Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold52G19076 Striga asiatica HOM05D000538 ORTHO05D000614 8.0e-127 457.6 325 100.0
SGA_v2.0_scaffold62G21345 Striga asiatica HOM05D000538 ORTHO05D000614 1.1e-67 261.2 379 57.3
SGA_v2.0_scaffold52G19146 Striga asiatica HOM05D000538 ORTHO05D000614 2.0e-53 213.8 254 57.5
SGA_v2.0_scaffold62G21349 Striga asiatica HOM05D000538 ORTHO05D000614 1.4e-51 207.6 250 53.6
SGA_v2.0_scaffold52G19092 Striga asiatica HOM05D000538 ORTHO05D000614 1.9e-51 207.2 358 54.7
SGA_v2.0_scaffold52G19085 Striga asiatica HOM05D000538 ORTHO05D000614 1.8e-49 200.7 344 59.9
SGA_v2.0_scaffold52G19155 Striga asiatica HOM05D000538 ORTHO05D000614 2.1e-47 193.7 332 56.3
SGA_v2.0_scaffold12G06174 Striga asiatica HOM05D000538 ORTHO05D000614 8.1e-47 191.8 347 50.7
SGA_v2.0_scaffold52G19023 Striga asiatica HOM05D000538 ORTHO05D000614 3.2e-43 179.9 444 43.7
SGA_v2.0_scaffold52G19083 Striga asiatica HOM05D000538 ORTHO05D000614 5.5e-43 179.1 358 49.7
SGA_v2.0_scaffold52G19080 Striga asiatica HOM05D000538 ORTHO05D000614 8.2e-39 165.2 410 41.2
SGA_v2.0_scaffold52G19112 Striga asiatica HOM05D000538 ORTHO05D000614 1.8e-38 164.1 385 45.5
SGA_v2.0_scaffold52G19087 Striga asiatica HOM05D000538 ORTHO05D000614 2.6e-37 160.2 405 40.2
SGA_v2.0_scaffold157G37398 Striga asiatica HOM05D000538 ORTHO05D000614 1.5e-32 144.4 355 49.3
SGA_v2.0_scaffold469G52068 Striga asiatica HOM05D000538 ORTHO05D000614 9.7e-32 141.7 159 55.3
SGA_v2.0_scaffold157G37400 Striga asiatica HOM05D006900 ORTHO05D008651 1.4e-30 137.9 243 50.6
SalBow5G1539 Salvia bowleyana HOM05D000538 ORTHO05D000614 6.5e-20 102.4 252 33.7
Migut.M01263 Erythranthe guttata HOM05D000538 ORTHO05D000614 1.2e-18 98.2 218 36.7
Oeu058169.1 Olea europaea HOM05D000538 ORTHO05D000614 1.6e-18 97.8 203 33.0
Oeu058171.1 Olea europaea HOM05D000538 ORTHO05D000614 1.6e-18 97.8 212 32.1
MSTRG.9015 Avicennia marina HOM05D000538 ORTHO05D000614 3.6e-18 96.7 268 34.7
SalBow6G5108 Salvia bowleyana HOM05D000538 ORTHO05D000614 3.0e-17 93.6 261 32.2
SalBow6G4402 Salvia bowleyana HOM05D000538 ORTHO05D000614 3.9e-17 93.2 261 32.2
SGA_v2.0_scaffold24G10697 Striga asiatica HOM05D000538 ORTHO05D000614 3.9e-17 93.2 78 65.4
MSTRG.13164 Avicennia marina HOM05D000538 ORTHO05D000614 5.2e-17 92.8 249 31.7
MSTRG.14651 Avicennia marina HOM05D000538 ORTHO05D000614 1.5e-16 91.3 207 32.9
Thecc.07G148000 Theobroma cacao HOM05D000538 ORTHO05D000614 1.7e-15 87.8 249 29.3
Oeu063070.2 Olea europaea HOM05D000538 ORTHO05D000614 3.7e-15 86.7 278 28.4
PGSC0003DMG400030831 Solanum tuberosum HOM05D000538 ORTHO05D000614 4.1e-14 83.2 209 31.6
TWI38G2394 Tripterygium wilfordii HOM05D000538 ORTHO05D000614 1.6e-13 81.3 179 33.5
