Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold4G02415 Striga asiatica HOM05D004116 ORTHO05D004734 0.0e+00 2038.8 1041 100.0
SGA_v2.0_scaffold413G51160 Striga asiatica HOM05D004116 ORTHO05D004734 0.0e+00 1786.5 1042 89.1
Migut.H00657 Erythranthe guttata HOM05D004116 ORTHO05D004734 0.0e+00 1723.8 1043 85.1
MSTRG.23904 Avicennia marina HOM05D004116 ORTHO05D004734 0.0e+00 1721.4 1043 84.2
CAN.G206.195 Capsicum annuum HOM05D004116 ORTHO05D004734 0.0e+00 1691.8 1043 82.5
Cc07_g03830 Coffea canephora HOM05D004116 ORTHO05D004734 0.0e+00 1679.8 1042 82.6
Oeu045355.1 Olea europaea HOM05D004116 ORTHO05D004734 0.0e+00 1678.3 1043 82.5
Dinv11490 Davidia involucrata HOM05D004116 ORTHO05D004734 0.0e+00 1673.3 1044 81.6
Sopen02g033270 Solanum pennellii HOM05D004116 ORTHO05D004734 0.0e+00 1672.1 1044 81.5
PGSC0003DMG400001440 Solanum tuberosum HOM05D004116 ORTHO05D004734 0.0e+00 1666.4 1044 81.4
Dinv33806 Davidia involucrata HOM05D004116 ORTHO05D004734 0.0e+00 1656.7 1037 81.2
Actinidia26244 Actinidia chinensis HOM05D004116 ORTHO05D004734 0.0e+00 1656.0 1018 82.3
Hma1.2p1_0037F.1_g023840 Hydrangea macrophylla HOM05D004116 ORTHO05D004734 0.0e+00 1650.6 1044 81.1
Lj4C115G25 Lonicera japonica HOM05D004116 ORTHO05D004734 0.0e+00 1648.6 1045 80.8
vmacro18164 Vaccinium macrocarpon HOM05D004116 ORTHO05D004734 0.0e+00 1643.2 1019 81.9
Nitab4.5_0000565g0080 Nicotiana tabacum HOM05D004116 ORTHO05D004734 0.0e+00 1641.3 1078 78.6
DCAR_011063 Daucus carota HOM05D004116 ORTHO05D004734 0.0e+00 1629.8 1047 78.9
Peaxi162Scf00166g00825 Petunia axillaris HOM05D004116 ORTHO05D004734 0.0e+00 1629.8 1043 79.5
Haze_14475 Corylus avellana HOM05D004116 ORTHO05D004734 0.0e+00 1624.8 1051 79.4
Prupe.3G259400 Prunus persica HOM05D004116 ORTHO05D004734 0.0e+00 1622.4 1043 79.5
MELO3C009839.2 Cucumis melo HOM05D004116 ORTHO05D004734 0.0e+00 1620.9 1047 78.9
CsaV3_3G041070 Cucumis sativus L. HOM05D004116 ORTHO05D004734 0.0e+00 1618.2 1047 78.9
TAR629G1084 Trochodendron aralioides HOM05D004116 ORTHO05D004734 0.0e+00 1614.4 1035 79.4
Lju41A7G39 Lonicera japonica HOM05D004116 ORTHO05D004734 0.0e+00 1614.0 1062 78.9
MD17G1056200 Malus domestica HOM05D004116 ORTHO05D004734 0.0e+00 1613.2 1044 79.3
CSS0030715 Camellia sinensis var. sinensis HOM05D004116 ORTHO05D004734 0.0e+00 1609.0 1018 80.4
Atru.chr8.371 Acer truncatum HOM05D004116 ORTHO05D004734 0.0e+00 1607.8 1048 78.6
ClCG10G015430 Citrullus lanatus HOM05D004116 ORTHO05D004734 0.0e+00 1604.7 1046 78.6
Rhsim08G0073200 Rhododendron simsii HOM05D004116 ORTHO05D004734 0.0e+00 1604.0 1074 76.5
