Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold528G52733 Striga asiatica HOM05D001668 ORTHO05D051405 1.4e-57 226.1 117 100.0
SGA_v2.0_scaffold6G03335 Striga asiatica HOM05D002212 ORTHO05D051405 4.4e-51 204.5 115 92.2
SGA_v2.0_scaffold63G21657 Striga asiatica HOM05D001668 ORTHO05D001693 1.9e-09 66.2 56 64.3
SGA_v2.0_scaffold389G50574 Striga asiatica HOM05D001668 ORTHO05D001693 1.2e-08 63.5 48 68.8
unitig_22.g5548 Utricularia gibba HOM05D001668 ORTHO05D001693 1.2e-08 63.5 57 52.6
Migut.E00097 Erythranthe guttata HOM05D001668 ORTHO05D001693 1.6e-08 63.2 57 56.1
SalBow8G1549 Salvia bowleyana HOM05D001668 ORTHO05D001693 2.7e-08 62.4 84 46.4
Oeu001573.1 Olea europaea HOM05D001668 ORTHO05D001693 4.6e-08 61.6 59 50.8
Hund25249 Selenicereus undatus HOM05D001668 ORTHO05D001693 7.8e-08 60.8 58 55.2
EL10Ac6g13194 Beta vulgaris HOM05D001668 ORTHO05D001693 1.3e-07 60.1 76 46.1
Oeu014030.1 Olea europaea HOM05D001668 ORTHO05D001693 1.3e-07 60.1 46 60.9
CAN.G58.34 Capsicum annuum HOM05D001668 ORTHO05D001693 2.3e-07 59.3 75 44.0
MSTRG.13419 Avicennia marina HOM05D001668 ORTHO05D001693 3.0e-07 58.9 48 58.3
MSTRG.2347 Avicennia marina HOM05D001668 ORTHO05D001693 3.0e-07 58.9 48 62.5
Cc11_g13090 Coffea canephora HOM05D001668 ORTHO05D001693 3.0e-07 58.9 51 54.9
MD13G1072900 Malus domestica HOM05D001668 ORTHO05D001693 3.0e-07 58.9 64 46.9
Prupe.1G273200 Prunus persica HOM05D001668 ORTHO05D001693 3.9e-07 58.5 64 43.8
Nitab4.5_0002635g0010 Nicotiana tabacum HOM05D001668 ORTHO05D001693 8.6e-07 57.4 51 52.9
RcHm_v2.0_Chr4g0439941 Rosa chinensis HOM05D001668 ORTHO05D001693 8.6e-07 57.4 64 46.9
unitig_8.g3951 Utricularia gibba HOM05D001668 ORTHO05D001693 8.6e-07 57.4 51 54.9
Migut.L01303 Erythranthe guttata HOM05D001668 ORTHO05D001693 1.1e-06 57.0 51 52.9
FAN07G1510 Fragaria x ananassa HOM05D004641 ORTHO05D005871 1.1e-06 57.0 64 48.4
FAN12G2116 Fragaria x ananassa HOM05D001668 ORTHO05D005871 1.1e-06 57.0 84 39.3
FAN17G1439 Fragaria x ananassa HOM05D001668 ORTHO05D001693 1.1e-06 57.0 64 48.4
Nn3g17220 Nelumbo nucifera HOM05D001668 ORTHO05D001693 1.1e-06 57.0 57 50.9
Nitab4.5_0000141g0140 Nicotiana tabacum HOM05D001668 ORTHO05D001693 1.1e-06 57.0 51 51.0
Nitab4.5_0000703g0110 Nicotiana tabacum HOM05D001668 ORTHO05D001693 1.1e-06 57.0 70 45.7
Nitab4.5_0013609g0010 Nicotiana tabacum HOM05D001668 ORTHO05D001693 1.1e-06 57.0 70 45.7
