Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold48G17900 Striga asiatica HOM05D003391 ORTHO05D013251 2.6e-84 315.5 170 100.0
SGA_v2.0_scaffold62G21434 Striga asiatica HOM05D003391 ORTHO05D005563 1.8e-53 213.0 181 74.0
MSTRG.9187 Avicennia marina HOM05D003391 ORTHO05D005563 2.5e-39 166.0 181 57.5
MSTRG.27454 Avicennia marina HOM05D003391 ORTHO05D005563 3.3e-39 165.6 181 58.0
SalBow4G0334 Salvia bowleyana HOM05D003391 ORTHO05D005563 1.2e-38 163.7 184 59.8
Migut.F02007 Erythranthe guttata HOM05D003391 ORTHO05D005563 4.7e-38 161.8 181 58.0
Migut.F01784 Erythranthe guttata HOM05D003391 ORTHO05D005563 3.2e-34 149.1 181 55.8
unitig_899.g14436 Utricularia gibba HOM05D003391 ORTHO05D005563 4.6e-33 145.2 178 52.2
Hund02122 Selenicereus undatus HOM05D003391 ORTHO05D005563 2.3e-29 132.9 146 55.5
AUR62023891 Chenopodium quinoa HOM05D003391 ORTHO05D005563 4.0e-29 132.1 146 52.1
Sabra16G0023000 Salix brachista HOM05D003391 ORTHO05D005563 5.2e-29 131.7 179 48.0
Sabra16G0029200 Salix brachista HOM05D003391 ORTHO05D005563 5.2e-29 131.7 179 48.0
Potri.016G023000 Populus trichocarpa HOM05D003391 ORTHO05D005563 7.6e-28 127.9 179 46.9
Oeu030440.3 Olea europaea HOM05D003391 ORTHO05D005563 9.9e-28 127.5 181 48.6
Manes.01G037700 Manihot esculenta HOM05D003391 ORTHO05D005563 1.3e-27 127.1 178 46.1
Oeu033843.4 Olea europaea HOM05D003391 ORTHO05D005563 1.7e-27 126.7 181 48.6
TPR.G10474 Trifolium pratense HOM05D003391 ORTHO05D005563 4.9e-27 125.2 178 46.1
TWI74G0249 Tripterygium wilfordii HOM05D003391 ORTHO05D005563 8.4e-27 124.4 178 46.1
CANSAT64G0651 Cannabis sativa HOM05D003391 ORTHO05D005563 1.1e-26 124.0 178 45.5
Nitab4.5_0007706g0020 Nicotiana tabacum HOM05D003391 ORTHO05D005563 1.4e-26 123.6 181 46.4
arahy.Tifrunner.gnm1.ann1.635YAA Arachis hypogaea HOM05D003391 ORTHO05D005563 1.9e-26 123.2 178 45.5
arahy.Tifrunner.gnm1.ann1.QTWQ8J Arachis hypogaea HOM05D003391 ORTHO05D005563 1.9e-26 123.2 178 45.5
QL04p065456 Quercus lobata HOM05D003391 ORTHO05D005563 1.9e-26 123.2 179 45.8
ClCG11G016680 Citrullus lanatus HOM05D003391 ORTHO05D005563 3.2e-26 122.5 178 46.1
CAN.G466.12 Capsicum annuum HOM05D003391 ORTHO05D005563 4.1e-26 122.1 181 45.9
Ca_11369_v3 Cicer arietinum L. HOM05D003391 ORTHO05D005563 4.1e-26 122.1 178 45.5
Ca_30786_v3 Cicer arietinum L. HOM05D003391 ORTHO05D005563 4.1e-26 122.1 178 45.5
MELO3C026391.2 Cucumis melo HOM05D003391 ORTHO05D005563 4.1e-26 122.1 178 45.5
Os01g0906200 Oryza sativa ssp. japonica HOM05D003391 ORTHO05D005563 4.1e-26 122.1 180 44.4
CSS0023421 Camellia sinensis var. sinensis HOM05D003391 ORTHO05D005563 5.4e-26 121.7 186 44.6
CsaV3_4G032190 Cucumis sativus L. HOM05D003391 ORTHO05D005563 5.4e-26 121.7 180 45.6
Solyc04g049490.3 Solanum lycopersicum HOM05D003391 ORTHO05D005563 7.1e-26 121.3 181 45.9
Sopen04g019460 Solanum pennellii HOM05D003391 ORTHO05D005563 7.1e-26 121.3 181 45.9
PGSC0003DMG402012873 Solanum tuberosum HOM05D003391 ORTHO05D005563 7.1e-26 121.3 181 45.9
