Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold40G15645 Striga asiatica HOM05D005418 ORTHO05D006724 7.6e-109 397.1 194 100.0
Migut.D01215 Erythranthe guttata HOM05D005418 ORTHO05D006724 7.9e-98 360.5 194 89.2
MSTRG.9356 Avicennia marina HOM05D005418 ORTHO05D006724 2.5e-96 355.5 194 89.2
unitig_899.g14817 Utricularia gibba HOM05D005418 ORTHO05D006724 3.3e-96 355.1 194 87.6
SalBow1G6390 Salvia bowleyana HOM05D005418 ORTHO05D006724 1.6e-95 352.8 194 87.6
Cc04_g09290 Coffea canephora HOM05D005418 ORTHO05D006724 8.5e-92 340.5 194 83.5
CSS0002924 Camellia sinensis var. sinensis HOM05D005418 ORTHO05D006724 2.5e-91 339.0 194 84.0
Peaxi162Scf00171g00918 Petunia axillaris HOM05D005418 ORTHO05D006724 2.5e-91 339.0 194 84.5
Solyc03g097990.3 Solanum lycopersicum HOM05D005418 ORTHO05D006724 9.4e-91 337.0 194 84.0
Sopen03g028700 Solanum pennellii HOM05D005418 ORTHO05D006724 9.4e-91 337.0 194 84.0
vmacro17855 Vaccinium macrocarpon HOM05D005418 ORTHO05D006724 1.2e-90 336.7 194 83.0
PGSC0003DMG400033680 Solanum tuberosum HOM05D005418 ORTHO05D006724 1.6e-90 336.3 194 84.0
CAN.G637.36 Capsicum annuum HOM05D005418 ORTHO05D006724 4.6e-90 334.7 194 83.0
RcHm_v2.0_Chr7g0177871 Rosa chinensis HOM05D005418 ORTHO05D006724 1.8e-89 332.8 194 83.5
COL.COLO4_07665 Corchorus olitorius HOM05D005418 ORTHO05D006724 3.9e-89 331.6 194 80.4
Ca_25975_v3 Cicer arietinum L. HOM05D005418 ORTHO05D006724 5.1e-89 331.3 194 80.4
TAR365G0064 Trochodendron aralioides HOM05D005418 ORTHO05D006724 8.8e-89 330.5 194 81.4
TPR.G14843 Trifolium pratense HOM05D005418 ORTHO05D006724 1.1e-88 330.1 194 82.0
FAN18G2901 Fragaria x ananassa HOM05D005418 ORTHO05D006724 1.5e-88 329.7 194 83.0
FAN08G1767 Fragaria x ananassa HOM05D005418 ORTHO05D006724 2.0e-88 329.3 194 82.5
Nitab4.5_0006110g0060 Nicotiana tabacum HOM05D005418 ORTHO05D006724 2.5e-88 328.9 214 76.6
FAN13G2408 Fragaria x ananassa HOM05D005418 ORTHO05D006724 3.3e-88 328.6 194 82.5
Nitab4.5_0000430g0100 Nicotiana tabacum HOM05D005418 ORTHO05D006724 3.3e-88 328.6 214 76.6
Aqoxy5G00519 Aquilegia oxysepala HOM05D005418 ORTHO05D006724 4.3e-88 328.2 194 81.4
CiPaw.15G148000 Carya illinoinensis HOM05D005418 ORTHO05D006724 5.7e-88 327.8 194 81.4
MD14G1240000 Malus domestica HOM05D005418 ORTHO05D006724 5.7e-88 327.8 194 81.4
Aqoxy6G02988 Aquilegia oxysepala HOM05D005418 ORTHO05D006724 7.4e-88 327.4 194 80.9
Cfa005619 Carpinus fangiana HOM05D005418 ORTHO05D006724 7.4e-88 327.4 194 80.4
arahy.Tifrunner.gnm1.ann1.20VKS9 Arachis hypogaea HOM05D005418 ORTHO05D006724 9.7e-88 327.0 194 79.4
PSO210G6190 Papaver somniferum HOM05D005418 ORTHO05D006724 1.3e-87 326.6 194 79.4
GSVIVG01037420001 Vitis vinifera HOM05D005418 ORTHO05D006724 1.7e-87 326.2 194 78.9
