Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold55G19785 Striga asiatica HOM05D005275 ORTHO05D006435 1.3e-123 446.4 227 100.0
MSTRG.48 Avicennia marina HOM05D005275 ORTHO05D006435 1.6e-73 280.0 175 81.7
Migut.F01020 Erythranthe guttata HOM05D005275 ORTHO05D006435 5.1e-72 275.0 175 81.1
Oeu060995.2 Olea europaea HOM05D005275 ORTHO05D006435 6.9e-61 238.0 187 70.1
Hma1.2p1_1507F.1_g287690 Hydrangea macrophylla HOM05D005275 ORTHO05D006435 5.9e-60 235.0 178 69.7
HanXRQChr16g0505961 Helianthus annuus HOM05D005275 ORTHO05D006435 8.5e-59 231.1 182 67.0
Lsat_1_v5_gn_7_91160 Lactuca sativa HOM05D005275 ORTHO05D006435 7.2e-58 228.0 189 64.6
HanXRQChr04g0128021 Helianthus annuus HOM05D005275 ORTHO05D006435 1.6e-57 226.9 182 67.0
CSS0019342 Camellia sinensis var. sinensis HOM05D005275 ORTHO05D006435 6.1e-57 224.9 189 64.0
ECA236G4645 Erigeron canadensis HOM05D005275 ORTHO05D006435 6.1e-57 224.9 185 65.4
Lj8A623T20 Lonicera japonica HOM05D005275 ORTHO05D006435 6.1e-57 224.9 189 64.6
Hund20626 Selenicereus undatus HOM05D005275 ORTHO05D006435 1.4e-56 223.8 185 65.4
Actinidia08664 Actinidia chinensis HOM05D005275 ORTHO05D006435 3.0e-56 222.6 160 72.5
unitig_62.g23847 Utricularia gibba HOM05D002066 ORTHO05D001617 1.5e-55 220.3 147 77.6
Cc01_g04130 Coffea canephora HOM05D005275 ORTHO05D006435 2.5e-55 219.5 179 67.6
DCAR_008951 Daucus carota HOM05D005275 ORTHO05D006435 4.8e-54 215.3 178 66.3
EL10Ac3g05547 Beta vulgaris HOM05D005275 ORTHO05D006435 8.2e-54 214.5 185 63.2
Duzib114G0832 Durio zibethinus HOM05D005275 ORTHO05D006435 8.2e-54 214.5 194 61.3
GSVIVG01038570001 Vitis vinifera HOM05D005275 ORTHO05D006435 1.8e-53 213.4 193 58.0
PGR042G0357 Punica granatum HOM05D005275 ORTHO05D006435 5.3e-53 211.8 194 59.3
TWI39G0072 Tripterygium wilfordii HOM05D005275 ORTHO05D006435 2.6e-52 209.5 194 58.2
Nn8g39914 Nelumbo nucifera HOM05D005275 ORTHO05D006435 3.4e-52 209.1 185 60.5
Eucgr.H01489 Eucalyptus grandis HOM05D005275 ORTHO05D006435 1.3e-51 207.2 167 65.3
THA.LOC104811989 Tarenaya hassleriana HOM05D005275 ORTHO05D006435 5.0e-51 205.3 196 58.2
CiPaw.06G045000 Carya illinoinensis HOM05D005275 ORTHO05D006435 8.5e-51 204.5 195 56.9
Ciclev10022175m.g Citrus clementina HOM05D005275 ORTHO05D006435 1.1e-50 204.1 191 57.1
Cpa.g.sc69.87 Carica papaya HOM05D005275 ORTHO05D006435 1.4e-50 203.8 195 57.4
Atru.chr1.1611 Acer truncatum HOM05D005275 ORTHO05D006435 1.9e-50 203.4 185 58.9
Sc02g0003260 Simmondsia chinensis HOM05D005275 ORTHO05D006435 3.2e-50 202.6 210 55.2
Thecc.10G105800 Theobroma cacao HOM05D005275 ORTHO05D006435 3.2e-50 202.6 194 58.8
