Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold443G51691 Striga asiatica HOM05D004741 ORTHO05D005454 1.2e-296 1022.3 489 100.0
MSTRG.20476 Avicennia marina HOM05D004741 ORTHO05D005454 2.1e-147 526.6 409 63.6
Migut.K00575 Erythranthe guttata HOM05D004741 ORTHO05D005454 2.3e-146 523.1 409 64.5
Oeu016078.1 Olea europaea HOM05D004741 ORTHO05D005454 5.5e-140 501.9 409 61.4
Dinv22023 Davidia involucrata HOM05D004741 ORTHO05D005454 1.4e-135 487.3 409 59.2
unitig_744.g24377 Utricularia gibba HOM05D004741 ORTHO05D005454 1.4e-135 487.3 409 57.9
vmacro21376 Vaccinium macrocarpon HOM05D004741 ORTHO05D005454 7.7e-134 481.5 416 58.4
Solyc07g017640.2 Solanum lycopersicum HOM05D004741 ORTHO05D005454 8.6e-133 478.0 409 58.2
CSS0005545 Camellia sinensis var. sinensis HOM05D004741 ORTHO05D005454 1.6e-131 473.8 409 58.2
Peaxi162Scf00005g04810 Petunia axillaris HOM05D004741 ORTHO05D005454 4.7e-131 472.2 408 58.1
PGSC0003DMG400002300 Solanum tuberosum HOM05D004741 ORTHO05D005454 6.1e-131 471.9 354 64.4
Nitab4.5_0006397g0010 Nicotiana tabacum HOM05D004741 ORTHO05D005454 1.4e-130 470.7 342 65.8
CAN.G673.1 Capsicum annuum HOM05D004741 ORTHO05D005454 1.8e-130 470.3 409 57.5
Sopen07g006470 Solanum pennellii HOM05D004741 ORTHO05D005454 4.4e-129 465.7 409 57.2
Lsat_1_v5_gn_6_106561 Lactuca sativa HOM05D004741 ORTHO05D005454 1.3e-128 464.2 410 56.1
Cc00_g23510 Coffea canephora HOM05D004741 ORTHO05D005454 1.7e-128 463.8 409 55.0
ECA246G1320 Erigeron canadensis HOM05D004741 ORTHO05D005454 4.9e-128 462.2 409 57.0
Lsat_1_v5_gn_4_135621 Lactuca sativa HOM05D004741 ORTHO05D005454 8.3e-128 461.5 410 55.6
GSVIVG01009251001 Vitis vinifera HOM05D004741 ORTHO05D005454 1.2e-126 457.6 409 55.5
HanXRQChr10g0277671 Helianthus annuus HOM05D004741 ORTHO05D005454 3.5e-126 456.1 401 56.9
Sed0002897 Sechium edule HOM05D004741 ORTHO05D005454 1.2e-123 447.6 409 54.0
TAR625G0772 Trochodendron aralioides HOM05D004741 ORTHO05D005454 4.7e-123 445.7 409 53.5
CiPaw.07G232700 Carya illinoinensis HOM05D004741 ORTHO05D005454 8.0e-123 444.9 409 54.5
Lj4A81G69 Lonicera japonica HOM05D004741 ORTHO05D005454 1.0e-122 444.5 454 50.4
arahy.Tifrunner.gnm1.ann1.68HE9A Arachis hypogaea HOM05D004741 ORTHO05D005454 3.1e-122 443.0 409 54.3
arahy.Tifrunner.gnm1.ann1.HM8GSV Arachis hypogaea HOM05D004741 ORTHO05D005454 3.1e-122 443.0 409 54.3
Manes.03G006700 Manihot esculenta HOM05D004741 ORTHO05D005454 4.0e-122 442.6 409 53.8
QL02p018098 Quercus lobata HOM05D004741 ORTHO05D005454 6.8e-122 441.8 409 53.5
MELO3C011313.2 Cucumis melo HOM05D004741 ORTHO05D005454 1.5e-121 440.7 409 53.1
