Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold42G16189 Striga asiatica HOM05D005087 ORTHO05D006427 0.0e+00 1264.2 657 100.0
SGA_v2.0_scaffold119G32758 Striga asiatica HOM05D005087 ORTHO05D006427 0.0e+00 1099.3 696 85.9
MSTRG.17010 Avicennia marina HOM05D005087 ORTHO05D006427 1.8e-258 896.0 679 71.1
Migut.B01270 Erythranthe guttata HOM05D005087 ORTHO05D006427 3.0e-250 868.6 673 69.8
SalBow5G0870 Salvia bowleyana HOM05D005087 ORTHO05D006427 6.1e-243 844.3 677 66.9
SalBow5G2001 Salvia bowleyana HOM05D005087 ORTHO05D006427 6.1e-243 844.3 677 66.9
Lj9C640G8 Lonicera japonica HOM05D005087 ORTHO05D006427 1.5e-228 796.6 679 63.2
CSS0029256 Camellia sinensis var. sinensis HOM05D005087 ORTHO05D006427 3.3e-228 795.4 673 63.0
Solyc01g087720.4 Solanum lycopersicum HOM05D005087 ORTHO05D006427 1.6e-219 766.5 673 60.0
Sopen01g034670 Solanum pennellii HOM05D005087 ORTHO05D006427 2.3e-218 762.7 673 59.9
Haze_03133 Corylus avellana HOM05D005087 ORTHO05D006427 1.9e-215 753.1 679 58.9
Haze_03136 Corylus avellana HOM05D005087 ORTHO05D006427 1.9e-215 753.1 679 58.9
CiPaw.14G002700 Carya illinoinensis HOM05D005087 ORTHO05D006427 5.4e-215 751.5 679 59.4
CsaV3_7G030750 Cucumis sativus L. HOM05D005087 ORTHO05D006427 2.0e-214 749.6 679 58.5
Cc02_g28540 Coffea canephora HOM05D005087 ORTHO05D006427 3.5e-214 748.8 673 58.2
QL04p009808 Quercus lobata HOM05D005087 ORTHO05D006427 1.0e-213 747.3 673 59.3
MELO3C023581.2 Cucumis melo HOM05D005087 ORTHO05D006427 9.5e-212 740.7 679 57.9
Rhsim01G0127000 Rhododendron simsii HOM05D005087 ORTHO05D006427 1.1e-210 737.3 678 59.6
Sed0026614 Sechium edule HOM05D005087 ORTHO05D006427 1.1e-210 737.3 679 57.6
Atru.chr11.2578 Acer truncatum HOM05D005087 ORTHO05D006427 4.0e-210 735.3 678 58.6
GSVIVG01032195001 Vitis vinifera HOM05D005087 ORTHO05D006427 4.4e-209 731.9 673 59.0
Prupe.2G022000 Prunus persica HOM05D005087 ORTHO05D006427 9.8e-209 730.7 670 58.1
TAR623G1255 Trochodendron aralioides HOM05D005087 ORTHO05D006427 1.1e-207 727.2 683 58.7
HanXRQChr01g0007751 Helianthus annuus HOM05D005087 ORTHO05D006427 2.7e-206 722.6 679 58.0
ECA248G2604 Erigeron canadensis HOM05D005087 ORTHO05D006427 3.5e-206 722.2 679 57.3
Peaxi162Scf00694g00319 Petunia axillaris HOM05D005087 ORTHO05D006427 3.5e-206 722.2 700 56.7
Thecc.05G218700 Theobroma cacao HOM05D005087 ORTHO05D006427 3.5e-206 722.2 673 57.2
Potri.001G262600 Populus trichocarpa HOM05D005087 ORTHO05D006427 7.8e-206 721.1 679 57.0
Nn7g36293 Nelumbo nucifera HOM05D005087 ORTHO05D006427 8.6e-205 717.6 679 56.8
Cpa.g.sc125.40 Carica papaya HOM05D005087 ORTHO05D006427 5.2e-202 708.4 679 56.6
Manes.10G136400 Manihot esculenta HOM05D005087 ORTHO05D006427 1.7e-200 703.4 670 56.4
Cfa022636 Carpinus fangiana HOM05D005087 ORTHO05D006427 2.4e-199 699.5 673 56.8
Thhalv10012535m.g Eutrema salsugineum HOM05D005087 ORTHO05D006427 7.1e-199 698.0 673 55.4
