Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold46G17389 Striga asiatica HOM05D005653 ORTHO05D007013 4.3e-175 617.8 301 100.0
Peaxi162Scf00128g01533 Petunia axillaris HOM05D005653 ORTHO05D007013 1.8e-120 436.4 297 71.7
SalBow2G0115 Salvia bowleyana HOM05D005653 ORTHO05D007013 3.3e-119 432.2 317 69.4
Migut.K01002 Erythranthe guttata HOM05D005653 ORTHO05D007013 7.4e-119 431.0 314 70.4
PGSC0003DMG400019810 Solanum tuberosum HOM05D005653 ORTHO05D007013 4.8e-118 428.3 297 71.0
Cc11_g17180 Coffea canephora HOM05D005653 ORTHO05D007013 1.0e-115 420.6 297 69.4
QL03p051746 Quercus lobata HOM05D005653 ORTHO05D007013 1.7e-115 419.9 314 68.8
CAN.G789.4 Capsicum annuum HOM05D005653 ORTHO05D007013 1.4e-114 416.8 315 66.7
Lsat_1_v5_gn_8_147520 Lactuca sativa HOM05D005653 ORTHO05D007013 3.2e-114 415.6 314 67.2
PGR102G3026 Punica granatum HOM05D005653 ORTHO05D007013 3.2e-114 415.6 314 68.2
PSO478G2696 Papaver somniferum HOM05D005653 ORTHO05D007013 4.2e-114 415.2 314 66.9
arahy.Tifrunner.gnm1.ann1.8E8WMD Arachis hypogaea HOM05D005653 ORTHO05D007013 9.3e-114 414.1 314 66.9
arahy.Tifrunner.gnm1.ann1.K5AHSV Arachis hypogaea HOM05D005653 ORTHO05D007013 9.3e-114 414.1 314 66.9
ClCG06G002070 Citrullus lanatus HOM05D005653 ORTHO05D007013 1.6e-113 413.3 314 66.9
PSO017G4941 Papaver somniferum HOM05D005653 ORTHO05D007013 2.7e-113 412.5 314 66.6
Solyc05g015860.4 Solanum lycopersicum HOM05D005653 ORTHO05D007013 2.7e-113 412.5 314 66.2
EL10Ac6g13536 Beta vulgaris HOM05D005653 ORTHO05D007013 3.6e-113 412.1 297 69.0
VMungo1383G3612 Vigna mungo HOM05D005653 ORTHO05D007013 6.1e-113 411.4 314 65.9
GSVIVG01010526001 Vitis vinifera HOM05D005653 ORTHO05D007013 7.9e-113 411.0 314 66.9
TPR.G2913 Trifolium pratense HOM05D005653 ORTHO05D007013 1.4e-112 410.2 318 64.8
ECA233G0831 Erigeron canadensis HOM05D005653 ORTHO05D007013 1.8e-112 409.8 314 65.9
MD13G1122300 Malus domestica HOM05D005653 ORTHO05D007013 2.3e-112 409.5 314 66.2
THA.LOC104820527 Tarenaya hassleriana HOM05D005653 ORTHO05D007013 3.0e-112 409.1 314 66.2
Ciclev10031168m.g Citrus clementina HOM05D005653 ORTHO05D007013 3.9e-112 408.7 314 65.9
Glyma.18G284300 Glycine max HOM05D005653 ORTHO05D007013 3.9e-112 408.7 314 65.6
Lj3A1072T24 Lonicera japonica HOM05D005653 ORTHO05D007013 3.9e-112 408.7 314 67.5
TWI18G0855 Tripterygium wilfordii HOM05D005653 ORTHO05D007013 3.9e-112 408.7 314 66.6
Actinidia39799 Actinidia chinensis HOM05D005653 ORTHO05D007013 5.1e-112 408.3 314 66.6
Prupe.1G222900 Prunus persica HOM05D005653 ORTHO05D007013 5.1e-112 408.3 314 66.6
Haze_12446 Corylus avellana HOM05D005653 ORTHO05D007013 6.7e-112 407.9 314 66.6
Eucgr.B03521 Eucalyptus grandis HOM05D005653 ORTHO05D007013 6.7e-112 407.9 314 66.6
Psat3g188000 Pisum sativum HOM05D005653 ORTHO05D007013 8.8e-112 407.5 314 65.6
MELO3C022321.2 Cucumis melo HOM05D005653 ORTHO05D007013 1.1e-111 407.1 314 66.6
FAN07G0042 Fragaria x ananassa HOM05D005653 ORTHO05D007013 1.1e-111 407.1 314 65.9
