Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold54G19606 Striga asiatica HOM05D009140 ORTHO05D010215 8.6e-78 293.5 140 100.0
SGA_v2.0_scaffold1540G53981 Striga asiatica HOM05D009140 ORTHO05D010636 6.2e-52 207.6 101 100.0
SGA_v2.0_scaffold53G19333 Striga asiatica HOM05D009140 ORTHO05D010636 5.3e-27 124.8 129 44.2
SGA_v2.0_scaffold134G34731 Striga asiatica HOM05D009140 ORTHO05D000004 7.6e-26 120.9 129 43.4
SGA_v2.0_scaffold67G22642 Striga asiatica HOM05D000407 ORTHO05D000004 8.7e-22 107.5 134 41.8
SGA_v2.0_scaffold127G33968 Striga asiatica HOM05D009140 ORTHO05D000004 1.1e-21 107.1 121 42.1
SGA_v2.0_scaffold12G06017 Striga asiatica HOM05D009140 ORTHO05D010636 3.7e-20 102.1 133 39.1
SGA_v2.0_scaffold151G36755 Striga asiatica HOM05D000003 ORTHO05D000004 3.1e-19 99.0 136 37.5
SGA_v2.0_scaffold38G15008 Striga asiatica HOM05D000429 ORTHO05D021023 2.6e-18 95.9 108 41.7
SGA_v2.0_scaffold26G11238 Striga asiatica HOM05D008147 ORTHO05D010215 5.8e-18 94.7 116 41.4
SGA_v2.0_scaffold6G03466 Striga asiatica HOM05D000003 ORTHO05D000004 5.8e-18 94.7 134 34.3
SGA_v2.0_scaffold11G05791 Striga asiatica HOM05D000563 ORTHO05D000536 1.3e-17 93.6 132 36.4
SGA_v2.0_scaffold93G28364 Striga asiatica HOM05D009140 ORTHO05D010636 6.5e-17 91.3 125 35.2
SGA_v2.0_scaffold17G08173 Striga asiatica HOM05D000003 ORTHO05D000004 5.5e-16 88.2 136 36.0
SGA_v2.0_scaffold279G46783 Striga asiatica HOM05D005209 ORTHO05D006188 2.7e-15 85.9 135 30.4
SGA_v2.0_scaffold61G21170 Striga asiatica HOM05D009140 ORTHO05D010215 5.1e-14 81.6 112 36.6
SGA_v2.0_scaffold259G45819 Striga asiatica HOM05D000003 ORTHO05D000004 3.3e-13 79.0 124 36.3
SGA_v2.0_scaffold118G32446 Striga asiatica HOM05D000003 ORTHO05D000004 4.3e-13 78.6 109 35.8
SGA_v2.0_scaffold250G45022 Striga asiatica HOM05D000003 ORTHO05D000004 9.6e-13 77.4 133 30.1
SGA_v2.0_scaffold127G33986 Striga asiatica HOM05D009140 ORTHO05D000004 1.3e-12 77.0 134 32.8
SGA_v2.0_scaffold102G29891 Striga asiatica HOM05D003766 ORTHO05D004607 1.6e-12 76.6 109 42.2
BolC3t19376H Brassica oleracea HOM05D000003 ORTHO05D000004 4.1e-11 72.0 135 31.9
QL01p005053 Quercus lobata HOM05D000003 ORTHO05D000004 4.1e-11 72.0 128 32.0
QL09p015564 Quercus lobata HOM05D000003 ORTHO05D000004 4.1e-11 72.0 128 32.0
BcaB01g02064 Brassica carinata HOM05D000496 ORTHO05D000411 6.9e-11 71.2 128 28.1
SGA_v2.0_scaffold17G08062 Striga asiatica HOM05D000003 ORTHO05D000006 9.0e-11 70.9 137 29.9
CANSAT78G1434 Cannabis sativa HOM05D000003 ORTHO05D000004 1.5e-10 70.1 129 29.5
Rhsim01G0076000 Rhododendron simsii HOM05D000003 ORTHO05D000004 1.5e-10 70.1 133 27.1
BolC4t22146H Brassica oleracea HOM05D001239 ORTHO05D000925 2.0e-10 69.7 130 30.0