ClCG08G013810 Citrullus lanatus HOM05D004741 ORTHO05D005454 2.0e-121 440.3 409 52.8
Nn8g39668 Nelumbo nucifera HOM05D004741 ORTHO05D005454 2.0e-121 440.3 410 54.9
Atru.chr7.2571 Acer truncatum HOM05D004741 ORTHO05D005454 3.4e-121 439.5 409 53.5
CsaV3_2G032600 Cucumis sativus L. HOM05D004741 ORTHO05D005454 3.4e-121 439.5 409 52.8
DCAR_020033 Daucus carota HOM05D004741 ORTHO05D005454 5.8e-121 438.7 409 53.8
Sc02g0008350 Simmondsia chinensis HOM05D004741 ORTHO05D005454 9.8e-121 438.0 409 53.8
PSO210G2241 Papaver somniferum HOM05D004741 ORTHO05D005454 1.3e-120 437.6 409 54.8
FAN15G2922 Fragaria x ananassa HOM05D004741 ORTHO05D005454 2.9e-120 436.4 409 51.6
TWI32G1217 Tripterygium wilfordii HOM05D004741 ORTHO05D005454 3.7e-120 436.0 409 53.1
Eucgr.C04030 Eucalyptus grandis HOM05D004741 ORTHO05D005454 8.3e-120 434.9 409 52.1
RcHm_v2.0_Chr6g0299131 Rosa chinensis HOM05D004741 ORTHO05D005454 8.3e-120 434.9 410 52.0
Aqoxy5G01951 Aquilegia oxysepala HOM05D004741 ORTHO05D005454 1.1e-119 434.5 409 53.8
PSO761G0470 Papaver somniferum HOM05D004741 ORTHO05D005454 1.1e-119 434.5 409 54.8
FvH4_2g41360 Fragaria vesca HOM05D004741 ORTHO05D005454 3.2e-119 433.0 409 51.3
SalBow7G0863 Salvia bowleyana HOM05D004741 ORTHO05D005454 3.2e-119 433.0 368 59.0
Glyma.04G059700 Glycine max HOM05D004741 ORTHO05D005454 4.1e-119 432.6 409 54.0
Ca_15788_v3 Cicer arietinum L. HOM05D004741 ORTHO05D005454 5.4e-119 432.2 409 53.5
SalBow7G1987 Salvia bowleyana HOM05D004741 ORTHO05D005454 5.4e-119 432.2 368 59.0
Lalb_Chr08g0244491 Lupinus albus HOM05D004741 ORTHO05D005454 7.0e-119 431.8 409 54.3
VMungo1309G1293 Vigna mungo HOM05D004741 ORTHO05D005454 2.0e-118 430.3 409 53.8
Gohir.D11G176300 Gossypium hirsutum HOM05D004741 ORTHO05D005454 2.7e-118 429.9 410 52.2
Thecc.09G013800 Theobroma cacao HOM05D004741 ORTHO05D005454 3.5e-118 429.5 409 51.6
Phvul.009G085900 Phaseolus vulgaris HOM05D004741 ORTHO05D005454 3.0e-117 426.4 353 58.4
AUR62035754 Chenopodium quinoa HOM05D004741 ORTHO05D005454 3.9e-117 426.0 411 54.5
Potri.018G015300 Populus trichocarpa HOM05D004741 ORTHO05D005454 6.6e-117 425.2 409 52.8
TPR.G1862 Trifolium pratense HOM05D004741 ORTHO05D005454 1.1e-116 424.5 409 51.8
Duzib168G2074 Durio zibethinus HOM05D004741 ORTHO05D005454 1.5e-116 424.1 409 50.9
THA.LOC104803607 Tarenaya hassleriana HOM05D004741 ORTHO05D005454 1.9e-116 423.7 409 52.1
Lj1g0020479 Lotus japonicus HOM05D004741 ORTHO05D005454 5.6e-116 422.2 410 52.4
EL10Ac1g02297 Beta vulgaris HOM05D004741 ORTHO05D005454 9.5e-116 421.4 409 52.3
Medtr3g105810 Medicago truncatula HOM05D004741 ORTHO05D005454 9.5e-116 421.4 409 52.8
