Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold48G18066 Striga asiatica HOM05D004741 ORTHO05D005454 1.6e-196 689.1 321 100.0
Migut.K00575 Erythranthe guttata HOM05D004741 ORTHO05D005454 8.7e-142 507.3 321 76.3
MSTRG.20476 Avicennia marina HOM05D004741 ORTHO05D005454 3.6e-140 501.9 320 74.1
SalBow7G0863 Salvia bowleyana HOM05D004741 ORTHO05D005454 1.1e-136 490.3 320 72.8
SalBow7G1987 Salvia bowleyana HOM05D004741 ORTHO05D005454 2.4e-136 489.2 320 72.8
Oeu016078.1 Olea europaea HOM05D004741 ORTHO05D005454 3.3e-133 478.8 320 70.6
Dinv22023 Davidia involucrata HOM05D004741 ORTHO05D005454 5.8e-130 468.0 320 68.8
unitig_744.g24377 Utricularia gibba HOM05D004741 ORTHO05D005454 7.9e-127 457.6 321 67.3
CSS0005545 Camellia sinensis var. sinensis HOM05D004741 ORTHO05D005454 3.9e-126 455.3 320 67.2
Cc00_g23510 Coffea canephora HOM05D004741 ORTHO05D005454 1.9e-125 453.0 320 65.3
Manes.03G006700 Manihot esculenta HOM05D004741 ORTHO05D005454 3.3e-125 452.2 320 67.2
Lsat_1_v5_gn_6_106561 Lactuca sativa HOM05D004741 ORTHO05D005454 5.6e-125 451.4 321 66.0
Lsat_1_v5_gn_4_135621 Lactuca sativa HOM05D004741 ORTHO05D005454 1.6e-124 449.9 321 65.4
CiPaw.07G232700 Carya illinoinensis HOM05D004741 ORTHO05D005454 3.7e-124 448.7 320 65.3
QL02p018098 Quercus lobata HOM05D004741 ORTHO05D005454 3.7e-124 448.7 320 65.3
GSVIVG01009251001 Vitis vinifera HOM05D004741 ORTHO05D005454 1.4e-123 446.8 320 65.9
ECA246G1320 Erigeron canadensis HOM05D004741 ORTHO05D005454 1.8e-123 446.4 320 66.2
Peaxi162Scf00005g04810 Petunia axillaris HOM05D004741 ORTHO05D005454 1.8e-123 446.4 319 67.4
HanXRQChr10g0277671 Helianthus annuus HOM05D004741 ORTHO05D005454 4.0e-123 445.3 320 65.0
Nn8g39668 Nelumbo nucifera HOM05D004741 ORTHO05D005454 5.3e-123 444.9 320 66.2
Cfa013018 Carpinus fangiana HOM05D004741 ORTHO05D005454 1.2e-122 443.7 320 65.3
Sed0002897 Sechium edule HOM05D004741 ORTHO05D005454 1.5e-122 443.4 320 65.3
TAR625G0772 Trochodendron aralioides HOM05D004741 ORTHO05D005454 7.6e-122 441.0 320 64.7
ClCG08G013810 Citrullus lanatus HOM05D004741 ORTHO05D005454 1.3e-121 440.3 320 65.0
MELO3C011313.2 Cucumis melo HOM05D004741 ORTHO05D005454 1.3e-121 440.3 320 65.0
TWI32G1217 Tripterygium wilfordii HOM05D004741 ORTHO05D005454 1.3e-121 440.3 320 64.7
CAN.G673.1 Capsicum annuum HOM05D004741 ORTHO05D005454 2.5e-120 436.0 320 65.6
CsaV3_2G032600 Cucumis sativus L. HOM05D004741 ORTHO05D005454 2.5e-120 436.0 320 64.4
Eucgr.C04030 Eucalyptus grandis HOM05D004741 ORTHO05D005454 4.2e-120 435.3 320 63.8
Potri.018G015300 Populus trichocarpa HOM05D004741 ORTHO05D005454 4.2e-120 435.3 320 65.6