Nitab4.5_0008573g0070 Nicotiana tabacum HOM05D004116 ORTHO05D004734 0.0e+00 1603.6 1079 76.7
Sed0005067 Sechium edule HOM05D004116 ORTHO05D004734 0.0e+00 1599.3 1043 78.1
PGR004G0109 Punica granatum HOM05D004116 ORTHO05D004734 0.0e+00 1596.6 1047 78.2
CiPaw.03G091800 Carya illinoinensis HOM05D004116 ORTHO05D004734 0.0e+00 1595.5 1048 77.5
Ciclev10010958m.g Citrus clementina HOM05D004116 ORTHO05D004734 0.0e+00 1593.9 1053 77.3
QL02p039609 Quercus lobata HOM05D004116 ORTHO05D004734 0.0e+00 1592.0 1044 78.1
QL02p039361 Quercus lobata HOM05D004116 ORTHO05D004734 0.0e+00 1591.6 1044 78.1
Manes.01G099400 Manihot esculenta HOM05D004116 ORTHO05D004734 0.0e+00 1589.7 1043 77.7
Sc10g0003320 Simmondsia chinensis HOM05D004116 ORTHO05D004734 0.0e+00 1586.2 1056 77.9
Gorai.006G012900 Gossypium raimondii HOM05D004116 ORTHO05D004734 0.0e+00 1583.2 1062 77.2
GSVIVG01011484001 Vitis vinifera HOM05D004116 ORTHO05D004734 0.0e+00 1580.8 1036 78.9
Gohir.D09G011100 Gossypium hirsutum HOM05D004116 ORTHO05D004734 0.0e+00 1578.1 1062 77.0
Duzib264G1228 Durio zibethinus HOM05D004116 ORTHO05D004734 0.0e+00 1576.2 1056 77.0
MD09G1060800 Malus domestica HOM05D004116 ORTHO05D004734 0.0e+00 1572.0 1063 77.0
TWI60G1537 Tripterygium wilfordii HOM05D004116 ORTHO05D004734 0.0e+00 1566.2 1035 76.4
TWI34G1118 Tripterygium wilfordii HOM05D004116 ORTHO05D004734 0.0e+00 1564.7 1035 76.4
HanXRQChr09g0264141 Helianthus annuus HOM05D004116 ORTHO05D004734 0.0e+00 1558.5 1042 76.7
Lsat_1_v5_gn_4_170201 Lactuca sativa HOM05D004116 ORTHO05D004734 0.0e+00 1557.0 1042 76.2
arahy.Tifrunner.gnm1.ann1.M1DWNQ Arachis hypogaea HOM05D004116 ORTHO05D004734 0.0e+00 1555.0 1064 75.6
Eucgr.I01989 Eucalyptus grandis HOM05D004116 ORTHO05D004734 0.0e+00 1553.9 1044 76.4
Thecc.04G090300 Theobroma cacao HOM05D004116 ORTHO05D004734 0.0e+00 1550.4 1056 75.9
VMungo0464G1725 Vigna mungo HOM05D004116 ORTHO05D004734 0.0e+00 1549.6 1052 76.0
HanXRQChr15g0488441 Helianthus annuus HOM05D004116 ORTHO05D004734 0.0e+00 1548.5 1043 76.6
Duzib147G0424 Durio zibethinus HOM05D004116 ORTHO05D004734 0.0e+00 1547.3 1054 75.8
Phvul.004G033100 Phaseolus vulgaris HOM05D004116 ORTHO05D004734 0.0e+00 1545.4 1052 76.0
PGSC0003DMG400007132 Solanum tuberosum HOM05D004116 ORTHO05D004734 0.0e+00 1544.3 1017 77.3
Glyma.13G059200 Glycine max HOM05D004116 ORTHO05D004734 0.0e+00 1543.5 1050 75.7
Lalb_Chr21g0318471 Lupinus albus HOM05D004116 ORTHO05D004734 0.0e+00 1540.8 1051 75.5
Glyma.19G027200 Glycine max HOM05D004116 ORTHO05D004734 0.0e+00 1538.9 1048 76.0
TPR.G26216 Trifolium pratense HOM05D004116 ORTHO05D004734 0.0e+00 1537.3 1053 75.3