Zm00001eb215780 Zea mays HOM05D004741 ORTHO05D005454 1.2e-115 421.0 409 51.6
Psat5g034520 Pisum sativum HOM05D004741 ORTHO05D005454 2.1e-115 420.2 409 52.6
Aa31LG2G18560 Aethionema arabicum HOM05D004741 ORTHO05D005454 2.8e-115 419.9 421 51.1
SGA_v2.0_scaffold48G18066 Striga asiatica HOM05D004741 ORTHO05D005454 2.8e-115 419.9 362 61.0
Sabra18G0018800 Salix brachista HOM05D004741 ORTHO05D005454 4.7e-115 419.1 381 54.6
Cfa013018 Carpinus fangiana HOM05D004741 ORTHO05D005454 2.3e-114 416.8 438 50.0
MD15G1043800 Malus domestica HOM05D004741 ORTHO05D005454 4.0e-114 416.0 409 50.9
ATR0767G225 Amborella trichopoda HOM05D004741 ORTHO05D005454 6.8e-114 415.2 411 50.9
CARHR239670 Cardamine hirsuta HOM05D004741 ORTHO05D005454 6.8e-114 415.2 409 51.3
AT4G31770 Arabidopsis thaliana HOM05D004741 ORTHO05D005454 7.5e-113 411.8 409 51.8
CDE06G0415 Ceratophyllum demersum HOM05D004741 ORTHO05D005454 1.3e-112 411.0 409 51.3
A08p18460 Brassica napus HOM05D004741 ORTHO05D005454 2.2e-112 410.2 410 50.7
AL7G20240 Arabidopsis lyrata HOM05D004741 ORTHO05D005454 3.7e-112 409.5 409 51.6
RcHm_v2.0_Chr2g0135121 Rosa chinensis HOM05D004741 ORTHO05D005454 3.7e-112 409.5 411 51.8
BcaB03g12718 Brassica carinata HOM05D004741 ORTHO05D005454 4.9e-112 409.1 411 51.1
Thhalv10025305m.g Eutrema salsugineum HOM05D004741 ORTHO05D005454 1.1e-111 407.9 412 50.0
BraA08t33808Z Brassica rapa HOM05D004741 ORTHO05D005454 1.9e-111 407.1 410 50.5
COL.COLO4_18967 Corchorus olitorius HOM05D004741 ORTHO05D005454 5.4e-111 405.6 409 50.1
Sp7g29560 Schrenkiella parvula HOM05D004741 ORTHO05D005454 1.6e-110 404.1 360 55.0
BcaNung01502 Brassica carinata HOM05D004741 ORTHO05D005454 2.1e-110 403.7 409 49.4
Carub.0007s0879 Capsella rubella HOM05D004741 ORTHO05D005454 2.1e-110 403.7 410 50.5
BcaNung04120 Brassica carinata HOM05D004741 ORTHO05D005454 2.3e-109 400.2 360 53.1
C07p58870 Brassica napus HOM05D004741 ORTHO05D005454 3.9e-109 399.4 411 49.1
BolC7t46334H Brassica oleracea HOM05D004741 ORTHO05D005454 5.1e-109 399.1 410 49.3
BraA03t15138Z Brassica rapa HOM05D004741 ORTHO05D005454 5.1e-109 399.1 410 49.3
A03p60970 Brassica napus HOM05D004741 ORTHO05D005454 1.1e-108 397.9 410 49.3
Aqoxy1G00870 Aquilegia oxysepala HOM05D004741 ORTHO05D005454 7.3e-108 395.2 413 49.9
C03p87550 Brassica napus HOM05D004741 ORTHO05D005454 9.5e-108 394.8 415 49.2
BolC3t21075H Brassica oleracea HOM05D004741 ORTHO05D005454 2.1e-107 393.7 415 49.2
SEGI_18909 Sequoiadendron giganteum HOM05D004741 ORTHO05D005454 2.1e-107 393.7 350 55.4
MBI16_g14670_MAGBIO Magnolia biondii HOM05D004741 ORTHO05D005454 4.7e-107 392.5 401 50.6