DCAR_020033 Daucus carota HOM05D004741 ORTHO05D005454 5.5e-120 434.9 320 63.4
RcHm_v2.0_Chr6g0299131 Rosa chinensis HOM05D004741 ORTHO05D005454 7.1e-120 434.5 320 63.8
Sc02g0008350 Simmondsia chinensis HOM05D004741 ORTHO05D005454 7.1e-120 434.5 320 64.4
Solyc07g017640.2 Solanum lycopersicum HOM05D004741 ORTHO05D005454 9.3e-120 434.1 320 65.6
THA.LOC104803607 Tarenaya hassleriana HOM05D004741 ORTHO05D005454 1.2e-119 433.7 320 65.0
Lj4A81G69 Lonicera japonica HOM05D004741 ORTHO05D005454 4.6e-119 431.8 364 58.2
Nitab4.5_0006397g0010 Nicotiana tabacum HOM05D004741 ORTHO05D005454 6.0e-119 431.4 294 70.1
Aqoxy5G01951 Aquilegia oxysepala HOM05D004741 ORTHO05D005454 1.3e-118 430.3 320 64.4
Lalb_Chr08g0244491 Lupinus albus HOM05D004741 ORTHO05D005454 1.8e-118 429.9 320 64.1
Duzib168G2074 Durio zibethinus HOM05D004741 ORTHO05D005454 5.1e-118 428.3 320 63.1
Gohir.D11G176300 Gossypium hirsutum HOM05D004741 ORTHO05D005454 5.1e-118 428.3 320 63.4
vmacro21376 Vaccinium macrocarpon HOM05D004741 ORTHO05D005454 6.7e-118 427.9 368 59.0
Atru.chr7.2571 Acer truncatum HOM05D004741 ORTHO05D005454 8.7e-118 427.6 320 63.8
arahy.Tifrunner.gnm1.ann1.68HE9A Arachis hypogaea HOM05D004741 ORTHO05D005454 8.7e-118 427.6 320 63.4
FvH4_2g41360 Fragaria vesca HOM05D004741 ORTHO05D005454 1.1e-117 427.2 320 63.1
Thecc.09G013800 Theobroma cacao HOM05D004741 ORTHO05D005454 1.5e-117 426.8 320 62.5
FAN15G2922 Fragaria x ananassa HOM05D004741 ORTHO05D005454 1.9e-117 426.4 320 62.8
PSO210G2241 Papaver somniferum HOM05D004741 ORTHO05D005454 1.9e-117 426.4 320 64.4
AUR62035754 Chenopodium quinoa HOM05D004741 ORTHO05D005454 3.3e-117 425.6 322 64.9
Medtr3g105810 Medicago truncatula HOM05D004741 ORTHO05D005454 4.3e-117 425.2 320 64.7
Glyma.04G059700 Glycine max HOM05D004741 ORTHO05D005454 5.6e-117 424.9 320 63.1
arahy.Tifrunner.gnm1.ann1.HM8GSV Arachis hypogaea HOM05D004741 ORTHO05D005454 7.4e-117 424.5 320 62.8
Sopen07g006470 Solanum pennellii HOM05D004741 ORTHO05D005454 2.1e-116 422.9 320 64.7
MD15G1043800 Malus domestica HOM05D004741 ORTHO05D005454 1.4e-115 420.2 320 62.8
ATR0767G225 Amborella trichopoda HOM05D004741 ORTHO05D005454 1.8e-115 419.9 320 60.6
Aa31LG2G18560 Aethionema arabicum HOM05D004741 ORTHO05D005454 4.0e-115 418.7 320 64.1
SGA_v2.0_scaffold443G51691 Striga asiatica HOM05D004741 ORTHO05D005454 4.0e-115 418.7 362 61.0
Sabra18G0018800 Salix brachista HOM05D004741 ORTHO05D005454 5.3e-115 418.3 320 63.8
EL10Ac1g02297 Beta vulgaris HOM05D004741 ORTHO05D005454 6.9e-115 417.9 320 63.1