CANSAT80G0199 Cannabis sativa HOM05D000003 ORTHO05D000004 2.0e-10 69.7 131 27.5
SGA_v2.0_scaffold4G02180 Striga asiatica HOM05D000688 ORTHO05D004737 2.6e-10 69.3 134 27.6
PSO675G0212 Papaver somniferum HOM05D000003 ORTHO05D001026 5.9e-10 68.2 127 32.3
SGA_v2.0_scaffold2392G54112 Striga asiatica HOM05D000003 ORTHO05D000006 1.0e-09 67.4 114 34.2
SGA_v2.0_scaffold43G16397 Striga asiatica HOM05D009140 ORTHO05D010215 1.0e-09 67.4 104 38.5
CANSAT80G0006 Cannabis sativa HOM05D000003 ORTHO05D000004 1.3e-09 67.0 129 30.2
PSO541G0013 Papaver somniferum HOM05D000003 ORTHO05D000004 1.3e-09 67.0 133 24.8
SGA_v2.0_scaffold215G42323 Striga asiatica HOM05D008147 ORTHO05D010215 1.7e-09 66.6 104 30.8
BcaB07g32788 Brassica carinata HOM05D000003 ORTHO05D000004 2.9e-09 65.9 120 28.3
CANSAT01G2972 Cannabis sativa HOM05D000003 ORTHO05D000004 3.8e-09 65.5 129 28.7
AT4G29090 Arabidopsis thaliana HOM05D000003 ORTHO05D000004 5.0e-09 65.1 134 27.6
CANSAT01G3218 Cannabis sativa HOM05D000003 ORTHO05D000004 5.0e-09 65.1 135 23.7
CANSAT64G0950 Cannabis sativa HOM05D000003 ORTHO05D000167 5.0e-09 65.1 128 28.9
QL11p055311 Quercus lobata HOM05D000003 ORTHO05D000004 5.0e-09 65.1 127 32.3
SGA_v2.0_scaffold3G01538 Striga asiatica HOM05D009140 ORTHO05D010636 6.5e-09 64.7 76 34.2
CANSAT21G1723 Cannabis sativa HOM05D000003 ORTHO05D000004 8.5e-09 64.3 128 29.7
CANSAT25G2465 Cannabis sativa HOM05D000003 ORTHO05D000167 8.5e-09 64.3 128 28.9
CANSAT54G1043 Cannabis sativa HOM05D000003 ORTHO05D000004 8.5e-09 64.3 127 26.0
PSO384G4414 Papaver somniferum HOM05D000003 ORTHO05D000004 8.5e-09 64.3 128 28.9
SGA_v2.0_scaffold61G21264 Striga asiatica HOM05D017438 ORTHO05D000004 8.5e-09 64.3 130 30.8
Rhsim11G0146500 Rhododendron simsii HOM05D000003 ORTHO05D000004 1.1e-08 63.9 124 28.2
SGA_v2.0_scaffold178G39506 Striga asiatica HOM05D009140 ORTHO05D010636 1.1e-08 63.9 96 38.5
SGA_v2.0_scaffold17G08016 Striga asiatica HOM05D009140 ORTHO05D010215 1.1e-08 63.9 63 39.7
SGA_v2.0_scaffold349G49619 Striga asiatica HOM05D008147 ORTHO05D010215 1.1e-08 63.9 87 39.1
BraA06t25657Z Brassica rapa HOM05D000003 ORTHO05D000004 1.9e-08 63.2 130 26.2
CANSAT21G2319 Cannabis sativa HOM05D000003 ORTHO05D000004 1.9e-08 63.2 129 27.1
CANSAT64G1009 Cannabis sativa HOM05D000003 ORTHO05D000004 1.9e-08 63.2 128 26.6
Rhsim01G0174200 Rhododendron simsii HOM05D000003 ORTHO05D000004 2.5e-08 62.8 124 29.0
Atru.chr2.2135 Acer truncatum HOM05D000003 ORTHO05D000004 3.2e-08 62.4 120 29.2
CANSAT56G1118 Cannabis sativa HOM05D000003 ORTHO05D000167 3.2e-08 62.4 119 25.2
AUR62016609 Chenopodium quinoa HOM05D000003 ORTHO05D000167 3.2e-08 62.4 118 28.0