Aa31LG11G14160 Aethionema arabicum HOM05D004116 ORTHO05D004734 0.0e+00 1535.4 1056 75.0
Cfa007620 Carpinus fangiana HOM05D004116 ORTHO05D004734 0.0e+00 1534.6 1051 76.1
BraA02t05272Z Brassica rapa HOM05D004116 ORTHO05D004734 0.0e+00 1533.5 1051 75.4
RcHm_v2.0_Chr2g0166651 Rosa chinensis HOM05D004116 ORTHO05D004734 0.0e+00 1532.3 1052 75.3
CANSAT64G2358 Cannabis sativa HOM05D004116 ORTHO05D004734 0.0e+00 1530.4 1045 75.4
THA.LOC104822346 Tarenaya hassleriana HOM05D004116 ORTHO05D004734 0.0e+00 1528.8 1019 76.8
A02p03010 Brassica napus HOM05D004116 ORTHO05D004734 0.0e+00 1528.1 1054 75.0
Nn4g23336 Nelumbo nucifera HOM05D004116 ORTHO05D004734 0.0e+00 1527.7 1027 76.3
Potri.017G089600 Populus trichocarpa HOM05D004116 ORTHO05D004734 0.0e+00 1522.3 1044 75.0
AT5G15400 Arabidopsis thaliana HOM05D004116 ORTHO05D004734 0.0e+00 1521.1 1057 74.3
AL6G26260 Arabidopsis lyrata HOM05D004116 ORTHO05D004734 0.0e+00 1520.8 1052 74.2
Carub.0006s1357 Capsella rubella HOM05D004116 ORTHO05D004734 0.0e+00 1520.0 1052 74.3
CARHR197910 Cardamine hirsuta HOM05D004116 ORTHO05D004734 0.0e+00 1520.0 1051 74.5
Ca_04866_v3 Cicer arietinum L. HOM05D004116 ORTHO05D004734 0.0e+00 1519.6 1036 74.7
COL.COLO4_07430 Corchorus olitorius HOM05D004116 ORTHO05D004734 0.0e+00 1519.6 1055 74.9
Thhalv10012542m.g Eutrema salsugineum HOM05D004116 ORTHO05D004734 0.0e+00 1517.7 1052 74.5
Potri.004G121200 Populus trichocarpa HOM05D004116 ORTHO05D004734 0.0e+00 1516.9 1045 74.6
Sp6g28690 Schrenkiella parvula HOM05D004116 ORTHO05D004734 0.0e+00 1513.8 1052 74.3
Lj2g0025037 Lotus japonicus HOM05D004116 ORTHO05D004734 0.0e+00 1509.6 1049 74.1
C02p07680 Brassica napus HOM05D004116 ORTHO05D004734 0.0e+00 1506.9 1058 74.3
BolC2t06699H Brassica oleracea HOM05D004116 ORTHO05D004734 0.0e+00 1505.0 1058 74.2
PSO063G3309 Papaver somniferum HOM05D004116 ORTHO05D004734 0.0e+00 1503.0 1031 74.7
C09p61720 Brassica napus HOM05D004116 ORTHO05D004734 0.0e+00 1502.6 1054 74.1
A10p23490 Brassica napus HOM05D004116 ORTHO05D004734 0.0e+00 1501.5 1057 73.7
BraA10t44416Z Brassica rapa HOM05D004116 ORTHO05D004734 0.0e+00 1501.5 1057 73.7
EL10Ac2g03047 Beta vulgaris HOM05D004116 ORTHO05D004734 0.0e+00 1501.1 1153 69.0
BolC9t59011H Brassica oleracea HOM05D004116 ORTHO05D004734 0.0e+00 1500.0 1054 73.9
FvH4_6g47550 Fragaria vesca HOM05D004116 ORTHO05D004734 0.0e+00 1498.8 1051 74.2
FAN09G3106 Fragaria x ananassa HOM05D004116 ORTHO05D004734 0.0e+00 1498.4 1053 74.4
FAN14G3940 Fragaria x ananassa HOM05D004116 ORTHO05D004734 0.0e+00 1497.6 1051 74.1
BcaC03g13414 Brassica carinata HOM05D004116 ORTHO05D004734 0.0e+00 1497.3 1056 74.1