vmacro06395 Vaccinium macrocarpon HOM05D005275 ORTHO05D006435 4.2e-50 202.2 222 53.6
AUR62002807 Chenopodium quinoa HOM05D005275 ORTHO05D006435 2.1e-49 199.9 185 60.5
ATR0564G295 Amborella trichopoda HOM05D005275 ORTHO05D006435 3.6e-49 199.1 185 58.9
Aqoxy7G03390 Aquilegia oxysepala HOM05D005275 ORTHO05D006435 6.1e-49 198.4 186 57.0
Actinidia34231 Actinidia chinensis HOM05D005275 ORTHO05D006435 7.9e-49 198.0 163 65.6
COL.COLO4_38546 Corchorus olitorius HOM05D005275 ORTHO05D006435 2.3e-48 196.4 194 56.7
Rhsim03G0210600 Rhododendron simsii HOM05D005275 ORTHO05D006435 5.1e-48 195.3 235 50.6
AT5G53070 Arabidopsis thaliana HOM05D005275 ORTHO05D006435 6.7e-48 194.9 197 55.8
Carub.0008s1327 Capsella rubella HOM05D005275 ORTHO05D006435 6.7e-48 194.9 197 56.9
Gorai.009G304100 Gossypium raimondii HOM05D005275 ORTHO05D006435 2.0e-47 193.4 209 54.5
AL8G27700 Arabidopsis lyrata HOM05D005275 ORTHO05D006435 2.6e-47 193.0 197 55.3
CARHR266090 Cardamine hirsuta HOM05D005275 ORTHO05D006435 2.6e-47 193.0 197 56.3
Gohir.D09G028700 Gossypium hirsutum HOM05D005275 ORTHO05D006435 2.6e-47 193.0 184 58.2
Lj3g0024506 Lotus japonicus HOM05D005275 ORTHO05D006435 2.6e-47 193.0 198 57.6
MBI14_g34252_MAGBIO Magnolia biondii HOM05D005275 ORTHO05D006435 3.3e-47 192.6 185 57.3
Aa31LG3G9390 Aethionema arabicum HOM05D005626 ORTHO05D007372 4.4e-47 192.2 198 55.1
Gohir.D05G289000 Gossypium hirsutum HOM05D005275 ORTHO05D006435 4.4e-47 192.2 209 54.1
Ah.13g074120 Amaranthus hybridus HOM05D000770 ORTHO05D000586 5.7e-47 191.8 197 56.9
TAR374G1406 Trochodendron aralioides HOM05D005275 ORTHO05D006435 5.7e-47 191.8 150 66.7
Gohir.A10G201500 Gossypium hirsutum HOM05D005275 ORTHO05D006435 1.3e-46 190.7 209 53.6
Gohir.A11G223000 Gossypium hirsutum HOM05D005275 ORTHO05D006435 1.3e-46 190.7 209 53.6
Gohir.A12G028500 Gossypium hirsutum HOM05D005275 ORTHO05D006435 1.3e-46 190.7 209 53.6
Gohir.D01G152400 Gossypium hirsutum HOM05D005275 ORTHO05D006435 1.3e-46 190.7 209 53.6
ClCG05G009030 Citrullus lanatus HOM05D005275 ORTHO05D006435 1.7e-46 190.3 194 54.6
Manes.01G140200 Manihot esculenta HOM05D005275 ORTHO05D006435 1.7e-46 190.3 194 54.1
Sed0020778 Sechium edule HOM05D005275 ORTHO05D006435 1.7e-46 190.3 194 54.6
QL09p007976 Quercus lobata HOM05D005275 ORTHO05D006435 2.2e-46 189.9 195 52.3
Sed0013694 Sechium edule HOM05D005275 ORTHO05D006435 2.2e-46 189.9 194 53.6
BcaB05g22006 Brassica carinata HOM05D000442 ORTHO05D007032 2.8e-46 189.5 196 54.1
BcaC03g14459 Brassica carinata HOM05D005275 ORTHO05D006435 2.8e-46 189.5 196 54.1