RcHm_v2.0_Chr4g0429841 Rosa chinensis HOM05D005653 ORTHO05D007013 1.1e-111 407.1 314 66.2
Thecc.02G202100 Theobroma cacao HOM05D005653 ORTHO05D007013 1.1e-111 407.1 314 67.2
FvH4_4g23470 Fragaria vesca HOM05D005653 ORTHO05D007013 2.5e-111 406.0 314 65.6
HanXRQChr08g0209781 Helianthus annuus HOM05D005653 ORTHO05D007013 3.3e-111 405.6 314 65.0
Cfa009387 Carpinus fangiana HOM05D005653 ORTHO05D007013 4.3e-111 405.2 314 66.2
Sed0008245 Sechium edule HOM05D005653 ORTHO05D007013 4.3e-111 405.2 314 65.6
CSS0037525 Camellia sinensis var. sinensis HOM05D005653 ORTHO05D007013 7.4e-111 404.4 314 66.9
CSS0048785 Camellia sinensis var. sinensis HOM05D005653 ORTHO05D007013 7.4e-111 404.4 314 66.9
FAN12G1333 Fragaria x ananassa HOM05D005653 ORTHO05D007013 2.2e-110 402.9 314 65.3
Rhsim12G0094700 Rhododendron simsii HOM05D005653 ORTHO05D007013 2.2e-110 402.9 314 65.9
Manes.12G008600 Manihot esculenta HOM05D005653 ORTHO05D007013 2.8e-110 402.5 314 64.6
Aqoxy5G03294 Aquilegia oxysepala HOM05D005653 ORTHO05D007013 3.7e-110 402.1 314 65.3
TAR374G1158 Trochodendron aralioides HOM05D005653 ORTHO05D007013 1.1e-109 400.6 314 65.3
Glyma.02G097200 Glycine max HOM05D005653 ORTHO05D007013 1.4e-109 400.2 314 64.3
Lj1g0002640 Lotus japonicus HOM05D005653 ORTHO05D007013 1.4e-109 400.2 314 63.4
Medtr7g022310 Medicago truncatula HOM05D005653 ORTHO05D007013 1.4e-109 400.2 314 64.3
Gorai.002G181300 Gossypium raimondii HOM05D005653 ORTHO05D007013 1.8e-109 399.8 314 66.6
Ca_07130_v3 Cicer arietinum L. HOM05D005653 ORTHO05D007013 3.1e-109 399.1 314 63.7
Atru.BG.292.p Acer truncatum HOM05D005653 ORTHO05D007013 4.1e-109 398.7 314 64.6
Atru.chr11.2357 Acer truncatum HOM05D005653 ORTHO05D007013 4.1e-109 398.7 314 64.6
DCAR_024662 Daucus carota HOM05D005653 ORTHO05D007013 4.1e-109 398.7 314 64.6
Lalb_Chr10g0092041 Lupinus albus HOM05D005653 ORTHO05D007013 9.1e-109 397.5 314 64.3
Nn4g22260 Nelumbo nucifera HOM05D005653 ORTHO05D007013 9.1e-109 397.5 341 60.1
Gohir.D01G100300 Gossypium hirsutum HOM05D005653 ORTHO05D007013 2.6e-108 396.0 314 66.2
C03p74690 Brassica napus HOM05D005653 ORTHO05D007013 3.4e-108 395.6 314 62.7
MBI11_g05337_MAGBIO Magnolia biondii HOM05D005653 ORTHO05D007013 7.7e-108 394.4 314 64.0
A08p25960 Brassica napus HOM05D005653 ORTHO05D007013 1.3e-107 393.7 314 62.7
BolC3t19717H Brassica oleracea HOM05D005653 ORTHO05D007013 1.3e-107 393.7 314 62.7
BraA08t34547Z Brassica rapa HOM05D005653 ORTHO05D007013 1.3e-107 393.7 314 62.7
SEGI_37890 Sequoiadendron giganteum HOM05D005653 ORTHO05D007013 2.2e-107 392.9 314 62.1
ATR0561G119 Amborella trichopoda HOM05D005653 ORTHO05D007013 2.9e-107 392.5 315 62.9
Sc04g0010280 Simmondsia chinensis HOM05D005653 ORTHO05D007013 2.9e-107 392.5 314 64.3
Sabra01G0042500 Salix brachista HOM05D005653 ORTHO05D007013 3.8e-107 392.1 314 64.0
CARHR027410 Cardamine hirsuta HOM05D005653 ORTHO05D007013 5.0e-107 391.7 315 64.1
Gohir.A01G153900 Gossypium hirsutum HOM05D005653 ORTHO05D007013 6.5e-107 391.3 314 65.3