CAN.G38.14 Capsicum annuum HOM05D001668 ORTHO05D001693 1.5e-06 56.6 51 51.0
FvH4_4g31451 Fragaria vesca HOM05D001668 ORTHO05D001693 1.5e-06 56.6 71 43.7
FAN22G0211 Fragaria x ananassa HOM05D001668 ORTHO05D001693 1.5e-06 56.6 64 46.9
Hund05885 Selenicereus undatus HOM05D001668 ORTHO05D001693 1.5e-06 56.6 61 45.9
Lj6A788T58 Lonicera japonica HOM05D001668 ORTHO05D001693 1.9e-06 56.2 48 60.4
AUR62028789 Chenopodium quinoa HOM05D001668 ORTHO05D001693 2.5e-06 55.8 70 47.1
Sc11g0001870 Simmondsia chinensis HOM05D001668 ORTHO05D001693 2.5e-06 55.8 56 51.8
PGSC0003DMG400006556 Solanum tuberosum HOM05D001668 ORTHO05D001693 2.5e-06 55.8 74 39.2
TPR.G37024 Trifolium pratense HOM05D001668 ORTHO05D001693 2.5e-06 55.8 51 52.9
Aqoxy3G03362 Aquilegia oxysepala HOM05D001668 ORTHO05D001693 3.3e-06 55.5 56 50.0
Psat2g121040 Pisum sativum HOM05D001668 ORTHO05D001693 3.3e-06 55.5 43 62.8
Solyc05g007460.3 Solanum lycopersicum HOM05D001668 ORTHO05D001693 3.3e-06 55.5 48 52.1
Sopen05g003340 Solanum pennellii HOM05D001668 ORTHO05D001693 3.3e-06 55.5 48 52.1
HanXRQChr12g0362571 Helianthus annuus HOM05D001668 ORTHO05D001693 4.3e-06 55.1 106 33.0
Solyc01g010860.3 Solanum lycopersicum HOM05D001668 ORTHO05D001693 4.3e-06 55.1 51 49.0
Sopen01g006680 Solanum pennellii HOM05D001668 ORTHO05D001693 4.3e-06 55.1 51 49.0
Ca_04787_v3 Cicer arietinum L. HOM05D001668 ORTHO05D001693 5.6e-06 54.7 43 60.5
MD16G1073700 Malus domestica HOM05D001668 ORTHO05D001693 5.6e-06 54.7 64 45.3
Peaxi162Scf00026g03212 Petunia axillaris HOM05D001668 ORTHO05D001693 5.6e-06 54.7 61 47.5
Sc04g0008240 Simmondsia chinensis HOM05D001668 ORTHO05D001693 5.6e-06 54.7 62 46.8
Ah.03g135160 Amaranthus hybridus HOM05D001668 ORTHO05D001693 7.3e-06 54.3 52 51.9
PGSC0003DMG401025549 Solanum tuberosum HOM05D001668 ORTHO05D001693 7.3e-06 54.3 45 53.3
Zm00001eb169810 Zea mays HOM05D001668 ORTHO05D001693 7.3e-06 54.3 54 50.0
Cfa008991 Carpinus fangiana HOM05D001668 ORTHO05D001693 9.5e-06 53.9 58 46.6
AUR62005768 Chenopodium quinoa HOM05D001668 ORTHO05D001693 9.5e-06 53.9 70 45.7
Cc10_g06330 Coffea canephora HOM05D001668 ORTHO05D001693 9.5e-06 53.9 73 46.6
Medtr5g040320 Medicago truncatula HOM05D001668 ORTHO05D001693 9.5e-06 53.9 43 60.5
Peaxi162Scf00541g00526 Petunia axillaris HOM05D001668 ORTHO05D001693 9.5e-06 53.9 44 54.5
QL03p064359 Quercus lobata HOM05D001668 ORTHO05D001693 9.5e-06 53.9 58 50.0


User provided reference genes

Program Settings