A02p11320 Brassica napus HOM05D005275 ORTHO05D006435 2.8e-46 189.5 196 54.1
BraA02t06194Z Brassica rapa HOM05D005275 ORTHO05D006435 2.8e-46 189.5 196 54.1
Thhalv10014627m.g Eutrema salsugineum HOM05D005275 ORTHO05D006435 2.8e-46 189.5 196 54.6
Gohir.A08G051700 Gossypium hirsutum HOM05D005275 ORTHO05D006435 3.7e-46 189.1 209 53.1
BcaC04g20510 Brassica carinata HOM05D005275 ORTHO05D006435 4.8e-46 188.7 196 54.1
A10p10560 Brassica napus HOM05D005275 ORTHO05D006435 4.8e-46 188.7 196 54.1
C09p42780 Brassica napus HOM05D005275 ORTHO05D006435 4.8e-46 188.7 196 54.1
Gohir.A05G287800 Gossypium hirsutum HOM05D005275 ORTHO05D006435 4.8e-46 188.7 209 53.6
Gohir.A12G115900 Gossypium hirsutum HOM05D005275 ORTHO05D006435 4.8e-46 188.7 209 53.1
Gohir.D05G384500 Gossypium hirsutum HOM05D005275 ORTHO05D006435 4.8e-46 188.7 209 53.1
Solyc05g032880.3 Solanum lycopersicum HOM05D005275 ORTHO05D006435 6.3e-46 188.3 200 52.5
Sopen05g023270 Solanum pennellii HOM05D005275 ORTHO05D006435 6.3e-46 188.3 200 52.5
C02p18700 Brassica napus HOM05D005275 ORTHO05D006435 8.2e-46 188.0 196 53.6
BraA10t43140Z Brassica rapa HOM05D005275 ORTHO05D006435 8.2e-46 188.0 196 53.6
CANSAT21G1202 Cannabis sativa HOM05D005275 ORTHO05D006435 8.2e-46 188.0 195 54.9
Lalb_Chr22g0360521 Lupinus albus HOM05D005275 ORTHO05D006435 8.2e-46 188.0 196 55.6
Potri.012G017300 Populus trichocarpa HOM05D005275 ORTHO05D006435 8.2e-46 188.0 195 53.3
Gohir.A04G061600 Gossypium hirsutum HOM05D005275 ORTHO05D006435 1.1e-45 187.6 209 53.1
Peaxi162Scf00251g01010 Petunia axillaris HOM05D005275 ORTHO05D006435 1.1e-45 187.6 194 52.6
Sp6g15240 Schrenkiella parvula HOM05D005275 ORTHO05D006435 1.1e-45 187.6 196 54.1
PSO421G0063 Papaver somniferum HOM05D005275 ORTHO05D006435 1.4e-45 187.2 188 54.3
BcaB08g35669 Brassica carinata HOM05D005275 ORTHO05D006435 1.8e-45 186.8 196 53.6
Cfa016214 Carpinus fangiana HOM05D005275 ORTHO05D006435 1.8e-45 186.8 195 52.8
CsaV3_3G019750 Cucumis sativus L. HOM05D005275 ORTHO05D006435 1.8e-45 186.8 194 54.1
Nitab4.5_0004499g0010 Nicotiana tabacum HOM05D005275 ORTHO05D006435 2.4e-45 186.4 166 57.2
Potri.012G121228 Populus trichocarpa HOM05D005275 ORTHO05D006435 2.4e-45 186.4 195 52.8
Ca_10483_v3 Cicer arietinum L. HOM05D005275 ORTHO05D006435 3.1e-45 186.0 198 54.5
AUR62014115 Chenopodium quinoa HOM05D005275 ORTHO05D006435 5.3e-45 185.3 239 49.4
Glyma.06G288700 Glycine max HOM05D005275 ORTHO05D006435 5.3e-45 185.3 198 53.5
Nitab4.5_0000006g0650 Nicotiana tabacum HOM05D005275 ORTHO05D006435 5.3e-45 185.3 166 57.2