Dinv09311 Davidia involucrata HOM05D005087 ORTHO05D006427 9.2e-199 697.6 662 59.1
Duzib177G0717 Durio zibethinus HOM05D005087 ORTHO05D006427 1.6e-198 696.8 675 55.3
THA.LOC104819098 Tarenaya hassleriana HOM05D005087 ORTHO05D006427 2.7e-198 696.0 673 55.7
Carub.0006s1411 Capsella rubella HOM05D005087 ORTHO05D006427 2.3e-197 693.0 673 55.6
Eucgr.G03334 Eucalyptus grandis HOM05D005087 ORTHO05D006427 3.9e-197 692.2 681 54.5
Aqoxy1G00327 Aquilegia oxysepala HOM05D005087 ORTHO05D006427 8.6e-197 691.0 673 54.8
Gohir.D13G161900 Gossypium hirsutum HOM05D005087 ORTHO05D006427 5.6e-196 688.3 675 55.1
Gorai.013G183900 Gossypium raimondii HOM05D005087 ORTHO05D006427 5.6e-196 688.3 675 55.3
AL6G26800 Arabidopsis lyrata HOM05D005087 ORTHO05D006427 7.3e-196 688.0 673 55.3
Gohir.A13G157100 Gossypium hirsutum HOM05D005087 ORTHO05D006427 7.3e-196 688.0 675 55.4
AT5G15920 Arabidopsis thaliana HOM05D005087 ORTHO05D006427 3.6e-195 685.6 673 55.1
Ciclev10030582m.g Citrus clementina HOM05D005087 ORTHO05D006427 1.4e-194 683.7 679 55.5
Lju99A9T21 Lonicera japonica HOM05D005087 ORTHO05D006427 1.4e-194 683.7 664 58.4
TWI09G0473 Tripterygium wilfordii HOM05D005087 ORTHO05D006427 2.0e-193 679.9 680 53.7
RcHm_v2.0_Chr1g0317911 Rosa chinensis HOM05D005087 ORTHO05D006427 2.6e-193 679.5 679 54.5
BraA03t10076Z Brassica rapa HOM05D005087 ORTHO05D006427 3.4e-193 679.1 673 54.2
A03p07470 Brassica napus HOM05D005087 ORTHO05D006427 7.6e-193 677.9 673 54.2
MD07G1021900 Malus domestica HOM05D005087 ORTHO05D006427 7.6e-193 677.9 671 55.7
PGR031G1517 Punica granatum HOM05D005087 ORTHO05D006427 3.2e-191 672.5 672 55.8
Lalb_Chr04g0263871 Lupinus albus HOM05D005087 ORTHO05D006427 4.2e-191 672.2 671 53.9
FvH4_7g01640 Fragaria vesca HOM05D005087 ORTHO05D006427 6.0e-190 668.3 679 53.2
Aa31LG11G13680 Aethionema arabicum HOM05D005087 ORTHO05D006427 1.9e-188 663.3 698 52.3
VMungo0251G2588 Vigna mungo HOM05D005087 ORTHO05D006427 3.3e-188 662.5 678 53.8
ClCG09G004390 Citrullus lanatus HOM05D005087 ORTHO05D006427 9.6e-188 661.0 679 54.1
Phvul.002G285500 Phaseolus vulgaris HOM05D005087 ORTHO05D006427 9.6e-188 661.0 679 53.9
Glyma.20G198300 Glycine max HOM05D005087 ORTHO05D006427 8.1e-187 657.9 679 52.7
Medtr4g115050 Medicago truncatula HOM05D005087 ORTHO05D006427 1.1e-186 657.5 670 52.4
FAN06G3789 Fragaria x ananassa HOM05D005087 ORTHO05D006427 1.8e-186 656.8 685 52.6
CARHR197390 Cardamine hirsuta HOM05D005087 ORTHO05D006427 1.5e-185 653.7 673 52.9
CDE09G1121 Ceratophyllum demersum HOM05D005087 ORTHO05D006427 2.2e-184 649.8 673 52.9
BcaB01g05014 Brassica carinata HOM05D005087 ORTHO05D006427 1.9e-183 646.7 673 53.2
Lj3g0015731 Lotus japonicus HOM05D005087 ORTHO05D006427 1.9e-183 646.7 670 52.2
PSO339G3397 Papaver somniferum HOM05D005087 ORTHO05D006427 2.4e-183 646.4 680 53.4
DCAR_029700 Daucus carota HOM05D005087 ORTHO05D006427 3.5e-182 642.5 675 53.6