Glyma.09G018300 Glycine max HOM05D003391 ORTHO05D005563 9.2e-26 120.9 182 44.5
Nitab4.5_0000575g0140 Nicotiana tabacum HOM05D003391 ORTHO05D005563 9.2e-26 120.9 180 45.6
MD09G1135000 Malus domestica HOM05D003391 ORTHO05D005563 1.2e-25 120.6 178 46.6
arahy.Tifrunner.gnm1.ann1.MM6MID Arachis hypogaea HOM05D003391 ORTHO05D005563 1.6e-25 120.2 178 44.4
CiPaw.10G102000 Carya illinoinensis HOM05D003391 ORTHO05D005563 1.6e-25 120.2 178 43.8
Carub.0001s3957 Capsella rubella HOM05D003391 ORTHO05D005563 2.1e-25 119.8 178 44.4
Dinv04581 Davidia involucrata HOM05D003391 ORTHO05D005563 2.1e-25 119.8 178 44.4
Gohir.D08G181000 Gossypium hirsutum HOM05D003391 ORTHO05D005563 2.1e-25 119.8 182 45.1
Gorai.004G190000 Gossypium raimondii HOM05D003391 ORTHO05D005563 2.1e-25 119.8 182 45.1
Lalb_Chr18g0057621 Lupinus albus HOM05D003391 ORTHO05D005563 2.1e-25 119.8 178 44.9
Lj6g0008612 Lotus japonicus HOM05D003391 ORTHO05D005563 2.7e-25 119.4 178 43.8
MD17G1124000 Malus domestica HOM05D003391 ORTHO05D005563 2.7e-25 119.4 180 45.6
Sed0012933 Sechium edule HOM05D003391 ORTHO05D005563 2.7e-25 119.4 180 44.4
Atru.chr13.1440 Acer truncatum HOM05D003391 ORTHO05D005563 3.5e-25 119.0 179 45.8
Atru.chr13.1465 Acer truncatum HOM05D003391 ORTHO05D005563 3.5e-25 119.0 179 45.8
Medtr2g028270 Medicago truncatula HOM05D003391 ORTHO05D005563 3.5e-25 119.0 178 43.8
Ciclev10028552m.g Citrus clementina HOM05D003391 ORTHO05D005563 4.6e-25 118.6 178 44.9
CAN.G998.14 Capsicum annuum HOM05D003391 ORTHO05D005563 6.0e-25 118.2 181 45.3
FvH4_6g40130 Fragaria vesca HOM05D003391 ORTHO05D005563 6.0e-25 118.2 178 44.9
Gohir.A08G160766 Gossypium hirsutum HOM05D003391 ORTHO05D005563 6.0e-25 118.2 182 44.5
BcaB02g11154 Brassica carinata HOM05D003391 ORTHO05D005563 1.0e-24 117.5 178 42.7
BcaC05g27411 Brassica carinata HOM05D003391 ORTHO05D005563 1.0e-24 117.5 178 42.7
A05p20100 Brassica napus HOM05D003391 ORTHO05D005563 1.0e-24 117.5 178 42.7
C05p33590 Brassica napus HOM05D003391 ORTHO05D005563 1.0e-24 117.5 178 42.7
BraA05t20918Z Brassica rapa HOM05D003391 ORTHO05D005563 1.0e-24 117.5 178 42.7
Cpa.g.sc122.39 Carica papaya HOM05D003391 ORTHO05D005563 1.0e-24 117.5 178 44.9
Eucgr.L01917 Eucalyptus grandis HOM05D003391 ORTHO05D005563 1.0e-24 117.5 179 44.7
Lalb_Chr15g0088521 Lupinus albus HOM05D003391 ORTHO05D005563 1.0e-24 117.5 178 45.5
Nn7g37683 Nelumbo nucifera HOM05D003391 ORTHO05D005563 1.0e-24 117.5 178 48.9
Sp1g37350 Schrenkiella parvula HOM05D003391 ORTHO05D005563 1.0e-24 117.5 178 43.8
Ah.01g004390 Amaranthus hybridus HOM05D003391 ORTHO05D005563 1.3e-24 117.1 178 44.4
EL10Ac9g21140 Beta vulgaris HOM05D003391 ORTHO05D005563 1.3e-24 117.1 182 44.5
COL.COLO4_06714 Corchorus olitorius HOM05D003391 ORTHO05D005563 1.3e-24 117.1 182 43.4
TAR626G0891 Trochodendron aralioides HOM05D003391 ORTHO05D005563 1.3e-24 117.1 178 44.4
Duzib068G0467 Durio zibethinus HOM05D003391 ORTHO05D005563 1.7e-24 116.7 182 45.1
