H Brassica oleracea HOM05D005339 ORTHO05D006561 3.3e-134 482.3 369 78.3
AagrBONN_evm.TU.Sc2ySwM_344.4430 Anthoceros agrestis HOM05D005339 ORTHO05D006561 6.3e-133 478.0 359 76.3
BcaC07g41172 Brassica carinata HOM05D005339 ORTHO05D006561 6.3e-133 478.0 353 79.9
SMO117G0089 Selaginella moellendorffii HOM05D005339 ORTHO05D006561 8.2e-133 477.6 359 76.6
Lj4g0026543 Lotus japonicus HOM05D005339 ORTHO05D006561 1.4e-132 476.9 344 81.4
Aa31LG7G15530 Aethionema arabicum HOM05D005339 ORTHO05D006561 1.8e-132 476.5 352 78.7
Lj9C389T6 Lonicera japonica HOM05D005339 ORTHO05D006561 1.8e-132 476.5 397 71.5
Ah.01g009160 Amaranthus hybridus HOM05D005339 ORTHO05D006561 4.1e-132 475.3 359 77.7
Lalb_Chr23g0275171 Lupinus albus HOM05D005339 ORTHO05D006561 7.0e-132 474.6 343 80.8
Ca_17265_v3 Cicer arietinum L. HOM05D005339 ORTHO05D006561 1.3e-130 470.3 345 80.6
Ca_17286_v3 Cicer arietinum L. HOM05D005339 ORTHO05D006561 1.3e-130 470.3 345 80.6
BraA09t41237Z Brassica rapa HOM05D005339 ORTHO05D006561 1.7e-130 469.9 389 73.3
FAN23G1071 Fragaria x ananassa HOM05D005339 ORTHO05D006561 2.3e-127 459.5 359 76.3
TAR376G0223 Trochodendron aralioides HOM05D005339 ORTHO05D006561 3.1e-124 449.1 327 81.3
FAN28G0542 Fragaria x ananassa HOM05D005339 ORTHO05D006561 5.3e-124 448.4 387 71.1
FAN28G2786 Fragaria x ananassa HOM05D005339 ORTHO05D006561 5.3e-124 448.4 387 71.1
AUR62013089 Chenopodium quinoa HOM05D005339 ORTHO05D006561 3.5e-123 445.7 359 74.1
Haze_02197 Corylus avellana HOM05D005339 ORTHO05D006561 3.5e-123 445.7 359 66.9
A04p15920 Brassica napus HOM05D005339 ORTHO05D006561 9.4e-121 437.6 360 73.3
EL10Ac9g21438 Beta vulgaris HOM05D005339 ORTHO05D006561 1.7e-114 416.8 374 68.7
TPR.G17076 Trifolium pratense HOM05D005339 ORTHO05D006561 2.2e-114 416.4 305 79.7
Lsat_1_v5_gn_3_45301 Lactuca sativa HOM05D005339 ORTHO05D006561 2.7e-112 409.5 357 72.5
BraA04t17225Z Brassica rapa HOM05D005339 ORTHO05D006561 1.4e-111 407.1 536 52.2
Manes.11G090000 Manihot esculenta HOM05D005339 ORTHO05D006561 1.1e-105 387.5 296 79.7
FAN19G3054 Fragaria x ananassa HOM05D005339 ORTHO05D006561 1.5e-105 387.1 359 70.5
Sc08g0003210 Simmondsia chinensis HOM05D005339 ORTHO05D006561 9.5e-105 384.4 246 79.7
COL.COLO4_17257 Corchorus olitorius HOM05D005339 ORTHO05D003646 1.0e-98 364.4 342 67.3
Cpa.g.sc37.191 Carica papaya HOM05D005339 ORTHO05D006561 1.2e-94 350.9 341 66.6
FAN26G3137 Fragaria x ananassa HOM05D005339 ORTHO05D006561 7.5e-94 348.2 359 65.2
MELO3C020783.2 Cucumis melo HOM05D005339 ORTHO05D006561 1.3e-93 347.4 277 78.0
Pp3c2_11550 Physcomitrium patens HOM05D005339 ORTHO05D006561 4.9e-93 345.5 297 68.7
HPP92_028582 Vanilla planifolia HOM05D005339 ORTHO05D006561 4.6e-91 339.0 359 61.0
Cre07.g341300 Chlamydomonas reinhardtii HOM05D005339 ORTHO05D006561 2.8e-88 329.7 402 47.5
VMungo0251G1189 Vigna mungo HOM05D005339 ORTHO05D006561 8.6e-82 308.1 165 90.3
MCO15G465 Micromonas commoda HOM05D005339 ORTHO05D006561 2.8e-80 303.1 352 50.3
QL11p047601 Quercus lobata HOM05D005339 ORTHO05D006561 6.9e-63 245.4 198 65.2
SEGI_00782 Sequoiadendron giganteum HOM05D005339 ORTHO05D006561 2.4e-60 236.9 233 70.4
PRCOL_00006995 Prasinoderma coloniale HOM05D005339 ORTHO05D006561 2.3e-58 230.3 346 44.5
CBR_g47091 Chara braunii HOM05D005339 ORTHO05D006561 4.9e-53 212.6 116 85.3
CSS0019608 Camellia sinensis var. sinensis HOM05D005339 ORTHO05D006561 2.7e-43 180.3 82 100.0
CARHR112000 Cardamine hirsuta HOM05D005339 ORTHO05D006561 1.1e-41 174.9 168 64.9
CSS0027179 Camellia sinensis var. sinensis HOM05D005339 ORTHO05D006561 1.5e-41 174.5 107 79.4
Actinidia00595 Actinidia chinensis HOM05D005339 ORTHO05D006561 2.5e-36 157.1 89 92.1
VMungo0251G1261 Vigna mungo HOM05D005339 ORTHO05D006561 7.1e-36 155.6 89 92.1
TPR.G35331 Trifolium pratense HOM05D005339 ORTHO05D006561 6.9e-23 112.5 55 96.4
Phvul.002G320400 Phaseolus vulgaris HOM05D005339 ORTHO05D006561 2.2e-21 107.5 64 89.1
Cfa025584 Carpinus fangiana HOM05D005339 ORTHO05D006561 1.1e-17 95.1 276 29.3
MCO03G074 Micromonas commoda HOM05D005339 ORTHO05D006561 8.2e-16 89.0 223 26.9
SMO274G0062 Selaginella moellendorffii HOM05D005339 ORTHO05D006561 1.2e-14 85.1 64 65.6
RcHm_v2.0_Chr5g0045021 Rosa chinensis HOM05D005339 ORTHO05D006561 5.0e-13 79.7 39 92.3
SMO301G0014 Selaginella moellendorffii HOM05D005339 ORTHO05D006561 9.4e-12 75.5 54 68.5
TPR.G17724 Trifolium pratense HOM05D005339 ORTHO05D006561 9.4e-12 75.5 41 90.2
CSS0035622 Camellia sinensis var. sinensis HOM05D005339 ORTHO05D006561 1.0e-10 72.0 77 77.9
Actinidia00596 Actinidia chinensis HOM05D003396 ORTHO05D003646 3.0e-10 70.5 45 75.6
Migut.O00339 Erythranthe guttata HOM05D005339 ORTHO05D006561 3.9e-10 70.1 30 96.7


User provided reference genes

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