TWI39G0036 Tripterygium wilfordii HOM05D000538 ORTHO05D000614 2.0e-13 80.9 177 33.3
Migut.H01546 Erythranthe guttata HOM05D000538 ORTHO05D000614 2.6e-13 80.5 268 29.1
HanXRQChr01g0019011 Helianthus annuus HOM05D000538 ORTHO05D000614 4.5e-13 79.7 202 32.2
Sopen04g029590 Solanum pennellii HOM05D000538 ORTHO05D000614 1.7e-12 77.8 135 39.3
Gorai.002G037800 Gossypium raimondii HOM05D000538 ORTHO05D000614 2.2e-12 77.4 253 28.5
Gohir.A01G040800 Gossypium hirsutum HOM05D000538 ORTHO05D000614 2.9e-12 77.0 256 27.3
MELO3C007351.2 Cucumis melo HOM05D000538 ORTHO05D000614 3.8e-12 76.6 212 30.7
Lalb_Chr05g0228411 Lupinus albus HOM05D000538 ORTHO05D000614 3.8e-12 76.6 206 26.7
HanXRQChr03g0087661 Helianthus annuus HOM05D000538 ORTHO05D000614 5.0e-12 76.3 208 33.2
Oeu051232.1 Olea europaea HOM05D000538 ORTHO05D000614 5.0e-12 76.3 192 33.3
Lj8P121T27 Lonicera japonica HOM05D000538 ORTHO05D000614 6.5e-12 75.9 257 27.6
QL01p044471 Quercus lobata HOM05D000538 ORTHO05D000614 6.5e-12 75.9 84 45.2
Sed0011252 Sechium edule HOM05D000538 ORTHO05D000614 6.5e-12 75.9 253 27.3
ClCG02G001630 Citrullus lanatus HOM05D000538 ORTHO05D000614 8.5e-12 75.5 193 24.9
Nitab4.5_0000786g0080 Nicotiana tabacum HOM05D000538 ORTHO05D000614 1.1e-11 75.1 152 36.2
Actinidia12491 Actinidia chinensis HOM05D000538 ORTHO05D000614 1.9e-11 74.3 197 24.9
Lsat_1_v5_gn_1_81901 Lactuca sativa HOM05D000538 ORTHO05D000614 1.9e-11 74.3 65 52.3
Nitab4.5_0008264g0010 Nicotiana tabacum HOM05D000538 ORTHO05D000614 1.9e-11 74.3 152 36.2
Peaxi162Scf00030g00224 Petunia axillaris HOM05D000538 ORTHO05D000614 1.9e-11 74.3 115 42.6
Duzib268G1429 Durio zibethinus HOM05D000538 ORTHO05D000614 2.5e-11 73.9 253 28.9
QL93p0107_0595 Quercus lobata HOM05D000538 ORTHO05D000614 3.2e-11 73.6 190 28.9
Atru.chr1.3753 Acer truncatum HOM05D000538 ORTHO05D000614 4.2e-11 73.2 203 32.0
Duzib213G0266 Durio zibethinus HOM05D000538 ORTHO05D000614 4.2e-11 73.2 250 26.4
TWI38G1831 Tripterygium wilfordii HOM05D000538 ORTHO05D000614 5.5e-11 72.8 209 32.1
MELO3C027126.2 Cucumis melo HOM05D000538 ORTHO05D000614 7.2e-11 72.4 219 28.3
Duzib213G0460 Durio zibethinus HOM05D000538 ORTHO05D000614 7.2e-11 72.4 251 26.3
QL04p080862 Quercus lobata HOM05D000538 ORTHO05D000614 7.2e-11 72.4 72 48.6
QL02p026523 Quercus lobata HOM05D000538 ORTHO05D000614 9.4e-11 72.0 62 53.2
QL09p048604 Quercus lobata HOM05D000538 ORTHO05D000614 9.4e-11 72.0 72 48.6
QL93p0107_0037 Quercus lobata HOM05D000538 ORTHO05D000614 1.2e-10 71.6 71 49.3
QL05p077181 Quercus lobata HOM05D000538 ORTHO05D000614 1.6e-10 71.2 84 42.9
Gohir.A13G018100 Gossypium hirsutum HOM05D000538 ORTHO05D000614 2.1e-10 70.9 249 26.1
COL.COLO4_17402 Corchorus olitorius HOM05D000538 ORTHO05D000614 2.7e-10 70.5 253 26.1