SGA_v2.0_scaffold244G44341 Striga asiatica HOM05D000003 ORTHO05D000004 3.2e-08 62.4 106 33.0
SGA_v2.0_scaffold57G20155 Striga asiatica HOM05D009140 ORTHO05D010636 3.2e-08 62.4 87 37.9
SGA_v2.0_scaffold65G22183 Striga asiatica HOM05D009140 ORTHO05D010215 3.2e-08 62.4 65 40.0
Atru.chr10.114 Acer truncatum HOM05D000003 ORTHO05D000167 4.2e-08 62.0 116 31.0
Atru.chr10.97 Acer truncatum HOM05D000003 ORTHO05D000167 4.2e-08 62.0 116 31.0
PSO478G2405 Papaver somniferum HOM05D000003 ORTHO05D000004 4.2e-08 62.0 116 32.8
SGA_v2.0_scaffold208G41982 Striga asiatica HOM05D009140 ORTHO05D010636 4.2e-08 62.0 66 45.5
TWI12G0720 Tripterygium wilfordii HOM05D000003 ORTHO05D000004 4.2e-08 62.0 131 29.0
QL05p078226 Quercus lobata HOM05D000003 ORTHO05D000004 5.5e-08 61.6 137 27.0
CANSAT25G1387 Cannabis sativa HOM05D000003 ORTHO05D000004 7.2e-08 61.2 126 27.0
PSO724G0478 Papaver somniferum HOM05D000003 ORTHO05D000004 7.2e-08 61.2 133 27.1
SGA_v2.0_scaffold132G34546 Striga asiatica HOM05D010565 ORTHO05D011213 7.2e-08 61.2 91 36.3
SGA_v2.0_scaffold484G52346 Striga asiatica HOM05D000003 ORTHO05D010636 7.2e-08 61.2 100 35.0
CANSAT01G2780 Cannabis sativa HOM05D000003 ORTHO05D000004 9.3e-08 60.8 127 27.6
CANSAT56G0533 Cannabis sativa HOM05D000003 ORTHO05D000004 9.3e-08 60.8 127 27.6
QL04p096362 Quercus lobata HOM05D000003 ORTHO05D000004 9.3e-08 60.8 131 27.5
SGA_v2.0_scaffold382G50402 Striga asiatica HOM05D000003 ORTHO05D000004 9.3e-08 60.8 99 29.3
BolC8t47524H Brassica oleracea HOM05D000003 ORTHO05D000004 1.2e-07 60.5 129 24.8
CANSAT25G3451 Cannabis sativa HOM05D000003 ORTHO05D000004 1.2e-07 60.5 129 27.1
RcHm_v2.0_Chr4g0398671 Rosa chinensis HOM05D000003 ORTHO05D010102 1.2e-07 60.5 131 26.0
TPR.G19381 Trifolium pratense HOM05D000003 ORTHO05D000004 1.2e-07 60.5 127 25.2
CANSAT64G0247 Cannabis sativa HOM05D000003 ORTHO05D000004 1.6e-07 60.1 127 27.6
CANSAT64G1612 Cannabis sativa HOM05D000003 ORTHO05D000004 1.6e-07 60.1 125 27.2
TAR273G0004 Trochodendron aralioides HOM05D000003 ORTHO05D000004 1.6e-07 60.1 127 29.1
Atru.chr7.396 Acer truncatum HOM05D000003 ORTHO05D000167 2.1e-07 59.7 124 29.0
CANSAT54G0904 Cannabis sativa HOM05D000003 ORTHO05D000167 2.1e-07 59.7 123 26.8
SGA_v2.0_scaffold299G47717 Striga asiatica HOM05D000003 ORTHO05D000004 2.1e-07 59.7 117 29.1
SGA_v2.0_scaffold36G14413 Striga asiatica HOM05D000003 ORTHO05D011213 2.1e-07 59.7 86 39.5
Aqoxy1G02661 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 2.7e-07 59.3 128 28.9
Atru.chr2.314 Acer truncatum HOM05D000003 ORTHO05D000126 3.6e-07 58.9 134 28.4
BolC7t41032H Brassica oleracea HOM05D000003 ORTHO05D000004 3.6e-07 58.9 132 25.0
CANSAT54G2762 Cannabis sativa HOM05D000003 ORTHO05D000004 3.6e-07 58.9 127 27.6