Potri.003G168800 Populus trichocarpa HOM05D005653 ORTHO05D007013 1.9e-106 389.8 314 63.7
AT1G27980 Arabidopsis thaliana HOM05D005653 ORTHO05D007013 4.2e-106 388.7 314 63.1
Sp1g24170 Schrenkiella parvula HOM05D005653 ORTHO05D007013 4.2e-106 388.7 314 62.7
Carub.0001s2643 Capsella rubella HOM05D005653 ORTHO05D007013 2.7e-105 386.0 314 62.7
Aa31sc146G110 Aethionema arabicum HOM05D005653 ORTHO05D007013 4.7e-105 385.2 314 61.8
Sabra03G0123700 Salix brachista HOM05D005653 ORTHO05D007013 4.7e-105 385.2 341 60.4
AL1G41470 Arabidopsis lyrata HOM05D005653 ORTHO05D007013 7.9e-105 384.4 315 63.5
Nitab4.5_0000340g0070 Nicotiana tabacum HOM05D005653 ORTHO05D007013 1.0e-104 384.0 297 66.3
vmacro16096 Vaccinium macrocarpon HOM05D005653 ORTHO05D007013 3.3e-103 379.0 376 55.1
HPP92_006272 Vanilla planifolia HOM05D005653 ORTHO05D007013 2.2e-102 376.3 314 61.1
unitig_26.g10407 Utricularia gibba HOM05D005653 ORTHO05D007013 3.1e-101 372.5 315 60.6
SHI17985 Sapria himalayana HOM05D005653 ORTHO05D007013 2.6e-100 369.4 322 59.9
Mapoly0064s0066 Marchantia polymorpha HOM05D005653 ORTHO05D007013 3.4e-100 369.0 314 59.2
CDE05G3552 Ceratophyllum demersum HOM05D005653 ORTHO05D007013 1.3e-99 367.1 316 58.9
Os01g0100900 Oryza sativa ssp. japonica HOM05D005653 ORTHO05D007013 8.5e-99 364.4 314 60.8
Duzib268G1459 Durio zibethinus HOM05D005653 ORTHO05D007013 1.6e-97 360.1 314 62.7
Zm00001eb334070 Zea mays HOM05D005653 ORTHO05D007013 4.7e-97 358.6 314 60.5
SMO117G0322 Selaginella moellendorffii HOM05D005653 ORTHO05D007013 5.2e-96 355.1 314 58.0
COL.COLO4_05008 Corchorus olitorius HOM05D005653 ORTHO05D007013 4.4e-95 352.1 243 72.8
Pp3c25_6390 Physcomitrium patens HOM05D005653 ORTHO05D007013 7.4e-95 351.3 314 59.2
CiPaw.05G107200 Carya illinoinensis HOM05D005653 ORTHO05D007013 7.0e-93 344.7 263 67.7
Hund06105 Selenicereus undatus HOM05D005653 ORTHO05D007013 7.0e-93 344.7 366 53.3
AUR62005648 Chenopodium quinoa HOM05D005653 ORTHO05D007013 6.5e-91 338.2 241 67.2
Thhalv10009378m.g Eutrema salsugineum HOM05D005653 ORTHO05D007013 1.9e-90 336.7 271 62.7
Phvul.008G017200 Phaseolus vulgaris HOM05D005653 ORTHO05D007013 3.2e-90 335.9 263 66.2
AUR62028902 Chenopodium quinoa HOM05D005653 ORTHO05D007013 5.5e-90 335.1 242 66.1
CsaV3_6G008140 Cucumis sativus L. HOM05D005653 ORTHO05D007013 6.7e-88 328.2 263 65.4
Dinv17587 Davidia involucrata HOM05D005653 ORTHO05D007013 3.8e-83 312.4 196 76.5
CANSAT01G0083 Cannabis sativa HOM05D005653 ORTHO05D007013 9.4e-82 307.8 243 65.8
CBR_g49954 Chara braunii HOM05D005653 ORTHO05D007013 9.4e-82 307.8 313 51.8
Ah.03g135980 Amaranthus hybridus HOM05D005653 ORTHO05D007013 4.4e-71 272.3 231 62.3
Sopen05g011500 Solanum pennellii HOM05D005653 ORTHO05D007013 3.5e-68 262.7 219 62.1
MCO01G158 Micromonas commoda HOM05D005653 ORTHO05D007013 1.7e-59 233.8 303 45.9
PRCOL_00004852 Prasinoderma coloniale HOM05D005653 ORTHO05D007013 1.1e-58 231.1 317 42.9
Cre03.g155051 Chlamydomonas reinhardtii HOM05D005653 ORTHO05D007013 9.5e-58 228.0 302 44.4