Gohir.D13G019101 Gossypium hirsutum HOM05D000538 ORTHO05D000614 2.7e-10 70.5 257 28.4
Gohir.D01G028300 Gossypium hirsutum HOM05D000538 ORTHO05D000614 3.6e-10 70.1 150 32.7
Sed0002193 Sechium edule HOM05D000538 ORTHO05D000614 3.6e-10 70.1 263 27.0
Gorai.013G021200 Gossypium raimondii HOM05D000538 ORTHO05D000614 4.7e-10 69.7 257 27.6
SGA_v2.0_scaffold62G21365 Striga asiatica HOM05D000538 ORTHO05D000614 4.7e-10 69.7 190 30.5
TAR629G2738 Trochodendron aralioides HOM05D000538 ORTHO05D000614 4.7e-10 69.7 202 27.7
VMungo0540G1345 Vigna mungo HOM05D000538 ORTHO05D000614 6.1e-10 69.3 219 26.5
CAN.G857.7 Capsicum annuum HOM05D000538 ORTHO05D000614 1.0e-09 68.6 81 45.7
Phvul.006G196300 Phaseolus vulgaris HOM05D000538 ORTHO05D000614 1.0e-09 68.6 219 26.9
QL08p034081 Quercus lobata HOM05D000538 ORTHO05D000614 1.0e-09 68.6 226 31.4
TWI38G2228 Tripterygium wilfordii HOM05D000538 ORTHO05D000614 1.0e-09 68.6 68 51.5
CSS0022087 Camellia sinensis var. sinensis HOM05D000538 ORTHO05D000614 1.4e-09 68.2 211 27.0
TAR627G0243 Trochodendron aralioides HOM05D000538 ORTHO05D000614 1.4e-09 68.2 237 26.2
CANSAT64G0769 Cannabis sativa HOM05D000538 ORTHO05D000614 1.8e-09 67.8 199 26.1
Dinv18544 Davidia involucrata HOM05D000538 ORTHO05D000614 1.8e-09 67.8 220 28.6
Rhsim13G0162300 Rhododendron simsii HOM05D000538 ORTHO05D000614 1.8e-09 67.8 255 25.9
CsaV3_7G003860 Cucumis sativus L. HOM05D000538 ORTHO05D000614 2.3e-09 67.4 182 26.4
Nn1g03728 Nelumbo nucifera HOM05D000538 ORTHO05D000614 2.3e-09 67.4 201 27.4
SGA_v2.0_scaffold20G09190 Striga asiatica HOM05D000538 ORTHO05D000614 2.3e-09 67.4 116 49.1
MSTRG.14159 Avicennia marina HOM05D000538 ORTHO05D000614 4.0e-09 66.6 191 28.8
Lj2C275T5 Lonicera japonica HOM05D000538 ORTHO05D000614 4.0e-09 66.6 146 33.6
Lj2g0017985 Lotus japonicus HOM05D000538 ORTHO05D000614 4.0e-09 66.6 185 31.9
CsaV3_6G049420 Cucumis sativus L. HOM05D000538 ORTHO05D000614 5.2e-09 66.2 260 26.9
FvH4_3g02930 Fragaria vesca HOM05D000538 ORTHO05D000614 6.7e-09 65.9 81 43.2
FAN21G1131 Fragaria x ananassa HOM05D000538 ORTHO05D000614 6.7e-09 65.9 81 42.0
FAN25G1625 Fragaria x ananassa HOM05D000538 ORTHO05D000614 6.7e-09 65.9 81 42.0
unitig_8.g3763 Utricularia gibba HOM05D000538 ORTHO05D000614 6.7e-09 65.9 256 28.5
Actinidia24277 Actinidia chinensis HOM05D000538 ORTHO05D000614 8.8e-09 65.5 128 34.4
CANSAT54G1163 Cannabis sativa HOM05D000538 ORTHO05D000614 8.8e-09 65.5 203 29.1
Ciclev10015528m.g Citrus clementina HOM05D000538 ORTHO05D000614 8.8e-09 65.5 82 40.2
Dinv10905 Davidia involucrata HOM05D000538 ORTHO05D000614 8.8e-09 65.5 217 24.4
QL93p0073_1288 Quercus lobata HOM05D000538 ORTHO05D000614 8.8e-09 65.5 130 33.8
Sed0014375 Sechium edule HOM05D000538 ORTHO05D000614 8.8e-09 65.5 278 25.2
