Gene: AT5G15400

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT5G15400
  • Transcript Identifier AT5G15400.1
  • Gene Type Coding gene
  • Location Chr5 : 4997764-5002907 : negative

Gene Family Information

  • ID HOM05D004116
  • #Genes/#Species 171/98
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT5G15400.1
  • Alias MUSE3,Mutant, snc1 -enhancing 3
  • uniprot Q9LF41

Descriptions

  • Description U-box domain-containing protein
  • Computational description U-box domain-containing protein; FUNCTIONS IN: ubiquitin-protein ligase activity, ubiquitin-ubiquitin ligase activity; INVOLVED IN: protein ubiquitination, ubiquitin-dependent protein catabolic process; LOCATED IN: ubiquitin ligase complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin conjugation factor E4, core (InterPro:IPR019474), U box domain (InterPro:IPR003613); Has 1036 Blast hits to 1011 proteins in 209 species: Archae - 0; Bacteria - 0; Metazoa - 503; Fungi - 218; Plants - 177; Viruses - 0; Other Eukaryotes - 138 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0030433
IEA
GOA Databaseubiquitin-dependent ERAD pathway
GO:0030433
IBA
Gene Ontologyubiquitin-dependent ERAD pathway1
GO:0030433
IEA
InterProubiquitin-dependent ERAD pathway
GO:0016567
IEA
GOA Databaseprotein ubiquitination
GO:0016567
IGI
Gene Ontologyprotein ubiquitination2
GO:0016567
IEA
InterProprotein ubiquitination
GO:0006511
IEA
GOA Databaseubiquitin-dependent protein catabolic process
GO:0006511
IGI
Gene Ontologyubiquitin-dependent protein catabolic process2
GO:0006511
IEA
InterProubiquitin-dependent protein catabolic process
GO:0000209
IBA
Gene Ontologyprotein polyubiquitination1
GO:0031348
IGI
Gene Ontologynegative regulation of defense response2

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0004842
IEA
GOA Databaseubiquitin-protein transferase activity
GO:0004842
IEA
InterProubiquitin-protein transferase activity
GO:0034450
IEA
GOA Databaseubiquitin-ubiquitin ligase activity
GO:0034450
IBA
Gene Ontologyubiquitin-ubiquitin ligase activity1
GO:0034450
IEA
InterProubiquitin-ubiquitin ligase activity
GO:0016740
IEA
GOA Databasetransferase activity
GO:0061630
IGI
Gene Ontologyubiquitin protein ligase activity2

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005737
IEA
GOA Databasecytoplasm
GO:0005737
IDA
ISM, IBA
Gene Ontologycytoplasm1 2
GO:0000151
IEA
Gene Ontologyubiquitin ligase complex
GO:0000151
IEA
InterProubiquitin ligase complex
GO:0005829
IDA
GOA Databasecytosol
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
IDA
IBA
Gene Ontologynucleus1 2

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR019474 Ubiquitin conjugation factor E4, core
IPR045132 Ubiquitin conjugation factor E4
IPR013083 Zinc finger, RING/FYVE/PHD-type
IPR003613 U box domain
Mapman id Description
19.2.4.2.3.1 Protein homeostasis.ubiquitin-proteasome system.membrane-associated protein degradation.ER-associated protein degradation (ERAD).substrate processing.E4 multiubiquitination enzyme (UFD2)