Medtr3g033470 Medicago truncatula HOM05D005087 ORTHO05D006427 3.5e-182 642.5 679 51.4
PSO210G7144 Papaver somniferum HOM05D005087 ORTHO05D006427 6.0e-182 641.7 670 51.6
EL10Ac2g04365 Beta vulgaris HOM05D005087 ORTHO05D006427 7.9e-182 641.3 711 50.8
Lsat_1_v5_gn_1_103161 Lactuca sativa HOM05D005087 ORTHO05D006427 1.0e-181 641.0 662 55.1
SEGI_29436 Sequoiadendron giganteum HOM05D005087 ORTHO05D006427 3.9e-181 639.0 673 51.3
Ca_14518_v3 Cicer arietinum L. HOM05D005087 ORTHO05D006427 6.7e-181 638.3 679 51.3
Hund09863 Selenicereus undatus HOM05D005087 ORTHO05D006427 6.7e-181 638.3 678 52.2
C03p08670 Brassica napus HOM05D005087 ORTHO05D006427 1.5e-180 637.1 673 52.0
BolC3t13367H Brassica oleracea HOM05D005087 ORTHO05D006427 1.5e-180 637.1 673 52.0
FAN03G0563 Fragaria x ananassa HOM05D005087 ORTHO05D006427 3.3e-180 636.0 679 51.5
Nitab4.5_0002388g0080 Nicotiana tabacum HOM05D005087 ORTHO05D006427 3.4e-177 625.9 569 58.5
Oeu049480.1 Olea europaea HOM05D005087 ORTHO05D006427 2.4e-175 619.8 772 50.5
Psat6g018320 Pisum sativum HOM05D005087 ORTHO05D006427 4.2e-175 619.0 679 50.1
Nitab4.5_0000707g0070 Nicotiana tabacum HOM05D005087 ORTHO05D006427 3.3e-172 609.4 557 58.5
Os05g0596600 Oryza sativa ssp. japonica HOM05D005087 ORTHO05D006427 7.4e-172 608.2 670 51.2
CANSAT80G0443 Cannabis sativa HOM05D005087 ORTHO05D006427 4.5e-169 599.0 670 49.9
FAN10G1149 Fragaria x ananassa HOM05D005087 ORTHO05D006427 5.8e-169 598.6 717 48.4
TPR.G14572 Trifolium pratense HOM05D005087 ORTHO05D006427 2.2e-168 596.7 715 47.1
Sp6g28190 Schrenkiella parvula HOM05D005087 ORTHO05D006427 1.2e-166 590.9 673 48.9
ATR0626G229 Amborella trichopoda HOM05D005087 ORTHO05D006427 2.1e-166 590.1 558 56.5
Sabra16G0161000 Salix brachista HOM05D005087 ORTHO05D006427 2.8e-163 579.7 611 53.4
arahy.Tifrunner.gnm1.ann1.1A5L99 Arachis hypogaea HOM05D005087 ORTHO05D006427 3.6e-158 562.8 650 48.9
AUR62023092 Chenopodium quinoa HOM05D005087 ORTHO05D006427 1.0e-157 561.2 646 49.7
Actinidia21541 Actinidia chinensis HOM05D005087 ORTHO05D006427 1.3e-157 560.8 488 61.7
arahy.Tifrunner.gnm1.ann1.JJ1LEU Arachis hypogaea HOM05D005087 ORTHO05D006427 3.9e-157 559.3 663 48.1
Sc10g0000340 Simmondsia chinensis HOM05D005087 ORTHO05D006427 2.5e-151 540.0 561 53.3
unitig_22.g5432 Utricularia gibba HOM05D005087 ORTHO05D006427 3.9e-149 532.7 491 58.7
Medtr5g036370 Medicago truncatula HOM05D005087 ORTHO05D006427 2.0e-145 520.4 679 44.3
AUR62009415 Chenopodium quinoa HOM05D005087 ORTHO05D006427 5.9e-145 518.8 626 48.7
SMO143G0265 Selaginella moellendorffii HOM05D005087 ORTHO05D006427 8.5e-144 515.0 670 44.3
Pp3c24_4940 Physcomitrium patens HOM05D005087 ORTHO05D006427 1.0e-141 508.1 673 42.9
Mapoly0007s0066 Marchantia polymorpha HOM05D005087 ORTHO05D006427 1.3e-139 501.1 663 43.4
Lj3g0013327 Lotus japonicus HOM05D005087 ORTHO05D006427 6.1e-134 482.3 662 44.6
CAN.G219.75 Capsicum annuum HOM05D005087 ORTHO05D006427 8.5e-128 461.8 474 53.0