Actinidia26954 Actinidia chinensis HOM05D000538 ORTHO05D000614 1.2e-08 65.1 80 38.8
Lalb_Chr16g0392201 Lupinus albus HOM05D000538 ORTHO05D000614 1.5e-08 64.7 195 26.7
MD05G1335900 Malus domestica HOM05D000538 ORTHO05D000614 2.6e-08 63.9 278 25.5
Actinidia36906 Actinidia chinensis HOM05D004209 ORTHO05D004970 3.3e-08 63.5 179 27.9
MELO3C018793.2 Cucumis melo HOM05D000538 ORTHO05D000614 3.3e-08 63.5 258 24.4
Dinv18944 Davidia involucrata HOM05D000538 ORTHO05D000614 3.3e-08 63.5 256 25.4
Prupe.3G222100 Prunus persica HOM05D000538 ORTHO05D000614 3.3e-08 63.5 200 27.0
COL.COLO4_13007 Corchorus olitorius HOM05D000538 ORTHO05D000614 5.7e-08 62.8 72 38.9
RcHm_v2.0_Chr2g0160351 Rosa chinensis HOM05D000538 ORTHO05D000614 5.7e-08 62.8 264 26.1
vmacro12238 Vaccinium macrocarpon HOM05D000538 ORTHO05D000614 5.7e-08 62.8 230 25.7
Sed0007057 Sechium edule HOM05D000538 ORTHO05D000614 7.5e-08 62.4 252 25.0
CiPaw.04G118800 Carya illinoinensis HOM05D000538 ORTHO05D000614 9.7e-08 62.0 81 40.7
CiPaw.09G080200 Carya illinoinensis HOM05D000538 ORTHO05D000614 9.7e-08 62.0 129 34.1
CDE05G1513 Ceratophyllum demersum HOM05D000538 ORTHO05D000614 9.7e-08 62.0 210 23.8
Gohir.D10G203100 Gossypium hirsutum HOM05D000538 ORTHO05D000614 9.7e-08 62.0 253 24.1
Gorai.011G228000 Gossypium raimondii HOM05D000538 ORTHO05D000614 9.7e-08 62.0 253 24.1
Manes.16G016900 Manihot esculenta HOM05D000538 ORTHO05D000614 1.3e-07 61.6 130 29.2
Rhsim11G0019400 Rhododendron simsii HOM05D000538 ORTHO05D000614 1.3e-07 61.6 231 27.7
unitig_0.g2465 Utricularia gibba HOM05D000538 ORTHO05D000614 1.3e-07 61.6 236 28.0
FAN21G0633 Fragaria x ananassa HOM05D000538 ORTHO05D000614 1.7e-07 61.2 141 33.3
ClCG01G022290 Citrullus lanatus HOM05D000538 ORTHO05D000614 2.2e-07 60.8 146 30.8
Gohir.A10G196200 Gossypium hirsutum HOM05D000538 ORTHO05D000614 2.2e-07 60.8 253 24.9
GSVIVG01002745001 Vitis vinifera HOM05D000538 ORTHO05D000614 2.2e-07 60.8 74 41.9
Manes.07G017600 Manihot esculenta HOM05D000538 ORTHO05D000614 2.8e-07 60.5 162 30.2
THA.LOC104805998 Tarenaya hassleriana HOM05D000538 ORTHO05D000614 2.8e-07 60.5 126 34.1
ECA248G3523 Erigeron canadensis HOM05D000538 ORTHO05D000614 3.7e-07 60.1 146 30.1
Lalb_Chr20g0122641 Lupinus albus HOM05D000538 ORTHO05D000614 3.7e-07 60.1 201 25.9
Haze_06686 Corylus avellana HOM05D000538 ORTHO05D000614 4.8e-07 59.7 72 44.4
Prupe.4G029400 Prunus persica HOM05D000538 ORTHO05D000614 4.8e-07 59.7 240 25.4
Sabra11G0087800 Salix brachista HOM05D000538 ORTHO05D000614 4.8e-07 59.7 227 24.7
Dinv15618 Davidia involucrata HOM05D000538 ORTHO05D000614 6.3e-07 59.3 82 41.5
Cfa016408 Carpinus fangiana HOM05D000538 ORTHO05D000614 8.2e-07 58.9 72 43.1