Medtr6g013690 Medicago truncatula HOM05D004116 ORTHO05D004734 0.0e+00 1497.3 1058 72.9
PSO013G0369 Papaver somniferum HOM05D004116 ORTHO05D004734 0.0e+00 1495.7 1031 74.4
Sopen06g031210 Solanum pennellii HOM05D004116 ORTHO05D004734 0.0e+00 1491.1 1017 74.5
arahy.Tifrunner.gnm1.ann1.JWLU7F Arachis hypogaea HOM05D004116 ORTHO05D004734 0.0e+00 1490.7 1053 73.9
Gohir.A09G012200 Gossypium hirsutum HOM05D004116 ORTHO05D004734 0.0e+00 1489.6 1056 73.7
Aqoxy3G03559 Aquilegia oxysepala HOM05D004116 ORTHO05D004734 0.0e+00 1481.5 1020 73.7
FAN02G1010 Fragaria x ananassa HOM05D004116 ORTHO05D004734 0.0e+00 1478.4 1095 71.4
Sabra17G0078900 Salix brachista HOM05D004116 ORTHO05D004734 0.0e+00 1478.4 1061 72.2
FAN05G0837 Fragaria x ananassa HOM05D004116 ORTHO05D004734 0.0e+00 1472.2 1093 71.5
unitig_744.g24002 Utricularia gibba HOM05D004116 ORTHO05D004734 0.0e+00 1468.0 1042 74.1
MBI19_g32361_MAGBIO Magnolia biondii HOM05D004116 ORTHO05D004734 0.0e+00 1447.6 1058 71.5
Aqoxy3G01362 Aquilegia oxysepala HOM05D004116 ORTHO05D004734 0.0e+00 1412.9 1024 70.4
ECA232G0495 Erigeron canadensis HOM05D004116 ORTHO05D004734 0.0e+00 1376.3 934 74.8
AUR62018140 Chenopodium quinoa HOM05D004116 ORTHO05D004734 0.0e+00 1372.5 1043 69.3
Solyc06g074770.4 Solanum lycopersicum HOM05D004116 ORTHO05D004734 0.0e+00 1365.5 957 72.8
Cpa.g.sc14.139 Carica papaya HOM05D004116 ORTHO05D004734 0.0e+00 1346.3 1049 69.2
HPP92_023626 Vanilla planifolia HOM05D004116 ORTHO05D004734 0.0e+00 1334.3 958 70.4
AUR62034478 Chenopodium quinoa HOM05D004116 ORTHO05D004734 0.0e+00 1305.8 1033 67.2
SHI16441 Sapria himalayana HOM05D004116 ORTHO05D004734 0.0e+00 1289.6 1028 65.9
RcHm_v2.0_Chr5g0047221 Rosa chinensis HOM05D004116 ORTHO05D004734 0.0e+00 1287.7 1013 67.1
Os03g0427900 Oryza sativa ssp. japonica HOM05D004116 ORTHO05D004734 0.0e+00 1277.3 1043 63.5
ATR0111G012 Amborella trichopoda HOM05D004116 ORTHO05D004734 0.0e+00 1201.8 825 73.9
Ah.12g062550 Amaranthus hybridus HOM05D004116 ORTHO05D004734 0.0e+00 1081.2 751 75.2
Mapoly0052s0078 Marchantia polymorpha HOM05D004116 ORTHO05D004734 8.5e-311 1070.5 1022 55.8
AagrBONN_evm.TU.Sc2ySwM_340.219 Anthoceros agrestis HOM05D004116 ORTHO05D004734 9.2e-310 1067.0 1012 57.1
Pp3c15_20630 Physcomitrium patens HOM05D004116 ORTHO05D004734 1.6e-298 1029.6 1036 54.4
SMO356G0406 Selaginella moellendorffii HOM05D004116 ORTHO05D004734 1.4e-297 1026.5 1025 53.9
Hma1.2p1_0604F.1_g187770 Hydrangea macrophylla HOM05D004116 ORTHO05D004734 2.5e-291 1005.7 626 83.7
Zm00001eb393280 Zea mays HOM05D004116 ORTHO05D004734 2.9e-287 992.3 711 70.3