Hma1.2p1_0685F.1_g203140 Hydrangea macrophylla HOM05D005087 ORTHO05D006427 1.1e-119 434.9 383 59.5
MBI11_g23277_MAGBIO Magnolia biondii HOM05D005087 ORTHO05D006427 3.5e-113 413.3 465 50.3
CBR_g88572 Chara braunii HOM05D005087 ORTHO05D000002 2.9e-107 393.7 668 36.7
HPP92_016894 Vanilla planifolia HOM05D005087 ORTHO05D006427 2.0e-105 387.5 506 45.7
Hma1.2p1_0685F.1_g203130 Hydrangea macrophylla HOM05D005087 ORTHO05D006427 6.0e-97 359.4 293 62.5
vmacro21195 Vaccinium macrocarpon HOM05D005087 ORTHO05D006427 4.0e-93 346.7 633 38.2
AagrBONN_evm.TU.Sc2ySwM_344.2054 Anthoceros agrestis HOM05D005087 ORTHO05D006427 1.3e-91 341.7 539 38.2
Hma1.2p1_0685F.1_g203150 Hydrangea macrophylla HOM05D005087 ORTHO05D006427 2.2e-83 314.3 272 63.2
Medtr5g036330 Medicago truncatula HOM05D005087 ORTHO05D006427 3.8e-67 260.4 238 58.0
SEGI_04619 Sequoiadendron giganteum HOM05D005087 ORTHO05D006427 3.9e-64 250.4 233 57.1
Zm00001eb225540 Zea mays HOM05D005087 ORTHO05D006427 8.7e-64 249.2 294 43.9
SHI04084 Sapria himalayana HOM05D005087 ORTHO05D006427 6.9e-61 239.6 201 63.2
Actinidia21540 Actinidia chinensis HOM05D005087 ORTHO05D006427 1.0e-56 225.7 175 66.9
PSO384G1020 Papaver somniferum HOM05D005087 ORTHO05D006427 2.8e-46 191.0 170 59.4
SHI04082 Sapria himalayana HOM05D005087 ORTHO05D006427 9.0e-45 186.0 221 45.7
MCO04G035 Micromonas commoda HOM05D005087 ORTHO05D006427 8.5e-43 179.5 657 26.6
PRCOL_00002930 Prasinoderma coloniale HOM05D005087 ORTHO05D006427 6.7e-40 169.9 653 24.3
SHI04083 Sapria himalayana HOM05D005087 ORTHO05D006427 3.3e-39 167.5 219 43.8
vmacro17464 Vaccinium macrocarpon HOM05D005087 ORTHO05D006427 2.6e-36 157.9 117 69.2
Cre10.g440200 Chlamydomonas reinhardtii HOM05D005087 ORTHO05D006427 1.8e-32 145.2 690 24.2
Nitab4.5_0000707g0060 Nicotiana tabacum HOM05D005087 ORTHO05D006427 1.7e-30 138.7 79 78.5
Medtr5g036300 Medicago truncatula HOM05D005087 ORTHO05D006427 1.7e-27 128.6 112 61.6
Nitab4.5_0002388g0090 Nicotiana tabacum HOM05D005087 ORTHO05D006427 1.6e-25 122.1 68 82.4
SEGI_40819 Sequoiadendron giganteum HOM05D000023 ORTHO05D000014 1.1e-23 115.9 120 47.5
Cre10.g440300 Chlamydomonas reinhardtii HOM05D005087 ORTHO05D006427 1.8e-21 108.6 658 22.9
FAN01G1492 Fragaria x ananassa HOM05D005087 ORTHO05D006427 6.7e-16 90.1 64 60.9
PSO384G4905 Papaver somniferum HOM05D000635 ORTHO05D000488 4.4e-15 87.4 68 69.1
HanXRQChr02g0047141 Helianthus annuus HOM05D005087 ORTHO05D038003 5.7e-15 87.0 81 56.8
Actinidia13978 Actinidia chinensis HOM05D005087 ORTHO05D006427 9.1e-13 79.7 126 42.9
Cfa027028 Carpinus fangiana HOM05D005087 ORTHO05D006427 9.1e-13 79.7 700 19.4
Actinidia20659 Actinidia chinensis HOM05D005087 ORTHO05D038003 3.6e-09 67.8 76 51.3
MBI11_g23279_MAGBIO Magnolia biondii HOM05D005087 ORTHO05D006427 7.5e-07 60.1 34 73.5


User provided reference genes

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