Lj2g0014184 Lotus japonicus HOM05D005418 ORTHO05D006724 3.7e-87 325.1 194 79.9
CsaV3_1G004910 Cucumis sativus L. HOM05D005418 ORTHO05D006724 4.8e-87 324.7 194 78.9
THA.LOC104812146 Tarenaya hassleriana HOM05D005418 ORTHO05D006724 1.1e-86 323.6 194 78.9
QL10p031782 Quercus lobata HOM05D005418 ORTHO05D006724 1.4e-86 323.2 193 79.3
Thecc.10G098100 Theobroma cacao HOM05D005418 ORTHO05D006724 1.4e-86 323.2 194 78.4
Cpa.g.sc64.48 Carica papaya HOM05D005418 ORTHO05D006724 1.8e-86 322.8 194 79.4
Gohir.A05G289300 Gossypium hirsutum HOM05D005418 ORTHO05D006724 1.8e-86 322.8 194 77.8
Gohir.D05G290700 Gossypium hirsutum HOM05D005418 ORTHO05D006724 1.8e-86 322.8 194 77.8
Gorai.009G305700 Gossypium raimondii HOM05D005418 ORTHO05D006724 1.8e-86 322.8 194 77.8
Actinidia09063 Actinidia chinensis HOM05D005418 ORTHO05D006724 2.4e-86 322.4 194 79.9
COL.COLO4_34153 Corchorus olitorius HOM05D005418 ORTHO05D006724 3.1e-86 322.0 194 77.8
MELO3C001923.2 Cucumis melo HOM05D005418 ORTHO05D006724 3.1e-86 322.0 194 78.4
Lalb_Chr22g0353611 Lupinus albus HOM05D005418 ORTHO05D006724 4.1e-86 321.6 194 78.9
Prupe.5G237600 Prunus persica HOM05D005418 ORTHO05D006724 4.1e-86 321.6 194 79.9
Hund01906 Selenicereus undatus HOM05D005418 ORTHO05D006724 4.1e-86 321.6 200 77.5
Duzib128G1895 Durio zibethinus HOM05D005418 ORTHO05D006724 6.9e-86 320.9 194 77.3
CARHR066900 Cardamine hirsuta HOM05D005418 ORTHO05D006724 9.1e-86 320.5 194 78.4
Potri.015G036600 Populus trichocarpa HOM05D005418 ORTHO05D006724 9.1e-86 320.5 194 78.9
AL2G33630 Arabidopsis lyrata HOM05D005418 ORTHO05D006724 1.2e-85 320.1 194 78.4
Psat1g028800 Pisum sativum HOM05D005418 ORTHO05D006724 1.2e-85 320.1 194 78.4
AT1G73820 Arabidopsis thaliana HOM05D005418 ORTHO05D006724 2.0e-85 319.3 194 78.4
Carub.0002s2057 Capsella rubella HOM05D005418 ORTHO05D006724 2.0e-85 319.3 194 78.4
Thhalv10019100m.g Eutrema salsugineum HOM05D005418 ORTHO05D006724 2.0e-85 319.3 194 78.4
HanXRQChr14g0431131 Helianthus annuus HOM05D005418 ORTHO05D006724 2.0e-85 319.3 194 79.9
Sp5g29010 Schrenkiella parvula HOM05D005418 ORTHO05D006724 2.0e-85 319.3 194 77.8
Nn1g06291 Nelumbo nucifera HOM05D005418 ORTHO05D006724 3.4e-85 318.5 194 76.8
Atru.chr9.1604 Acer truncatum HOM05D005418 ORTHO05D006724 5.9e-85 317.8 194 77.3
arahy.Tifrunner.gnm1.ann1.XQM4JL Arachis hypogaea HOM05D005418 ORTHO05D006724 5.9e-85 317.8 194 78.4
Glyma.07G106200 Glycine max HOM05D005418 ORTHO05D006724 5.9e-85 317.8 194 76.8
BcaC08g45620 Brassica carinata HOM05D005418 ORTHO05D006724 1.0e-84 317.0 194 78.4
A07p29640 Brassica napus HOM05D005418 ORTHO05D006724 1.0e-84 317.0 194 78.4
BraA07t30605Z Brassica rapa HOM05D005418 ORTHO05D006724 1.0e-84 317.0 194 78.4
Medtr0332s0040 Medicago truncatula HOM05D005418 ORTHO05D006724 1.3e-84 316.6 186 80.6