CDE01G0034 Ceratophyllum demersum HOM05D005275 ORTHO05D006435 7.0e-45 184.9 172 59.3
RcHm_v2.0_Chr1g0381511 Rosa chinensis HOM05D005275 ORTHO05D006435 7.0e-45 184.9 201 54.7
Psat7g227360 Pisum sativum HOM05D005275 ORTHO05D006435 1.2e-44 184.1 198 54.5
TPR.G34143 Trifolium pratense HOM05D005275 ORTHO05D006435 1.5e-44 183.7 198 53.0
Peaxi162Scf00581g00021 Petunia axillaris HOM05D005275 ORTHO05D006435 2.6e-44 183.0 222 48.2
Glyma.19G085300 Glycine max HOM05D005275 ORTHO05D006435 3.5e-44 182.6 198 55.1
FAN10G0352 Fragaria x ananassa HOM05D005275 ORTHO05D006435 5.9e-44 181.8 197 54.3
BolC9t57154H Brassica oleracea HOM05D005275 ORTHO05D006435 7.7e-44 181.4 204 52.0
FAN01G0712 Fragaria x ananassa HOM05D000442 ORTHO05D007032 7.7e-44 181.4 172 59.3
FAN10G2096 Fragaria x ananassa HOM05D000442 ORTHO05D007032 3.8e-43 179.1 172 58.7
Phvul.008G150700 Phaseolus vulgaris HOM05D005275 ORTHO05D006435 5.0e-43 178.7 198 52.5
BolC2t08015H Brassica oleracea HOM05D005275 ORTHO05D006435 6.5e-43 178.3 210 50.0
Gohir.A07G020100 Gossypium hirsutum HOM05D005275 ORTHO05D006435 6.5e-43 178.3 164 60.4
arahy.Tifrunner.gnm1.ann1.5IWG5U Arachis hypogaea HOM05D005275 ORTHO05D006435 8.5e-43 177.9 197 55.3
Glyma.16G061500 Glycine max HOM05D005275 ORTHO05D006435 8.5e-43 177.9 198 51.0
PSO675G7727 Papaver somniferum HOM05D005275 ORTHO05D006435 8.5e-43 177.9 191 50.8
Lj1C1021T21 Lonicera japonica HOM05D005275 ORTHO05D006435 1.1e-42 177.6 196 54.6
CDE02G4591 Ceratophyllum demersum HOM05D005275 ORTHO05D006435 1.5e-42 177.2 180 57.8
Medtr5g038540 Medicago truncatula HOM05D005275 ORTHO05D006435 2.5e-42 176.4 198 52.5
MD07G1293600 Malus domestica HOM05D005275 ORTHO05D006435 5.5e-42 175.3 201 52.2
SHI02356 Sapria himalayana HOM05D005275 ORTHO05D006435 5.5e-42 175.3 209 49.8
arahy.Tifrunner.gnm1.ann1.T9K8GJ Arachis hypogaea HOM05D005275 ORTHO05D006435 7.2e-42 174.9 197 54.3
arahy.Tifrunner.gnm1.ann1.AF7P3K Arachis hypogaea HOM05D005275 ORTHO05D006435 9.4e-42 174.5 197 53.8
HPP92_008880 Vanilla planifolia HOM05D005275 ORTHO05D006435 2.7e-41 172.9 162 59.9
Hma1.2p1_1507F.1_g287680 Hydrangea macrophylla HOM05D005275 ORTHO05D006435 3.6e-41 172.6 133 67.7
Sabra12G0015200 Salix brachista HOM05D005275 ORTHO05D007032 3.6e-41 172.6 224 47.3
Ciclev10023889m.g Citrus clementina HOM05D005275 ORTHO05D006435 4.7e-41 172.2 193 50.3
Medtr1g067700 Medicago truncatula HOM05D005275 ORTHO05D006435 1.0e-40 171.0 200 51.5
FAN03G2656 Fragaria x ananassa HOM05D005626 ORTHO05D007032 1.4e-40 170.6 167 58.1
Prupe.2G313400 Prunus persica HOM05D005275 ORTHO05D006435 2.3e-40 169.9 199 49.7