Psat5g034520 Pisum sativum HOM05D004741 ORTHO05D005454 6.9e-115 417.9 320 63.4
A08p18460 Brassica napus HOM05D004741 ORTHO05D005454 2.0e-114 416.4 321 62.9
PSO761G0470 Papaver somniferum HOM05D004741 ORTHO05D005454 2.0e-114 416.4 320 62.8
Ca_15788_v3 Cicer arietinum L. HOM05D004741 ORTHO05D005454 3.4e-114 415.6 320 62.8
TPR.G1862 Trifolium pratense HOM05D004741 ORTHO05D005454 3.4e-114 415.6 320 61.2
Zm00001eb215780 Zea mays HOM05D004741 ORTHO05D005454 2.9e-113 412.5 320 60.9
BraA08t33808Z Brassica rapa HOM05D004741 ORTHO05D005454 1.4e-112 410.2 321 62.0
COL.COLO4_18967 Corchorus olitorius HOM05D004741 ORTHO05D005454 1.4e-112 410.2 320 62.2
Sp7g29560 Schrenkiella parvula HOM05D004741 ORTHO05D005454 1.9e-112 409.8 320 62.8
Lj1g0020479 Lotus japonicus HOM05D004741 ORTHO05D005454 2.5e-112 409.5 321 61.1
VMungo1309G1293 Vigna mungo HOM05D004741 ORTHO05D005454 3.2e-112 409.1 320 60.6
BcaB03g12718 Brassica carinata HOM05D004741 ORTHO05D005454 5.5e-112 408.3 322 62.4
AT4G31770 Arabidopsis thaliana HOM05D004741 ORTHO05D005454 7.1e-112 407.9 320 63.1
BcaNung01502 Brassica carinata HOM05D004741 ORTHO05D005454 7.1e-112 407.9 320 61.2
PGSC0003DMG400002300 Solanum tuberosum HOM05D004741 ORTHO05D005454 7.1e-112 407.9 290 67.2
BcaNung04120 Brassica carinata HOM05D004741 ORTHO05D005454 1.2e-111 407.1 323 61.3
Thhalv10025305m.g Eutrema salsugineum HOM05D004741 ORTHO05D005454 2.1e-111 406.4 323 61.9
CARHR239670 Cardamine hirsuta HOM05D004741 ORTHO05D005454 2.7e-111 406.0 320 62.2
MBI16_g14670_MAGBIO Magnolia biondii HOM05D004741 ORTHO05D005454 3.5e-111 405.6 320 60.6
A03p60970 Brassica napus HOM05D004741 ORTHO05D005454 7.9e-111 404.4 321 61.4
HPP92_007721 Vanilla planifolia HOM05D004741 ORTHO05D005454 7.9e-111 404.4 320 60.6
CDE06G0415 Ceratophyllum demersum HOM05D004741 ORTHO05D005454 1.3e-110 403.7 320 60.6
AL7G20240 Arabidopsis lyrata HOM05D004741 ORTHO05D005454 1.8e-110 403.3 320 62.5
C07p58870 Brassica napus HOM05D004741 ORTHO05D005454 1.8e-110 403.3 321 61.1
BolC7t46334H Brassica oleracea HOM05D004741 ORTHO05D005454 1.8e-110 403.3 321 61.1
C03p87550 Brassica napus HOM05D004741 ORTHO05D005454 2.3e-110 402.9 322 61.8
BraA03t15138Z Brassica rapa HOM05D004741 ORTHO05D005454 3.0e-110 402.5 321 61.1
Carub.0007s0879 Capsella rubella HOM05D004741 ORTHO05D005454 5.1e-110 401.7 321 61.7
RcHm_v2.0_Chr2g0135121 Rosa chinensis HOM05D004741 ORTHO05D005454 6.7e-110 401.4 326 62.3
BolC3t21075H Brassica oleracea HOM05D004741 ORTHO05D005454 8.7e-110 401.0 322 61.5
Phvul.009G085900 Phaseolus vulgaris HOM05D004741 ORTHO05D005454 1.5e-109 400.2 290 64.1