Hma1.2p1_0613F.1_g189370 Hydrangea macrophylla HOM05D000538 ORTHO05D000614 8.2e-07 58.9 257 24.9
Nn4g26474 Nelumbo nucifera HOM05D000538 ORTHO05D000614 8.2e-07 58.9 204 24.5
Sc21g0001810 Simmondsia chinensis HOM05D000538 ORTHO05D000614 8.2e-07 58.9 248 26.6
Duzib248G0414 Durio zibethinus HOM05D000538 ORTHO05D000614 1.1e-06 58.5 220 22.7
Rhsim06G0156300 Rhododendron simsii HOM05D000538 ORTHO05D000614 1.1e-06 58.5 278 25.9
Rhsim06G0156400 Rhododendron simsii HOM05D008818 ORTHO05D010237 1.1e-06 58.5 61 47.5
DCAR_007866 Daucus carota HOM05D000538 ORTHO05D000614 1.4e-06 58.2 69 39.1
Ciclev10011975m.g Citrus clementina HOM05D000538 ORTHO05D000614 1.8e-06 57.8 69 46.4
DCAR_029727 Daucus carota HOM05D000538 ORTHO05D000614 1.8e-06 57.8 83 36.1
Glyma.13G251000 Glycine max HOM05D000538 ORTHO05D000614 1.8e-06 57.8 89 34.8
Hma1.2p1_0439F.1_g153220 Hydrangea macrophylla HOM05D000538 ORTHO05D000614 1.8e-06 57.8 242 24.4
SGA_v2.0_scaffold90G27740 Striga asiatica HOM05D000538 ORTHO05D000614 1.8e-06 57.8 74 39.2
VMungo0540G0362 Vigna mungo HOM05D000538 ORTHO05D011169 1.8e-06 57.8 159 25.8
RcHm_v2.0_Chr5g0004541 Rosa chinensis HOM05D000538 ORTHO05D000614 2.4e-06 57.4 105 36.2
Lj6g0024738 Lotus japonicus HOM05D000538 ORTHO05D000614 3.1e-06 57.0 63 39.7
SalBow3G2906 Salvia bowleyana HOM05D000538 ORTHO05D000614 3.1e-06 57.0 74 39.2
THA.LOC104809520 Tarenaya hassleriana HOM05D000538 ORTHO05D000614 3.1e-06 57.0 66 37.9
AT1G11510 Arabidopsis thaliana HOM05D000538 ORTHO05D000614 4.1e-06 56.6 181 27.1
SalBow1G6852 Salvia bowleyana HOM05D000538 ORTHO05D000614 4.1e-06 56.6 180 26.1
BolC1t05721H Brassica oleracea HOM05D000538 ORTHO05D000614 5.3e-06 56.2 97 34.0
MBI18_g24145_MAGBIO Magnolia biondii HOM05D000538 ORTHO05D000614 5.3e-06 56.2 70 41.4
Rhsim05G0159700 Rhododendron simsii HOM05D000538 ORTHO05D000614 5.3e-06 56.2 61 45.9
Sabra16G0183500 Salix brachista HOM05D000538 ORTHO05D000614 5.3e-06 56.2 240 24.2
SGA_v2.0_scaffold25G10730 Striga asiatica HOM05D000538 ORTHO05D000614 5.3e-06 56.2 74 37.8
CAN.G157.14 Capsicum annuum HOM05D000538 ORTHO05D000614 7.0e-06 55.8 106 33.0
CDE05G1406 Ceratophyllum demersum HOM05D000538 ORTHO05D000614 7.0e-06 55.8 66 42.4
Cc02_g31480 Coffea canephora HOM05D000538 ORTHO05D000614 7.0e-06 55.8 71 39.4
FAN09G4736 Fragaria x ananassa HOM05D000538 ORTHO05D000614 7.0e-06 55.8 73 39.7
Glyma.05G088300 Glycine max HOM05D000538 ORTHO05D000614 7.0e-06 55.8 183 25.1
CsaV3_2G004350 Cucumis sativus L. HOM05D000538 ORTHO05D000614 9.1e-06 55.5 62 45.2
MBI02_g02477_MAGBIO Magnolia biondii HOM05D000538 ORTHO05D000614 9.1e-06 55.5 66 42.4
Manes.17G030100 Manihot esculenta HOM05D000538 ORTHO05D000614 9.1e-06 55.5 146 26.7


User provided reference genes

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