CiPaw.06G023000 Carya illinoinensis HOM05D000003 ORTHO05D000004 3.6e-07 58.9 126 26.2
QL08p031025 Quercus lobata HOM05D000003 ORTHO05D000004 3.6e-07 58.9 131 26.7
SGA_v2.0_scaffold4G01975 Striga asiatica HOM05D010565 ORTHO05D011213 3.6e-07 58.9 69 42.0
BcaB03g16558 Brassica carinata HOM05D000003 ORTHO05D000006 4.6e-07 58.5 135 28.1
BcaNung00070 Brassica carinata HOM05D000496 ORTHO05D000411 4.6e-07 58.5 129 25.6
CANSAT64G1116 Cannabis sativa HOM05D000003 ORTHO05D000004 4.6e-07 58.5 135 22.2
QL12p025805 Quercus lobata HOM05D000967 ORTHO05D000796 4.6e-07 58.5 128 25.0
MSTRG.25432 Avicennia marina HOM05D000003 ORTHO05D000004 6.1e-07 58.2 118 26.3
BcaC04g20486 Brassica carinata HOM05D000003 ORTHO05D001498 6.1e-07 58.2 130 26.9
BcaC06g36253 Brassica carinata HOM05D000496 ORTHO05D000411 6.1e-07 58.2 128 24.2
QL04p073918 Quercus lobata HOM05D000003 ORTHO05D000004 6.1e-07 58.2 116 27.6
CANSAT64G2253 Cannabis sativa HOM05D000003 ORTHO05D000004 7.9e-07 57.8 118 24.6
QL03p029989 Quercus lobata HOM05D000003 ORTHO05D000004 7.9e-07 57.8 132 26.5
SGA_v2.0_scaffold22G09699 Striga asiatica HOM05D000003 ORTHO05D000004 7.9e-07 57.8 107 31.8
SGA_v2.0_scaffold5G02882 Striga asiatica HOM05D001043 ORTHO05D001555 7.9e-07 57.8 89 30.3
TAR121G0003 Trochodendron aralioides HOM05D000003 ORTHO05D000004 7.9e-07 57.8 130 21.5
EL10Ac2g04418 Beta vulgaris HOM05D000003 ORTHO05D000004 1.0e-06 57.4 119 27.7
BolC3t16094H Brassica oleracea HOM05D000003 ORTHO05D016458 1.0e-06 57.4 124 23.4
CANSAT25G3689 Cannabis sativa HOM05D000003 ORTHO05D000167 1.0e-06 57.4 116 26.7
CANSAT56G2299 Cannabis sativa HOM05D000003 ORTHO05D000004 1.0e-06 57.4 131 23.7
Cc08_g06220 Coffea canephora HOM05D000003 ORTHO05D000004 1.0e-06 57.4 139 25.9
RcHm_v2.0_Chr7g0208481 Rosa chinensis HOM05D000003 ORTHO05D000004 1.0e-06 57.4 102 27.5
Atru.chr3.1567 Acer truncatum HOM05D000003 ORTHO05D000004 1.3e-06 57.0 132 23.5
AUR62015302 Chenopodium quinoa HOM05D000003 ORTHO05D000004 1.3e-06 57.0 100 33.0
Atru.chr10.298 Acer truncatum HOM05D000003 ORTHO05D000004 1.8e-06 56.6 130 24.6
Atru.chr13.1676 Acer truncatum HOM05D000003 ORTHO05D000006 1.8e-06 56.6 121 28.1
CANSAT54G3015 Cannabis sativa HOM05D000003 ORTHO05D000167 1.8e-06 56.6 120 25.8
PSO675G9045 Papaver somniferum HOM05D000003 ORTHO05D000004 1.8e-06 56.6 128 27.3
QL07p013368 Quercus lobata HOM05D000003 ORTHO05D000004 1.8e-06 56.6 134 29.9
SGA_v2.0_scaffold83G26428 Striga asiatica HOM05D000003 ORTHO05D051420 1.8e-06 56.6 100 29.0
CANSAT80G2386 Cannabis sativa HOM05D000003 ORTHO05D000167 2.3e-06 56.2 112 25.9
MD06G1107000 Malus domestica HOM05D000003 ORTHO05D000004 2.3e-06 56.2 133 26.3