Atru.BG.288.p Acer truncatum HOM05D004741 ORTHO05D005454 4.1e-107 392.1 319 59.2
Rhsim06G0068400 Rhododendron simsii HOM05D004741 ORTHO05D005454 1.0e-105 387.5 286 65.4
Aqoxy1G00870 Aquilegia oxysepala HOM05D004741 ORTHO05D005454 1.7e-105 386.7 325 59.7
FvH4_6g29560 Fragaria vesca HOM05D004741 ORTHO05D005454 2.2e-105 386.3 328 59.1
Aqoxy4G02579 Aquilegia oxysepala HOM05D004741 ORTHO05D005454 1.4e-104 383.6 325 60.3
FAN14G3005 Fragaria x ananassa HOM05D004741 ORTHO05D005454 7.2e-104 381.3 328 58.8
Cpa.g.sc40.1 Carica papaya HOM05D004741 ORTHO05D005454 4.3e-101 372.1 255 67.1
Mapoly0014s0124 Marchantia polymorpha HOM05D004741 ORTHO05D005454 3.1e-99 365.9 328 56.1
SEGI_18909 Sequoiadendron giganteum HOM05D004741 ORTHO05D005454 4.1e-99 365.5 293 60.4
BcaC01g01061 Brassica carinata HOM05D004741 ORTHO05D005454 1.0e-97 360.9 321 57.6
Hund05236 Selenicereus undatus HOM05D004741 ORTHO05D005454 7.2e-96 354.8 286 59.1
BcaNung01500 Brassica carinata HOM05D004741 ORTHO05D005454 3.0e-94 349.4 309 55.7
Prupe.1G397300 Prunus persica HOM05D004741 ORTHO05D005454 3.0e-94 349.4 287 61.3
SMO284G0001 Selaginella moellendorffii HOM05D004741 ORTHO05D005454 5.0e-89 332.0 322 52.5
Gohir.1Z049533 Gossypium hirsutum HOM05D004741 ORTHO05D005454 8.5e-89 331.3 322 53.7
AUR62033828 Chenopodium quinoa HOM05D004741 ORTHO05D005454 1.9e-88 330.1 320 53.4
SMO145G0212 Selaginella moellendorffii HOM05D004741 ORTHO05D005454 7.2e-88 328.2 322 51.9
Ah.04g152730 Amaranthus hybridus HOM05D004741 ORTHO05D005454 3.6e-87 325.9 281 59.4
Gohir.A02G000200 Gossypium hirsutum HOM05D004741 ORTHO05D005454 2.0e-85 320.1 313 51.8
CBR_g10907 Chara braunii HOM05D004741 ORTHO05D005454 4.4e-85 318.9 359 46.2
MD08G1051300 Malus domestica HOM05D004741 ORTHO05D005454 2.2e-84 316.6 251 62.5
Pp3c24_19510 Physcomitrium patens HOM05D004741 ORTHO05D005454 3.1e-83 312.8 325 50.2
Gohir.A05G415901 Gossypium hirsutum HOM05D004741 ORTHO05D005454 5.3e-83 312.0 204 72.1
Gohir.A11G330400 Gossypium hirsutum HOM05D004741 ORTHO05D005454 2.6e-82 309.7 320 50.0
Gohir.A12G001100 Gossypium hirsutum HOM05D004741 ORTHO05D005454 3.5e-82 309.3 283 56.5
Cre02.g146950 Chlamydomonas reinhardtii HOM05D004741 ORTHO05D005454 2.7e-74 283.1 384 42.7
RcHm_v2.0_Chr1g0357361 Rosa chinensis HOM05D004741 ORTHO05D005454 6.5e-73 278.5 230 58.7
Gohir.A12G000500 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.8e-70 270.4 298 50.0
PRCOL_00004462 Prasinoderma coloniale HOM05D004741 ORTHO05D005454 2.3e-70 270.0 361 42.7
SGA_v2.0_scaffold24G10244 Striga asiatica HOM05D004741 ORTHO05D005454 3.0e-70 269.6 148 84.5