Actinidia34022 Actinidia chinensis HOM05D005653 ORTHO05D007013 1.6e-49 200.7 183 56.8
Cfa025335 Carpinus fangiana HOM05D005653 ORTHO05D007013 1.1e-40 171.4 304 37.8
Haze_26914 Corylus avellana HOM05D005653 ORTHO05D007013 8.9e-40 168.3 312 36.5
Sc02g0005360 Simmondsia chinensis HOM05D005653 ORTHO05D007013 3.1e-32 143.3 97 69.1
Sc02g0005380 Simmondsia chinensis HOM05D005653 ORTHO05D007013 3.4e-31 139.8 97 68.0
HanXRQChr08g0209891 Helianthus annuus HOM05D005653 ORTHO05D007013 9.6e-26 121.7 109 57.8
Hma1.2p1_0862F.1_g229925 Hydrangea macrophylla HOM05D005653 ORTHO05D007013 2.4e-24 117.1 120 55.0
Cpa.g.c35206 Carica papaya HOM05D005653 ORTHO05D007013 1.3e-22 111.3 70 70.0
C05p26600 Brassica napus HOM05D005653 ORTHO05D007013 1.4e-21 107.8 168 43.5
BcaC05g26610 Brassica carinata HOM05D005653 ORTHO05D007013 7.9e-20 102.1 61 77.0
Lsat_1_v5_gn_7_48580 Lactuca sativa HOM05D004857 ORTHO05D005663 3.3e-10 70.1 73 49.3
CARHR229380 Cardamine hirsuta HOM05D005653 ORTHO05D007013 1.6e-09 67.8 52 53.8
FvH4_4g35930 Fragaria vesca HOM05D001138 ORTHO05D001015 2.8e-09 67.0 227 24.7
FAN17G3057 Fragaria x ananassa HOM05D001138 ORTHO05D001015 2.8e-09 67.0 227 24.2
FAN12G1270 Fragaria x ananassa HOM05D001138 ORTHO05D001015 3.7e-09 66.6 227 24.2
FAN07G2788 Fragaria x ananassa HOM05D001138 ORTHO05D001015 4.8e-09 66.2 227 24.2
RcHm_v2.0_Chr4g0445561 Rosa chinensis HOM05D001138 ORTHO05D001015 4.8e-09 66.2 228 25.0
Sc02g0005350 Simmondsia chinensis HOM05D005653 ORTHO05D007013 8.2e-09 65.5 48 68.8
Sc02g0005370 Simmondsia chinensis HOM05D005653 ORTHO05D007013 8.2e-09 65.5 48 68.8
Pp3c14_21530 Physcomitrium patens HOM05D001138 ORTHO05D001015 1.2e-07 61.6 227 26.0
Pp3c8_7810 Physcomitrium patens HOM05D001138 ORTHO05D001015 1.5e-07 61.2 230 25.2
GSVIVG01011564001 Vitis vinifera HOM05D001138 ORTHO05D001015 2.0e-07 60.8 228 24.1
arahy.Tifrunner.gnm1.ann1.5EY78G Arachis hypogaea HOM05D001138 ORTHO05D001015 2.6e-07 60.5 228 25.9
Lalb_Chr07g0188051 Lupinus albus HOM05D001138 ORTHO05D001015 4.5e-07 59.7 227 26.0
Pp3c17_22200 Physcomitrium patens HOM05D001138 ORTHO05D001015 5.8e-07 59.3 227 25.1
Phvul.002G185800 Phaseolus vulgaris HOM05D001138 ORTHO05D001015 7.6e-07 58.9 225 24.0
SEGI_27988 Sequoiadendron giganteum HOM05D001138 ORTHO05D001015 7.6e-07 58.9 229 24.5
SMO364G0042 Selaginella moellendorffii HOM05D001138 ORTHO05D001015 1.3e-06 58.2 227 25.6
CARHR035110 Cardamine hirsuta HOM05D005653 ORTHO05D007013 2.2e-06 57.4 54 57.4
TPR.G11913 Trifolium pratense HOM05D001138 ORTHO05D001015 2.2e-06 57.4 227 25.1
RcHm_v2.0_Chr4g0406101 Rosa chinensis HOM05D001138 ORTHO05D001015 3.8e-06 56.6 208 26.0
Zm00001eb081600 Zea mays HOM05D001138 ORTHO05D001015 3.8e-06 56.6 227 23.8
Aqoxy3G04158 Aquilegia oxysepala HOM05D001138 ORTHO05D001015 8.4e-06 55.5 249 22.5
FAN26G2265 Fragaria x ananassa HOM05D001138 ORTHO05D001015 8.4e-06 55.5 249 23.3


User provided reference genes

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