Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold43G16236 Striga asiatica HOM05D004774 ORTHO05D005514 2.3e-99 365.5 178 100.0
SGA_v2.0_scaffold138G35272 Striga asiatica HOM05D004774 ORTHO05D005514 6.0e-76 287.7 186 77.4
MSTRG.18290 Avicennia marina HOM05D004774 ORTHO05D005514 3.6e-65 251.9 166 70.5
CAN.G1190.29 Capsicum annuum HOM05D004774 ORTHO05D005514 2.1e-57 226.1 170 62.9
GSVIVG01000730001 Vitis vinifera HOM05D004774 ORTHO05D005514 1.8e-56 223.0 170 62.4
Cc01_g18810 Coffea canephora HOM05D004774 ORTHO05D005514 1.2e-55 220.3 170 61.8
GSVIVG01011075001 Vitis vinifera HOM05D004774 ORTHO05D005514 1.2e-55 220.3 170 61.2
Migut.D00377 Erythranthe guttata HOM05D004774 ORTHO05D005514 1.5e-55 219.9 166 65.7
CSS0049587 Camellia sinensis var. sinensis HOM05D004774 ORTHO05D005514 4.5e-55 218.4 164 62.8
Dinv22475 Davidia involucrata HOM05D004774 ORTHO05D005514 9.9e-55 217.2 170 61.2
THA.LOC104815831 Tarenaya hassleriana HOM05D004774 ORTHO05D005514 9.9e-55 217.2 170 58.2
Nitab4.5_0003289g0060 Nicotiana tabacum HOM05D004774 ORTHO05D005514 1.7e-54 216.5 165 62.4
Sopen07g002340 Solanum pennellii HOM05D004774 ORTHO05D005514 2.2e-54 216.1 170 61.2
Ciclev10023915m.g Citrus clementina HOM05D004774 ORTHO05D005514 3.8e-54 215.3 170 60.6
Dinv40162 Davidia involucrata HOM05D004774 ORTHO05D005514 4.9e-54 214.9 164 62.2
Nitab4.5_0001427g0080 Nicotiana tabacum HOM05D004774 ORTHO05D005514 1.1e-53 213.8 165 61.2
CANSAT35G0005 Cannabis sativa HOM05D004774 ORTHO05D005514 1.4e-53 213.4 170 57.6
Cpa.g.sc52.135 Carica papaya HOM05D004774 ORTHO05D005514 4.2e-53 211.8 172 61.0
CiPaw.06G137100 Carya illinoinensis HOM05D004774 ORTHO05D005514 9.3e-53 210.7 164 60.4
vmacro02628 Vaccinium macrocarpon HOM05D004774 ORTHO05D005514 1.2e-52 210.3 164 61.6
Rhsim13G0031100 Rhododendron simsii HOM05D004774 ORTHO05D005514 2.1e-52 209.5 164 62.8
Solyc07g006240.4 Solanum lycopersicum HOM05D004774 ORTHO05D005514 2.7e-52 209.1 176 59.1
Nn4g23666 Nelumbo nucifera HOM05D004774 ORTHO05D005514 1.3e-51 206.8 170 57.1
Lalb_Chr17g0348441 Lupinus albus HOM05D004774 ORTHO05D005514 6.7e-51 204.5 176 58.0
QL08p045287 Quercus lobata HOM05D004774 ORTHO05D005514 6.7e-51 204.5 172 58.7
TAR636G0805 Trochodendron aralioides HOM05D004774 ORTHO05D005514 8.7e-51 204.1 164 56.7
PGSC0003DMG400011166 Solanum tuberosum HOM05D004774 ORTHO05D005514 1.1e-50 203.8 171 58.5
EL10Ac3g05825 Beta vulgaris HOM05D004774 ORTHO05D005514 3.3e-50 202.2 165 60.0
Atru.chr5.1584 Acer truncatum HOM05D004774 ORTHO05D005514 5.6e-50 201.4 164 56.1
DCAR_002682 Daucus carota HOM05D004774 ORTHO05D005514 5.6e-50 201.4 154 63.0
Thecc.01G266900 Theobroma cacao HOM05D004774 ORTHO05D005514 5.6e-50 201.4 178 55.6
Carub.0001s0611 Capsella rubella HOM05D004774 ORTHO05D005514 4.8e-49 198.4 170 52.9
Gohir.A07G209300 Gossypium hirsutum HOM05D004774 ORTHO05D005514 4.8e-49 198.4 178 54.5
TWI12G1255 Tripterygium wilfordii HOM05D004774 ORTHO05D005514 6.2e-49 198.0 172 57.6