Haze_00229 Corylus avellana HOM05D005275 ORTHO05D006435 6.7e-40 168.3 189 50.8
Os05g0528900 Oryza sativa ssp. japonica HOM05D005275 ORTHO05D006435 5.7e-39 165.2 164 54.9
PGSC0003DMG400005324 Solanum tuberosum HOM05D005275 ORTHO05D006435 3.5e-36 156.0 170 51.2
Zm00001eb199670 Zea mays HOM05D005275 ORTHO05D006435 3.5e-36 156.0 236 41.5
Sc20g0002940 Simmondsia chinensis HOM05D005275 ORTHO05D006435 5.0e-35 152.1 134 61.2
Dinv21061 Davidia involucrata HOM05D005275 ORTHO05D006435 7.2e-34 148.3 95 78.9
Gohir.A10G000100 Gossypium hirsutum HOM05D005275 ORTHO05D006435 7.2e-34 148.3 136 59.6
Duzib128G1952 Durio zibethinus HOM05D005275 ORTHO05D006435 1.8e-32 143.7 137 60.6
VMungo1383G0294 Vigna mungo HOM05D005275 ORTHO05D006435 1.8e-32 143.7 169 51.5
FvH4_7g32000 Fragaria vesca HOM05D005275 ORTHO05D006435 5.7e-31 138.7 138 58.7
Aa31LG3G9400 Aethionema arabicum HOM05D005275 ORTHO05D006435 1.3e-30 137.5 126 61.1
BcaB05g22010 Brassica carinata HOM05D005626 ORTHO05D007372 1.3e-30 137.5 120 62.5
arahy.Tifrunner.gnm1.ann1.G3VF9V Arachis hypogaea HOM05D005275 ORTHO05D006435 1.9e-26 123.6 321 33.3
Ciclev10024016m.g Citrus clementina HOM05D005275 ORTHO05D006435 6.1e-25 118.6 90 62.2
Gohir.A12G032500 Gossypium hirsutum HOM05D005275 ORTHO05D006435 5.7e-23 112.1 137 51.8
CBR_g30099 Chara braunii HOM05D005275 ORTHO05D006435 1.3e-22 110.9 172 39.0
MELO3C019369.2 Cucumis melo HOM05D005275 ORTHO05D006435 6.3e-22 108.6 123 50.4
Pp3c9_14000 Physcomitrium patens HOM05D005275 ORTHO05D006435 1.8e-21 107.1 161 42.9
SEGI_07593 Sequoiadendron giganteum HOM05D005275 ORTHO05D006435 1.8e-21 107.1 115 49.6
Oeu037051.1 Olea europaea HOM05D005275 ORTHO05D006435 2.4e-21 106.7 93 63.4
Sc21g0003940 Simmondsia chinensis HOM05D007402 ORTHO05D003673 3.1e-21 106.3 123 49.6
SMO334G0054 Selaginella moellendorffii HOM05D005275 ORTHO05D006435 5.0e-19 99.0 147 38.1
Mapoly0074s0056 Marchantia polymorpha HOM05D005275 ORTHO05D006435 9.5e-18 94.7 149 37.6
Lsat_1_v5_gn_9_70281 Lactuca sativa HOM05D005275 ORTHO05D006435 8.9e-16 88.2 133 43.6
Zm00001eb397120 Zea mays HOM05D005275 ORTHO05D006435 4.1e-13 79.3 72 56.9
Zm00001eb089870 Zea mays HOM05D005275 ORTHO05D006435 4.6e-12 75.9 98 44.9
AagrBONN_evm.TU.Sc2ySwM_228.762 Anthoceros agrestis HOM05D005275 ORTHO05D006435 1.3e-11 74.3 159 36.5
CBR_g36656 Chara braunii HOM05D006252 ORTHO05D007909 2.3e-08 63.5 162 27.8
MCO07G577 Micromonas commoda HOM05D005275 ORTHO05D006435 8.3e-06 55.1 151 33.1


User provided reference genes

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