Zm00001eb020370 Zea mays HOM05D004116 ORTHO05D004734 4.2e-286 988.4 711 69.9
FAN11G2920 Fragaria x ananassa HOM05D004116 ORTHO05D004734 1.5e-280 969.9 1011 54.0
CDE04G3780 Ceratophyllum demersum HOM05D004116 ORTHO05D004734 7.4e-267 924.5 619 75.8
PSO144G0086 Papaver somniferum HOM05D004116 ORTHO05D004734 6.9e-265 917.9 1035 50.8
FAN25G2854 Fragaria x ananassa HOM05D004116 ORTHO05D004734 2.5e-262 909.4 964 54.6
PSO325G0009 Papaver somniferum HOM05D004116 ORTHO05D004734 6.0e-261 904.8 1028 51.0
PSO170G0544 Papaver somniferum HOM05D004116 ORTHO05D004734 1.9e-259 899.8 1037 50.3
Aqoxy3G00661 Aquilegia oxysepala HOM05D004116 ORTHO05D004734 1.5e-240 837.0 555 75.9
Psat1g069120 Pisum sativum HOM05D004116 ORTHO05D004734 6.7e-236 821.6 476 85.3
Solyc02g088550.4 Solanum lycopersicum HOM05D004116 ORTHO05D004734 3.0e-220 769.6 447 86.8
PSO017G4845 Papaver somniferum HOM05D004116 ORTHO05D004734 8.6e-199 698.4 1029 43.5
FvH4_3g25920 Fragaria vesca HOM05D004116 ORTHO05D004734 2.8e-189 666.8 436 76.4
CDE07G1255 Ceratophyllum demersum HOM05D006464 ORTHO05D007923 1.1e-180 638.3 399 78.7
PSO144G0082 Papaver somniferum HOM05D004116 ORTHO05D004734 2.3e-180 637.1 1018 40.8
BcaC04g24243 Brassica carinata HOM05D004116 ORTHO05D004734 3.9e-175 619.8 386 82.4
CBR_g12108 Chara braunii HOM05D004116 ORTHO05D004734 9.6e-174 615.1 522 60.3
FAN16G3124 Fragaria x ananassa HOM05D004116 ORTHO05D004734 4.7e-173 612.8 480 66.5
PRCOL_00002499 Prasinoderma coloniale HOM05D004116 ORTHO05D004734 9.9e-163 578.6 1010 37.2
Psat1g069040 Pisum sativum HOM05D004116 ORTHO05D004734 1.5e-155 554.7 455 64.2
Aqoxy3G00662 Aquilegia oxysepala HOM05D004116 ORTHO05D004734 1.3e-149 535.0 414 65.5
FAN17G0761 Fragaria x ananassa HOM05D004116 ORTHO05D004734 3.9e-143 513.5 373 70.5
FAN09G1300 Fragaria x ananassa HOM05D004116 ORTHO05D004734 7.4e-142 509.2 367 70.8
FAN09G4205 Fragaria x ananassa HOM05D004116 ORTHO05D004734 7.4e-142 509.2 367 70.8
FAN21G0296 Fragaria x ananassa HOM05D004116 ORTHO05D004734 7.9e-136 489.2 371 69.0
BcaNung03312 Brassica carinata HOM05D004116 ORTHO05D004734 6.7e-135 486.1 509 57.6
SEGI_13711 Sequoiadendron giganteum HOM05D004116 ORTHO05D004734 1.6e-133 481.5 322 74.5
FvH4_3g25930 Fragaria vesca HOM05D004116 ORTHO05D004734 2.4e-124 451.1 566 48.2
PSO384G2573 Papaver somniferum HOM05D004116 ORTHO05D004734 5.5e-121 439.9 583 45.1
Cre09.g398350 Chlamydomonas reinhardtii HOM05D004116 ORTHO05D004734 2.6e-115 421.0 1075 31.1
PSO761G0054 Papaver somniferum HOM05D004116 ORTHO05D004734 5.5e-113 413.3 654 40.4
QL02p039616 Quercus lobata HOM05D004116 ORTHO05D004734 1.0e-103 382.5 283 67.8