TWI18G0081 Tripterygium wilfordii HOM05D004774 ORTHO05D005514 6.2e-49 198.0 172 57.0
Gorai.001G243200 Gossypium raimondii HOM05D004774 ORTHO05D005514 8.1e-49 197.6 178 53.9
unitig_0.g1128 Utricularia gibba HOM05D004774 ORTHO05D005514 1.1e-48 197.2 194 51.0
Gohir.D07G215400 Gossypium hirsutum HOM05D004774 ORTHO05D005514 4.0e-48 195.3 178 53.4
Hma1.2p1_1029F.1_g249620 Hydrangea macrophylla HOM05D004774 ORTHO05D005514 5.3e-48 194.9 198 52.0
Hma1.2p1_1029F.1_g249641 Hydrangea macrophylla HOM05D004774 ORTHO05D005514 5.3e-48 194.9 198 52.0
Potri.002G044500 Populus trichocarpa HOM05D004774 ORTHO05D005514 5.3e-48 194.9 167 53.9
Lsat_1_v5_gn_5_176641 Lactuca sativa HOM05D004774 ORTHO05D005514 6.9e-48 194.5 162 58.6
Manes.01G201400 Manihot esculenta HOM05D004774 ORTHO05D005514 6.9e-48 194.5 175 56.0
ClCG09G004860 Citrullus lanatus HOM05D004774 ORTHO05D005514 9.0e-48 194.1 164 56.1
Duzib138G0586 Durio zibethinus HOM05D004774 ORTHO05D005514 9.0e-48 194.1 172 55.8
CARHR006490 Cardamine hirsuta HOM05D004774 ORTHO05D005514 1.2e-47 193.7 172 53.5
Cfa005024 Carpinus fangiana HOM05D004774 ORTHO05D005514 1.5e-47 193.4 170 54.7
Lj4g0014477 Lotus japonicus HOM05D004774 ORTHO05D005514 2.6e-47 192.6 165 56.4
MD08G1227600 Malus domestica HOM05D004774 ORTHO05D005514 3.4e-47 192.2 165 56.4
COL.COLO4_05101 Corchorus olitorius HOM05D004774 ORTHO05D005514 9.9e-47 190.7 175 55.4
ECA247G2354 Erigeron canadensis HOM05D002220 ORTHO05D008182 9.9e-47 190.7 163 58.9
Aqoxy4G03157 Aquilegia oxysepala HOM05D004774 ORTHO05D005514 1.3e-46 190.3 164 55.5
Prupe.2G103200 Prunus persica HOM05D004774 ORTHO05D005514 1.3e-46 190.3 166 56.6
Aa31LG1G7840 Aethionema arabicum HOM05D004480 ORTHO05D005546 1.7e-46 189.9 172 50.6
Aqoxy7G03988 Aquilegia oxysepala HOM05D004774 ORTHO05D005514 2.2e-46 189.5 164 54.9
Sabra02G0035700 Salix brachista HOM05D004774 ORTHO05D005514 2.2e-46 189.5 167 52.1
Ca_26554_v3 Cicer arietinum L. HOM05D004774 ORTHO05D005514 2.9e-46 189.1 174 54.6
Aqoxy1G01668 Aquilegia oxysepala HOM05D004774 ORTHO05D005514 3.8e-46 188.7 164 54.9
Eucgr.B01492 Eucalyptus grandis HOM05D004774 ORTHO05D005514 4.9e-46 188.3 176 55.1
Phvul.010G020150 Phaseolus vulgaris HOM05D004774 ORTHO05D005514 6.4e-46 188.0 183 54.1
Phvul.010G020200 Phaseolus vulgaris HOM05D004774 ORTHO05D005514 6.4e-46 188.0 183 54.1
AL1G16800 Arabidopsis lyrata HOM05D004774 ORTHO05D005514 1.9e-45 186.4 172 51.2
Duzib211G0067 Durio zibethinus HOM05D004774 ORTHO05D005514 1.9e-45 186.4 177 52.0
CsaV3_7G030220 Cucumis sativus L. HOM05D004774 ORTHO05D005514 5.5e-45 184.9 161 55.3
Thhalv10028967m.g Eutrema salsugineum HOM05D004774 ORTHO05D005514 5.5e-45 184.9 166 51.8
Glyma.03G218500 Glycine max HOM05D004774 ORTHO05D005514 5.5e-45 184.9 184 52.2
AT1G06790 Arabidopsis thaliana HOM05D004774 ORTHO05D005514 9.3e-45 184.1 172 49.4
MELO3C023634.2 Cucumis melo HOM05D004774 ORTHO05D005514 1.2e-44 183.7 161 54.7
AUR62002186 Chenopodium quinoa HOM05D004774 ORTHO05D005514 2.1e-44 183.0 164 54.3
Psat3g097920 Pisum sativum HOM05D004774 ORTHO05D005514 2.7e-44 182.6 171 53.2