Gohir.A07G233600 Gossypium hirsutum HOM05D004741 ORTHO05D005454 2.4e-67 260.0 336 44.3
Dinv44899 Davidia involucrata HOM05D004741 ORTHO05D005454 5.4e-67 258.8 234 57.3
MCO02G476 Micromonas commoda HOM05D004741 ORTHO05D005454 2.0e-66 256.9 234 50.9
Nitab4.5_0000159g0030 Nicotiana tabacum HOM05D004741 ORTHO05D005454 8.0e-63 245.0 141 80.1
Gohir.1Z049306 Gossypium hirsutum HOM05D004741 ORTHO05D005454 5.2e-54 215.7 140 71.4
Gohir.1Z049408 Gossypium hirsutum HOM05D004741 ORTHO05D005454 5.2e-54 215.7 140 71.4
Gohir.1Z049565 Gossypium hirsutum HOM05D004741 ORTHO05D005454 5.2e-54 215.7 140 71.4
Gohir.A03G000005 Gossypium hirsutum HOM05D004741 ORTHO05D005454 5.2e-54 215.7 140 72.1
Gohir.1Z049424 Gossypium hirsutum HOM05D004741 ORTHO05D005454 5.8e-53 212.2 140 70.7
Gohir.A02G000050 Gossypium hirsutum HOM05D004741 ORTHO05D005454 7.5e-53 211.8 140 70.0
Haze_27111 Corylus avellana HOM05D004741 ORTHO05D005454 1.3e-52 211.1 312 38.8
Gohir.A07G000083 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.4e-51 207.6 153 67.3
Gohir.1Z049489 Gossypium hirsutum HOM05D004741 ORTHO05D005454 4.1e-51 206.1 199 53.8
Gohir.A09G249600 Gossypium hirsutum HOM05D004741 ORTHO05D005454 7.0e-51 205.3 147 66.0
Cfa025655 Carpinus fangiana HOM05D004741 ORTHO05D005454 1.8e-46 190.7 347 36.0
AagrBONN_evm.TU.Sc2ySwM_369.559 Anthoceros agrestis HOM05D004741 ORTHO05D005454 5.2e-46 189.1 222 47.7
BcaB02g11404 Brassica carinata HOM05D004741 ORTHO05D005454 4.4e-45 186.0 117 72.6
MD13G1228500 Malus domestica HOM05D004741 ORTHO05D005454 1.3e-41 174.5 117 68.4
Gohir.A04G148266 Gossypium hirsutum HOM05D004741 ORTHO05D005454 3.1e-38 163.3 200 45.0
Lsat_1_v5_gn_9_90121 Lactuca sativa HOM05D000676 ORTHO05D001458 1.4e-35 154.5 108 63.9
PSO210G0837 Papaver somniferum HOM05D004741 ORTHO05D005454 1.2e-34 151.4 107 62.6
ATR0582G232 Amborella trichopoda HOM05D004741 ORTHO05D005454 6.8e-30 135.6 105 57.1
Gohir.D12G000832 Gossypium hirsutum HOM05D004741 ORTHO05D005454 3.1e-22 110.2 77 67.5
Gohir.A13G000900 Gossypium hirsutum HOM05D004741 ORTHO05D005454 2.2e-20 104.0 75 65.3
Gohir.A12G001050 Gossypium hirsutum HOM05D004741 ORTHO05D005454 3.6e-15 86.7 44 81.8
Sopen07g006070 Solanum pennellii HOM05D004741 ORTHO05D005454 1.1e-11 75.1 34 91.2
Actinidia10255 Actinidia chinensis HOM05D004741 ORTHO05D005454 6.7e-09 65.9 36 80.6
CAN.G1057.23 Capsicum annuum HOM05D004741 ORTHO05D005454 3.7e-07 60.1 53 50.9
Gohir.A02G000100 Gossypium hirsutum HOM05D003958 ORTHO05D005454 3.7e-07 60.1 66 42.4


User provided reference genes

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