QL04p022409 Quercus lobata HOM05D000003 ORTHO05D000004 2.3e-06 56.2 131 28.2
SGA_v2.0_scaffold130G34315 Striga asiatica HOM05D000003 ORTHO05D000004 2.3e-06 56.2 126 25.4
SGA_v2.0_scaffold16G07830 Striga asiatica HOM05D035830 ORTHO05D010215 2.3e-06 56.2 68 39.7
SGA_v2.0_scaffold246G44809 Striga asiatica HOM05D000003 ORTHO05D000004 2.3e-06 56.2 99 33.3
Atru.chr5.2301 Acer truncatum HOM05D000003 ORTHO05D000004 3.0e-06 55.8 135 31.1
EL10Ac4g08380 Beta vulgaris HOM05D000003 ORTHO05D000004 3.0e-06 55.8 102 29.4
BcaC07g38152 Brassica carinata HOM05D000003 ORTHO05D000004 3.0e-06 55.8 120 26.7
CANSAT21G2012 Cannabis sativa HOM05D000003 ORTHO05D000004 3.0e-06 55.8 124 26.6
CANSAT54G1575 Cannabis sativa HOM05D000003 ORTHO05D000004 3.0e-06 55.8 139 25.2
QL10p031903 Quercus lobata HOM05D000003 ORTHO05D000004 3.0e-06 55.8 136 26.5
Atru.chr10.1454 Acer truncatum HOM05D000003 ORTHO05D000167 3.9e-06 55.5 126 26.2
CANSAT01G2533 Cannabis sativa HOM05D000003 ORTHO05D000167 3.9e-06 55.5 124 26.6
CANSAT25G2690 Cannabis sativa HOM05D000003 ORTHO05D000004 3.9e-06 55.5 127 26.0
CANSAT64G1960 Cannabis sativa HOM05D000003 ORTHO05D000167 3.9e-06 55.5 128 25.8
RhsimUnG0010200 Rhododendron simsii HOM05D000003 ORTHO05D000004 3.9e-06 55.5 134 25.4
SGA_v2.0_scaffold76G25079 Striga asiatica HOM05D009140 ORTHO05D000004 3.9e-06 55.5 134 28.4
Aa31sc466G10 Aethionema arabicum HOM05D000003 ORTHO05D000004 5.1e-06 55.1 133 26.3
BraA04t16803Z Brassica rapa HOM05D000003 ORTHO05D001498 5.1e-06 55.1 127 26.0
PSO017G4915 Papaver somniferum HOM05D000003 ORTHO05D000004 5.1e-06 55.1 132 26.5
QL02p087863 Quercus lobata HOM05D000003 ORTHO05D000004 5.1e-06 55.1 133 22.6
SGA_v2.0_scaffold117G32363 Striga asiatica HOM05D009140 ORTHO05D010215 5.1e-06 55.1 83 32.5
CANSAT11G0789 Cannabis sativa HOM05D000003 ORTHO05D000004 6.7e-06 54.7 127 21.3
CANSAT54G2323 Cannabis sativa HOM05D000003 ORTHO05D000167 6.7e-06 54.7 124 23.4
CANSAT78G0730 Cannabis sativa HOM05D000003 ORTHO05D000004 6.7e-06 54.7 128 26.6
AUR62002762 Chenopodium quinoa HOM05D001201 ORTHO05D001100 6.7e-06 54.7 133 27.1
Rhsim04G0060300 Rhododendron simsii HOM05D000003 ORTHO05D000004 6.7e-06 54.7 132 24.2
Atru.chr13.2597 Acer truncatum HOM05D000003 ORTHO05D000004 8.7e-06 54.3 123 26.0
Atru.chr7.469 Acer truncatum HOM05D000003 ORTHO05D000004 8.7e-06 54.3 129 26.4
Aqoxy1G03455 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 8.7e-06 54.3 130 22.3
CANSAT80G2861 Cannabis sativa HOM05D000003 ORTHO05D000004 8.7e-06 54.3 128 26.6
SGA_v2.0_scaffold982G53767 Striga asiatica HOM05D009140 ORTHO05D000004 8.7e-06 54.3 93 35.5


User provided reference genes

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