BraA08t35495Z Brassica rapa HOM05D004774 ORTHO05D005514 6.0e-44 181.4 171 49.1
Medtr8g072680 Medicago truncatula HOM05D004774 ORTHO05D005514 7.9e-44 181.0 175 54.3
Sed0022653 Sechium edule HOM05D004774 ORTHO05D005514 7.9e-44 181.0 166 54.2
VMungo1309G2525 Vigna mungo HOM05D004774 ORTHO05D005514 7.9e-44 181.0 184 53.8
AUR62015525 Chenopodium quinoa HOM05D004774 ORTHO05D005514 1.0e-43 180.6 164 53.7
Glyma.19G215300 Glycine max HOM05D004774 ORTHO05D005514 1.0e-43 180.6 184 52.2
PSO170G5180 Papaver somniferum HOM05D004774 ORTHO05D005514 1.0e-43 180.6 164 54.9
VMungo0331G0358 Vigna mungo HOM05D002747 ORTHO05D005514 1.0e-43 180.6 184 53.8
Sp1g05530 Schrenkiella parvula HOM05D004774 ORTHO05D005514 1.8e-43 179.9 172 50.0
BcaC07g42048 Brassica carinata HOM05D004774 ORTHO05D005514 2.3e-43 179.5 164 51.8
BolC8t52628H Brassica oleracea HOM05D004774 ORTHO05D005514 2.3e-43 179.5 171 49.7
A08p35880 Brassica napus HOM05D004774 ORTHO05D005514 3.0e-43 179.1 171 49.7
C08p02690 Brassica napus HOM05D004774 ORTHO05D005514 3.0e-43 179.1 171 49.7
BolC8t47065H Brassica oleracea HOM05D004774 ORTHO05D005514 3.0e-43 179.1 171 49.7
HPP92_027004 Vanilla planifolia HOM05D004774 ORTHO05D005514 6.7e-43 177.9 172 52.9
HPP92_015388 Vanilla planifolia HOM05D004774 ORTHO05D005514 1.1e-42 177.2 172 52.3
RcHm_v2.0_Chr5g0063451 Rosa chinensis HOM05D004774 ORTHO05D005514 1.5e-42 176.8 170 51.2
C08p51000 Brassica napus HOM05D004774 ORTHO05D005514 1.9e-42 176.4 177 48.0
Duzib211G0109 Durio zibethinus HOM05D004774 ORTHO05D005514 1.9e-42 176.4 177 49.7
MBI04_g06856_MAGBIO Magnolia biondii HOM05D004774 ORTHO05D005514 4.3e-42 175.3 168 54.2
FAN26G2874 Fragaria x ananassa HOM05D004774 ORTHO05D005514 1.3e-41 173.7 175 50.9
Ca_27275_v3 Cicer arietinum L. HOM05D004774 ORTHO05D005514 1.6e-41 173.3 158 55.7
PSO017G6900 Papaver somniferum HOM05D004774 ORTHO05D005514 1.6e-41 173.3 164 53.0
FvH4_1g22880 Fragaria vesca HOM05D004774 ORTHO05D005514 2.8e-41 172.6 175 49.7
FAN19G2773 Fragaria x ananassa HOM05D004774 ORTHO05D005514 4.8e-41 171.8 172 50.0
A09p66780 Brassica napus HOM05D004774 ORTHO05D005514 2.4e-40 169.5 171 47.4
SEGI_34955 Sequoiadendron giganteum HOM05D004774 ORTHO05D005514 6.9e-40 167.9 164 48.2
FAN23G2064 Fragaria x ananassa HOM05D004774 ORTHO05D005514 4.5e-39 165.2 182 47.8
Lj4A469T41 Lonicera japonica HOM05D004774 ORTHO05D005514 2.9e-38 162.5 132 62.1
Sc04g0000740 Simmondsia chinensis HOM05D004774 ORTHO05D005514 3.8e-38 162.2 164 50.6
Peaxi162Scf00934g00135 Petunia axillaris HOM05D004774 ORTHO05D005514 6.5e-38 161.4 164 50.6
SMO012G0037 Selaginella moellendorffii HOM05D004774 ORTHO05D005514 6.5e-38 161.4 165 50.9
BraA09t42016Z Brassica rapa HOM05D004774 ORTHO05D005514 4.2e-37 158.7 200 40.5
Os07g0477000 Oryza sativa ssp. japonica HOM05D004774 ORTHO05D005514 4.2e-37 158.7 165 47.9
PSO339G5528 Papaver somniferum HOM05D004774 ORTHO05D005514 4.6e-36 155.2 151 53.0
Pp3c7_17850 Physcomitrium patens HOM05D004774 ORTHO05D005514 3.9e-35 152.1 165 44.8