BcaB03g15730 Brassica carinata HOM05D005418 ORTHO05D006724 2.2e-84 315.8 194 77.8
CANSAT78G1374 Cannabis sativa HOM05D005418 ORTHO05D006724 2.2e-84 315.8 194 76.3
BolC6t38495H Brassica oleracea HOM05D005418 ORTHO05D006724 2.9e-84 315.5 194 77.8
Manes.06G002300 Manihot esculenta HOM05D005418 ORTHO05D006724 3.8e-84 315.1 194 77.8
TWI60G0409 Tripterygium wilfordii HOM05D005418 ORTHO05D006724 6.5e-84 314.3 194 76.8
Manes.14G173200 Manihot esculenta HOM05D005418 ORTHO05D006724 1.1e-83 313.5 194 76.8
C06p33820 Brassica napus HOM05D005418 ORTHO05D006724 1.4e-83 313.2 194 77.3
Sed0019275 Sechium edule HOM05D005418 ORTHO05D006724 1.9e-83 312.8 194 75.3
TWI15G1138 Tripterygium wilfordii HOM05D005418 ORTHO05D006724 3.2e-83 312.0 194 75.3
Actinidia06835 Actinidia chinensis HOM05D005418 ORTHO05D006724 4.2e-83 311.6 225 69.8
ClCG04G012830 Citrullus lanatus HOM05D005418 ORTHO05D006724 5.5e-83 311.2 214 71.0
Phvul.004G147300 Phaseolus vulgaris HOM05D005418 ORTHO05D006724 1.2e-82 310.1 194 75.8
ECA238G0283 Erigeron canadensis HOM05D005418 ORTHO05D006724 2.7e-82 308.9 188 78.2
Lsat_1_v5_gn_2_11960 Lactuca sativa HOM05D005418 ORTHO05D006724 2.7e-82 308.9 186 79.0
VMungo0464G1360 Vigna mungo HOM05D005418 ORTHO05D006724 4.7e-82 308.1 194 75.3
Ciclev10005966m.g Citrus clementina HOM05D005418 ORTHO05D006724 6.1e-82 307.8 194 75.8
SEGI_01195 Sequoiadendron giganteum HOM05D005418 ORTHO05D006724 1.0e-81 307.0 194 74.2
CDE12G0113 Ceratophyllum demersum HOM05D005418 ORTHO05D006724 3.0e-81 305.4 194 75.3
Aa31LG4G11570 Aethionema arabicum HOM05D005418 ORTHO05D006724 5.1e-81 304.7 175 81.7
PGR102G0744 Punica granatum HOM05D005418 ORTHO05D006724 8.8e-81 303.9 195 74.9
AUR62036432 Chenopodium quinoa HOM05D005418 ORTHO05D006724 1.5e-80 303.1 210 71.9
Sabra15G0030200 Salix brachista HOM05D005418 ORTHO05D006724 3.3e-80 302.0 235 65.5
Pp3c8_14260 Physcomitrium patens HOM05D005418 ORTHO05D006724 6.3e-79 297.7 194 72.7
Lj9C416T2 Lonicera japonica HOM05D005418 ORTHO05D006724 1.4e-78 296.6 194 76.3
Thhalv10019803m.g Eutrema salsugineum HOM05D005418 ORTHO05D006724 2.6e-77 292.4 194 74.2
SHI12596 Sapria himalayana HOM05D005418 ORTHO05D006724 3.5e-77 292.0 193 72.5
Pp3c23_19050 Physcomitrium patens HOM05D005418 ORTHO05D006724 4.5e-77 291.6 194 72.7
PSO832G3604 Papaver somniferum HOM05D005418 ORTHO05D006724 1.0e-76 290.4 194 72.7
ATR0827G099 Amborella trichopoda HOM05D005418 ORTHO05D006724 5.0e-76 288.1 178 75.3
Os12g0168200 Oryza sativa ssp. japonica HOM05D005418 ORTHO05D006724 8.5e-76 287.3 194 69.1
Mapoly0058s0033 Marchantia polymorpha HOM05D005418 ORTHO05D006724 1.9e-75 286.2 194 69.1
FvH4_5g17750 Fragaria vesca HOM05D005418 ORTHO05D006724 3.2e-75 285.4 161 86.3