Cpa.g.sc40.1 Carica papaya HOM05D004741 ORTHO05D005454 8.9e-106 388.3 303 59.1
Atru.BG.288.p Acer truncatum HOM05D004741 ORTHO05D005454 4.1e-103 379.4 337 52.5
Dinv44899 Davidia involucrata HOM05D004741 ORTHO05D005454 9.2e-103 378.3 234 74.4
BcaNung01500 Brassica carinata HOM05D004741 ORTHO05D005454 2.3e-101 373.6 395 48.1
Aqoxy4G02579 Aquilegia oxysepala HOM05D004741 ORTHO05D005454 2.5e-100 370.2 407 49.1
Mapoly0014s0124 Marchantia polymorpha HOM05D004741 ORTHO05D005454 8.1e-99 365.2 409 46.7
Gohir.1Z049533 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.4e-95 354.4 316 55.4
Rhsim06G0068400 Rhododendron simsii HOM05D004741 ORTHO05D005454 2.7e-94 350.1 416 46.6
Pp3c24_19510 Physcomitrium patens HOM05D004741 ORTHO05D005454 7.8e-94 348.6 413 44.8
CBR_g10907 Chara braunii HOM05D004741 ORTHO05D005454 1.3e-93 347.8 439 44.0
Ah.04g152730 Amaranthus hybridus HOM05D004741 ORTHO05D005454 1.9e-92 344.0 329 52.6
Gohir.A02G000200 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.6e-91 340.9 332 51.2
HPP92_007721 Vanilla planifolia HOM05D004741 ORTHO05D005454 3.1e-90 336.7 368 48.4
SMO145G0212 Selaginella moellendorffii HOM05D004741 ORTHO05D005454 1.1e-87 328.2 411 42.8
SMO284G0001 Selaginella moellendorffii HOM05D004741 ORTHO05D005454 1.1e-87 328.2 411 43.1
Gohir.A11G330400 Gossypium hirsutum HOM05D004741 ORTHO05D005454 6.0e-86 322.4 314 51.0
Cre02.g146950 Chlamydomonas reinhardtii HOM05D004741 ORTHO05D005454 7.4e-84 315.5 479 40.3
FvH4_6g29560 Fragaria vesca HOM05D004741 ORTHO05D005454 5.3e-82 309.3 347 46.7
FAN14G3005 Fragaria x ananassa HOM05D004741 ORTHO05D005454 1.7e-80 304.3 347 46.4
SGA_v2.0_scaffold24G10244 Striga asiatica HOM05D004741 ORTHO05D005454 4.6e-78 296.2 155 87.7
Gohir.A07G233600 Gossypium hirsutum HOM05D004741 ORTHO05D005454 6.0e-78 295.8 363 46.8
Gohir.A12G000500 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.0e-77 295.0 298 51.7
Gohir.A05G415901 Gossypium hirsutum HOM05D004741 ORTHO05D005454 3.3e-76 290.0 253 54.2
MCO02G476 Micromonas commoda HOM05D004741 ORTHO05D005454 3.3e-76 290.0 283 47.0
Nitab4.5_0000159g0030 Nicotiana tabacum HOM05D004741 ORTHO05D005454 1.4e-74 284.6 155 83.9
AUR62033828 Chenopodium quinoa HOM05D004741 ORTHO05D005454 3.4e-73 280.0 357 45.7
BcaC01g01061 Brassica carinata HOM05D004741 ORTHO05D005454 3.9e-69 266.5 333 44.1
PRCOL_00004462 Prasinoderma coloniale HOM05D004741 ORTHO05D005454 4.8e-67 259.6 446 35.9
Hund05236 Selenicereus undatus HOM05D004741 ORTHO05D005454 6.3e-67 259.2 315 43.5
Prupe.1G397300 Prunus persica HOM05D004741 ORTHO05D005454 8.2e-67 258.8 315 43.5
Cfa025655 Carpinus fangiana HOM05D004741 ORTHO05D005454 7.2e-63 245.7 391 38.6