FAN05G0705 Fragaria x ananassa HOM05D003391 ORTHO05D005563 1.7e-24 116.7 178 44.4
FAN09G1714 Fragaria x ananassa HOM05D003391 ORTHO05D005563 1.7e-24 116.7 178 44.4
Aa31LG10G3790 Aethionema arabicum HOM05D003391 ORTHO05D005563 2.3e-24 116.3 179 45.3
Thecc.03G235800 Theobroma cacao HOM05D003391 ORTHO05D005563 2.3e-24 116.3 179 45.8
TWI77G0821 Tripterygium wilfordii HOM05D003391 ORTHO05D005563 2.3e-24 116.3 178 44.9
CSS0020230 Camellia sinensis var. sinensis HOM05D003391 ORTHO05D005563 3.0e-24 115.9 180 46.1
Duzib084G0647 Durio zibethinus HOM05D003391 ORTHO05D005563 3.0e-24 115.9 185 43.2
Prupe.3G191700 Prunus persica HOM05D003391 ORTHO05D005563 3.0e-24 115.9 178 45.5
FAN02G4219 Fragaria x ananassa HOM05D003391 ORTHO05D005563 3.9e-24 115.5 178 44.4
PGR042G2316 Punica granatum HOM05D003391 ORTHO05D005563 5.1e-24 115.2 180 44.4
GSVIVG01016094001 Vitis vinifera HOM05D003391 ORTHO05D005563 5.1e-24 115.2 183 47.5
Aqoxy3G00251 Aquilegia oxysepala HOM05D003391 ORTHO05D005563 6.6e-24 114.8 180 43.9
Phvul.006G134000 Phaseolus vulgaris HOM05D003391 ORTHO05D005563 6.6e-24 114.8 178 43.3
MBI18_g28220_MAGBIO Magnolia biondii HOM05D003391 ORTHO05D005563 8.6e-24 114.4 180 45.0
BolC5t32086H Brassica oleracea HOM05D003391 ORTHO05D005563 1.1e-23 114.0 178 42.1
VMungo0540G0836 Vigna mungo HOM05D003391 ORTHO05D005563 1.1e-23 114.0 178 43.8
Glyma.15G124200 Glycine max HOM05D003391 ORTHO05D005563 1.5e-23 113.6 182 42.3
SHI21339 Sapria himalayana HOM05D003391 ORTHO05D005563 3.3e-23 112.5 181 44.2
AL1G58160 Arabidopsis lyrata HOM05D003391 ORTHO05D005563 5.6e-23 111.7 178 42.1
AT1G50500 Arabidopsis thaliana HOM05D003391 ORTHO05D005563 5.6e-23 111.7 178 42.1
BcaC01g01234 Brassica carinata HOM05D003391 ORTHO05D005563 7.3e-23 111.3 178 43.3
HPP92_006005 Vanilla planifolia HOM05D003391 ORTHO05D005563 7.3e-23 111.3 182 42.9
AUR62022296 Chenopodium quinoa HOM05D003391 ORTHO05D005563 9.6e-23 110.9 180 46.1
RcHm_v2.0_Chr2g0154761 Rosa chinensis HOM05D003391 ORTHO05D005563 9.6e-23 110.9 178 43.8
Cfa018226 Carpinus fangiana HOM05D003391 ORTHO05D005563 1.2e-22 110.5 178 47.8
FAN14G1902 Fragaria x ananassa HOM05D003391 ORTHO05D005563 2.1e-22 109.8 197 40.6
HanXRQChr03g0093781 Helianthus annuus HOM05D003391 ORTHO05D005563 2.1e-22 109.8 178 41.6
HanXRQChr04g0122221 Helianthus annuus HOM05D003391 ORTHO05D005563 2.8e-22 109.4 178 44.9
Actinidia37789 Actinidia chinensis HOM05D003391 ORTHO05D005563 3.6e-22 109.0 184 46.7
C03p89680 Brassica napus HOM05D003391 ORTHO05D005563 3.6e-22 109.0 178 42.7
THA.LOC104809239 Tarenaya hassleriana HOM05D003391 ORTHO05D005563 4.7e-22 108.6 178 44.9
ATR1098G037 Amborella trichopoda HOM05D003391 ORTHO05D005563 3.1e-21 105.9 181 43.1
DCAR_003077 Daucus carota HOM05D003391 ORTHO05D005563 3.1e-21 105.9 180 48.3
ECA236G2623 Erigeron canadensis HOM05D003391 ORTHO05D005563 3.1e-21 105.9 178 43.3
Lsat_1_v5_gn_3_133361 Lactuca sativa HOM05D003391 ORTHO05D005563 3.1e-21 105.9 178 41.6