Ah.12g062560 Amaranthus hybridus HOM05D004116 ORTHO05D004734 1.8e-103 381.7 292 64.7
Actinidia17574 Actinidia chinensis HOM05D004116 ORTHO05D004734 3.8e-90 337.4 281 64.1
Lsat_1_v5_gn_8_41201 Lactuca sativa HOM05D004116 ORTHO05D004734 2.8e-88 331.3 194 84.5
FAN12G4053 Fragaria x ananassa HOM05D004116 ORTHO05D004734 1.0e-82 312.8 205 77.6
Lsat_1_v5_gn_8_41221 Lactuca sativa HOM05D004116 ORTHO05D004734 2.1e-80 305.1 397 47.4
CBR_g12111 Chara braunii HOM05D004116 ORTHO05D004734 4.0e-79 300.8 519 36.6
PSO478G4129 Papaver somniferum HOM05D004116 ORTHO05D004734 2.2e-69 268.5 415 43.1
Hma1.2p1_1813F.1_g303850 Hydrangea macrophylla HOM05D004116 ORTHO05D004734 9.5e-65 253.1 185 69.7
FAN21G1378 Fragaria x ananassa HOM05D004116 ORTHO05D004734 3.1e-63 248.1 230 60.0
Actinidia17575 Actinidia chinensis HOM05D004116 ORTHO05D004734 4.9e-61 240.7 135 85.2
FAN16G0481 Fragaria x ananassa HOM05D004116 ORTHO05D004734 4.7e-56 224.2 223 57.8
FAN21G1132 Fragaria x ananassa HOM05D004116 ORTHO05D004734 1.3e-53 216.1 303 43.9
Oeu034757.1 Olea europaea HOM05D004116 ORTHO05D004734 1.4e-52 212.6 136 78.7
Lsat_1_v5_gn_0_45261 Lactuca sativa HOM05D004116 ORTHO05D004734 1.7e-50 205.7 162 69.8
Actinidia17576 Actinidia chinensis HOM05D000100 ORTHO05D004702 1.5e-46 192.6 120 78.3
SalBow6G1256 Salvia bowleyana HOM05D003831 ORTHO05D004440 1.5e-46 192.6 204 54.9
MCO05G368 Micromonas commoda HOM05D004116 ORTHO05D004734 1.1e-44 186.4 187 51.3
Psat1g069080 Pisum sativum HOM05D004116 ORTHO05D004734 2.4e-39 168.7 147 63.9
PSO675G1667 Papaver somniferum HOM05D004116 ORTHO05D004734 1.9e-36 159.1 176 54.0
FAN16G0041 Fragaria x ananassa HOM05D004116 ORTHO05D004734 3.1e-31 141.7 121 62.0
TAR622G0429 Trochodendron aralioides HOM05D004116 ORTHO05D004734 3.1e-31 141.7 253 37.9
CAN.G111.24 Capsicum annuum HOM05D004116 ORTHO05D004734 3.5e-27 128.3 261 36.4
CDE04G3166 Ceratophyllum demersum HOM05D006464 ORTHO05D007923 1.1e-25 123.2 88 72.7
AL1G40200 Arabidopsis lyrata HOM05D004116 ORTHO05D004734 5.7e-25 120.9 84 70.2
Lsat_1_v5_gn_1_20041 Lactuca sativa HOM05D004116 ORTHO05D004734 4.8e-16 91.3 68 64.7
Hund13173 Selenicereus undatus HOM05D000214 ORTHO05D000131 1.1e-12 80.1 55 74.5
Cre12.g519150 Chlamydomonas reinhardtii HOM05D004874 ORTHO05D006796 7.2e-12 77.4 73 47.9
MCO16G187 Micromonas commoda HOM05D004874 ORTHO05D006796 6.1e-11 74.3 116 42.2
Lsat_1_v5_gn_8_37500 Lactuca sativa HOM05D003233 ORTHO05D003694 2.3e-10 72.4 49 69.4
MBI19_g01203_MAGBIO Magnolia biondii HOM05D001745 ORTHO05D001772 2.2e-08 65.9 62 56.5


User provided reference genes

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