MD08G1051300 Malus domestica HOM05D004741 ORTHO05D005454 1.6e-62 244.6 246 50.4
PSO210G0837 Papaver somniferum HOM05D004741 ORTHO05D005454 1.0e-61 241.9 154 68.2
Gohir.A03G000005 Gossypium hirsutum HOM05D004741 ORTHO05D005454 9.7e-60 235.3 155 69.0
Gohir.A02G000050 Gossypium hirsutum HOM05D004741 ORTHO05D005454 5.3e-58 229.6 155 66.5
Gohir.A09G249600 Gossypium hirsutum HOM05D004741 ORTHO05D005454 2.2e-56 224.2 160 63.8
Gohir.1Z049489 Gossypium hirsutum HOM05D004741 ORTHO05D005454 7.2e-55 219.2 162 63.0
BcaB02g11404 Brassica carinata HOM05D004741 ORTHO05D005454 2.1e-54 217.6 147 63.9
Haze_27111 Corylus avellana HOM05D004741 ORTHO05D005454 2.3e-53 214.2 312 36.2
Gohir.A12G001100 Gossypium hirsutum HOM05D004741 ORTHO05D005454 3.9e-53 213.4 312 40.4
RcHm_v2.0_Chr1g0357361 Rosa chinensis HOM05D004741 ORTHO05D005454 5.5e-47 193.0 211 46.0
Sopen07g006070 Solanum pennellii HOM05D004741 ORTHO05D005454 7.2e-39 166.0 86 87.2
Gohir.A12G001050 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.8e-37 161.4 96 70.8
Gohir.1Z049306 Gossypium hirsutum HOM05D004741 ORTHO05D005454 9.7e-36 155.6 107 65.4
Gohir.1Z049408 Gossypium hirsutum HOM05D004741 ORTHO05D005454 9.7e-36 155.6 107 65.4
Gohir.1Z049565 Gossypium hirsutum HOM05D004741 ORTHO05D005454 9.7e-36 155.6 107 65.4
Gohir.1Z049424 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.1e-34 152.1 107 64.5
Lsat_1_v5_gn_9_90121 Lactuca sativa HOM05D000676 ORTHO05D001458 4.5e-33 146.7 87 73.6
Gohir.A04G148266 Gossypium hirsutum HOM05D004741 ORTHO05D005454 4.7e-30 136.7 157 45.9
AagrBONN_evm.TU.Sc2ySwM_369.559 Anthoceros agrestis HOM05D004741 ORTHO05D005454 6.8e-29 132.9 215 37.2
Gohir.A07G000083 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.5e-28 131.7 150 46.7
Os03g0725300 Oryza sativa ssp. japonica HOM05D004741 ORTHO05D005454 7.0e-26 122.9 84 64.3
Gohir.D12G000832 Gossypium hirsutum HOM05D004741 ORTHO05D005454 4.7e-22 110.2 75 65.3
Gohir.A13G000900 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.0e-21 109.0 66 69.7
MD13G1228500 Malus domestica HOM05D004741 ORTHO05D005454 3.4e-20 104.0 70 62.9
ATR0582G232 Amborella trichopoda HOM05D004741 ORTHO05D005454 1.2e-17 95.5 63 61.9
SalBow7G3287 Salvia bowleyana HOM05D004741 ORTHO05D005454 2.1e-14 84.7 43 86.0
CAN.G1057.23 Capsicum annuum HOM05D004741 ORTHO05D005454 1.8e-10 71.6 64 50.0
Actinidia10255 Actinidia chinensis HOM05D004741 ORTHO05D005454 7.8e-09 66.2 36 80.6
PSO541G5767 Papaver somniferum HOM05D001230 ORTHO05D001067 6.6e-08 63.2 41 65.9


User provided reference genes

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