Rhsim05G0168000 Rhododendron simsii HOM05D003391 ORTHO05D005563 3.1e-21 105.9 179 42.5
Zm00001eb144220 Zea mays HOM05D003391 ORTHO05D005563 4.0e-21 105.5 185 46.5
Cc06_g14340 Coffea canephora HOM05D003391 ORTHO05D005563 5.2e-21 105.1 181 47.5
PSO675G3205 Papaver somniferum HOM05D003391 ORTHO05D005563 6.9e-21 104.8 178 41.0
SEGI_21663 Sequoiadendron giganteum HOM05D003391 ORTHO05D005563 6.9e-21 104.8 192 38.0
Hma1.2p1_0583F.1_g183000 Hydrangea macrophylla HOM05D003391 ORTHO05D005563 1.5e-20 103.6 186 44.1
PSO541G1880 Papaver somniferum HOM05D003391 ORTHO05D005563 2.0e-20 103.2 179 45.8
BolC3t21285H Brassica oleracea HOM05D003391 ORTHO05D005563 3.4e-20 102.4 190 40.5
SEGI_03483 Sequoiadendron giganteum HOM05D003391 ORTHO05D005563 9.9e-20 100.9 179 39.7
ECA240G2134 Erigeron canadensis HOM05D003391 ORTHO05D005563 1.3e-19 100.5 180 40.0
vmacro13793 Vaccinium macrocarpon HOM05D003391 ORTHO05D005563 2.2e-19 99.8 178 39.3
MBI18_g28219_MAGBIO Magnolia biondii HOM05D003391 ORTHO05D005563 1.9e-18 96.7 218 37.6
CARHR040520 Cardamine hirsuta HOM05D003391 ORTHO05D005563 4.2e-18 95.5 171 39.2
Peaxi162Scf00072g00087 Petunia axillaris HOM05D003391 ORTHO05D005563 4.2e-18 95.5 160 44.4
Lj7A654G26 Lonicera japonica HOM05D003391 ORTHO05D005563 7.1e-18 94.7 178 42.7
SGA_v2.0_scaffold94G28399 Striga asiatica HOM05D003391 ORTHO05D003123 7.1e-18 94.7 59 84.7
CDE05G3605 Ceratophyllum demersum HOM05D003391 ORTHO05D005563 4.6e-17 92.0 157 41.4
Haze_17876 Corylus avellana HOM05D003391 ORTHO05D005563 4.6e-17 92.0 218 39.4
Lsat_1_v5_gn_7_7561 Lactuca sativa HOM05D003391 ORTHO05D005563 2.5e-15 86.3 186 41.4
Dinv10208 Davidia involucrata HOM05D003391 ORTHO05D005563 7.3e-15 84.7 145 40.0
CAN.G5179.1 Capsicum annuum HOM05D003391 ORTHO05D005563 4.8e-14 82.0 111 45.9
AL1G58840 Arabidopsis lyrata HOM05D003391 ORTHO05D005563 5.3e-13 78.6 66 54.5
Thhalv10012404m.g Eutrema salsugineum HOM05D003391 ORTHO05D005563 6.9e-13 78.2 108 44.4
Sc24g0003350 Simmondsia chinensis HOM05D003391 ORTHO05D005563 1.2e-12 77.4 100 46.0
Actinidia03950 Actinidia chinensis HOM05D003391 ORTHO05D005563 1.5e-12 77.0 149 43.0
AL1G58810 Arabidopsis lyrata HOM05D003391 ORTHO05D005563 1.3e-11 73.9 66 54.5
SMO196G0220 Selaginella moellendorffii HOM05D003391 ORTHO05D005563 2.9e-11 72.8 175 34.3
Psat1g171000 Pisum sativum HOM05D003391 ORTHO05D005563 4.6e-09 65.5 40 85.0
A02p35070 Brassica napus HOM05D003391 ORTHO05D013251 7.9e-09 64.7 88 45.5
CARHR041020 Cardamine hirsuta HOM05D003391 ORTHO05D013251 7.9e-09 64.7 180 31.1
Mapoly0030s0152 Marchantia polymorpha HOM05D003391 ORTHO05D005563 1.0e-08 64.3 192 30.7
Pp3c8_8190 Physcomitrium patens HOM05D003391 ORTHO05D005563 2.3e-08 63.2 190 29.5
AT1G50970 Arabidopsis thaliana HOM05D003391 ORTHO05D005563 4.3e-07 58.9 174 32.2
Pp3c24_4920 Physcomitrium patens HOM05D003391 ORTHO05D005563 9.6e-07 57.8 176 30.7


User provided reference genes

Program Settings