SHI09938 Sapria himalayana HOM05D004774 ORTHO05D000023 7.4e-34 147.9 114 61.4
Mapoly0050s0102 Marchantia polymorpha HOM05D004774 ORTHO05D005514 9.7e-34 147.5 166 41.6
BcaC07g42538 Brassica carinata HOM05D004774 ORTHO05D005514 9.0e-32 141.0 124 54.0
AagrBONN_evm.TU.Sc2ySwM_344.4376 Anthoceros agrestis HOM05D004774 ORTHO05D005514 1.5e-31 140.2 164 42.1
Aqoxy7G03987 Aquilegia oxysepala HOM05D004774 ORTHO05D005514 2.6e-31 139.4 98 65.3
TPR.G27929 Trifolium pratense HOM05D004774 ORTHO05D005514 1.4e-29 133.7 104 63.5
FAN21G2916 Fragaria x ananassa HOM05D004774 ORTHO05D005514 1.2e-28 130.6 101 62.4
SMO298G0040 Selaginella moellendorffii HOM05D004774 ORTHO05D005514 3.6e-28 129.0 165 44.8
arahy.Tifrunner.gnm1.ann1.KW6T12 Arachis hypogaea HOM05D004774 ORTHO05D005514 1.8e-27 126.7 94 64.9
Cre12.g538400 Chlamydomonas reinhardtii HOM05D004774 ORTHO05D005514 1.8e-27 126.7 173 36.4
CDE07G1842 Ceratophyllum demersum HOM05D004774 ORTHO05D005514 1.1e-26 124.0 91 65.9
Zm00001eb319960 Zea mays HOM05D004774 ORTHO05D005514 1.9e-26 123.2 117 52.1
ATR0665G644 Amborella trichopoda HOM05D004774 ORTHO05D005514 7.4e-26 121.3 98 60.2
GSVIVG01021945001 Vitis vinifera HOM05D004774 ORTHO05D005514 3.7e-25 119.0 98 63.3
CDE07G0321 Ceratophyllum demersum HOM05D004774 ORTHO05D005514 1.4e-24 117.1 178 41.0
MCO09G483 Micromonas commoda HOM05D004774 ORTHO05D005514 1.5e-23 113.6 165 37.6
FAN11G3419 Fragaria x ananassa HOM05D004774 ORTHO05D005514 1.7e-22 110.2 133 45.1
GSVIVG01021951001 Vitis vinifera HOM05D004774 ORTHO05D005514 1.1e-21 107.5 161 42.9
Haze_02362 Corylus avellana HOM05D004774 ORTHO05D005514 1.0e-19 100.9 70 65.7
Nn1g02575 Nelumbo nucifera HOM05D004774 ORTHO05D005514 3.0e-19 99.4 101 49.5
GSVIVG01000731001 Vitis vinifera HOM05D004774 ORTHO05D005514 3.9e-19 99.0 75 68.0
HanXRQChr14g0454071 Helianthus annuus HOM05D004774 ORTHO05D005514 1.3e-17 94.0 103 45.6
TPR.G27610 Trifolium pratense HOM05D004774 ORTHO05D005514 1.7e-17 93.6 69 68.1
GSVIVG01004486001 Vitis vinifera HOM05D004774 ORTHO05D005514 8.2e-17 91.3 70 58.6
TPR.G26057 Trifolium pratense HOM05D004774 ORTHO05D005514 2.2e-14 83.2 63 58.7
PGR119G0353 Punica granatum HOM05D004774 ORTHO05D005514 1.1e-13 80.9 107 40.2
SEGI_28935 Sequoiadendron giganteum HOM05D004774 ORTHO05D005514 9.4e-13 77.8 89 42.7
Lalb_Chr23g0275811 Lupinus albus HOM05D004774 ORTHO05D005514 3.3e-10 69.3 108 46.3
FvH4_3g35340 Fragaria vesca HOM05D004774 ORTHO05D005514 9.7e-10 67.8 95 38.9
BolC8t46832H Brassica oleracea HOM05D004774 ORTHO05D005514 2.8e-09 66.2 61 49.2
arahy.Tifrunner.gnm1.ann1.SKV00U Arachis hypogaea HOM05D004774 ORTHO05D005514 8.2e-09 64.7 72 38.9
FAN28G1675 Fragaria x ananassa HOM05D004774 ORTHO05D005514 9.1e-08 61.2 58 55.2
BolC1t02432H Brassica oleracea HOM05D004774 ORTHO05D033846 1.3e-06 57.4 49 55.1
C08p41270 Brassica napus HOM05D004774 ORTHO05D005514 2.9e-06 56.2 49 53.1


User provided reference genes

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