SMO232G0125 Selaginella moellendorffii HOM05D005418 ORTHO05D006724 3.2e-75 285.4 195 68.2
MBI17_g10951_MAGBIO Magnolia biondii HOM05D005418 ORTHO05D006724 3.6e-74 282.0 174 77.0
MD06G1233000 Malus domestica HOM05D005418 ORTHO05D006724 4.7e-74 281.6 210 66.7
Zm00001eb139180 Zea mays HOM05D005418 ORTHO05D006724 8.0e-74 280.8 192 69.8
Rhsim08G0113500 Rhododendron simsii HOM05D005418 ORTHO05D006724 1.4e-73 280.0 274 56.6
DCAR_011383 Daucus carota HOM05D000073 ORTHO05D000033 2.3e-73 279.3 162 81.5
Sabra15G0031100 Salix brachista HOM05D005418 ORTHO05D006724 1.5e-72 276.6 297 51.5
HPP92_026203 Vanilla planifolia HOM05D005418 ORTHO05D006724 5.7e-72 274.6 160 81.2
CBR_g52356 Chara braunii HOM05D005418 ORTHO05D006724 2.4e-70 269.2 172 73.8
Hma1.2p1_0471F.1_g159370 Hydrangea macrophylla HOM05D005418 ORTHO05D006724 2.7e-69 265.8 283 53.0
Cre02.g145300 Chlamydomonas reinhardtii HOM05D005418 ORTHO05D006724 1.1e-54 217.2 178 56.7
Haze_15514 Corylus avellana HOM05D005418 ORTHO05D006724 1.1e-54 217.2 120 85.8
CDE11G0106 Ceratophyllum demersum HOM05D005418 ORTHO05D006724 4.1e-54 215.3 120 82.5
MBI17_g45323_MAGBIO Magnolia biondii HOM05D005418 ORTHO05D006724 5.4e-54 214.9 137 75.9
Pp3c24_6390 Physcomitrium patens HOM05D005418 ORTHO05D006724 5.0e-52 208.4 121 80.2
HPP92_016144 Vanilla planifolia HOM05D005418 ORTHO05D006724 1.5e-51 206.8 134 73.9
PRCOL_00006990 Prasinoderma coloniale HOM05D005418 ORTHO05D006724 1.2e-48 197.2 191 49.7
AUR62017076 Chenopodium quinoa HOM05D005418 ORTHO05D006724 9.8e-48 194.1 123 76.4
EL10Ac4g07599 Beta vulgaris HOM05D005418 ORTHO05D006724 1.8e-46 189.9 123 72.4
Dinv09076 Davidia involucrata HOM05D005418 ORTHO05D006724 2.0e-45 186.4 114 78.9
Thhalv10019340m.g Eutrema salsugineum HOM05D005418 ORTHO05D006724 2.1e-42 176.4 114 72.8
MCO08G311 Micromonas commoda HOM05D005418 ORTHO05D006724 4.7e-42 175.3 173 50.9
Sc12g0008750 Simmondsia chinensis HOM05D005418 ORTHO05D006724 2.0e-40 169.9 112 71.4
PGSC0003DMG400019995 Solanum tuberosum HOM05D005418 ORTHO05D006724 2.6e-40 169.5 99 80.8
Oeu036611.1 Olea europaea HOM05D005418 ORTHO05D006724 2.2e-39 166.4 89 91.0
CDE01G0467 Ceratophyllum demersum HOM05D005418 ORTHO05D006724 1.6e-37 160.2 93 80.6
AagrBONN_evm.TU.Sc2ySwM_344.1040 Anthoceros agrestis HOM05D005418 ORTHO05D006724 2.0e-37 159.8 122 60.7
Cfa023691 Carpinus fangiana HOM05D005418 ORTHO05D006724 5.0e-36 155.2 186 44.6
Ah.06g181320 Amaranthus hybridus HOM05D005418 ORTHO05D006724 1.2e-29 134.0 73 83.6
A07p39670 Brassica napus HOM05D005418 ORTHO05D006724 2.1e-29 133.3 88 75.0
BraA07t31516Z Brassica rapa HOM05D005418 ORTHO05D006724 2.1e-29 133.3 88 75.0
BcaC08g46801 Brassica carinata HOM05D005418 ORTHO05D006724 1.3e-28 130.6 73 82.2
C06p47960 Brassica napus HOM05D005418 ORTHO05D006724 1.3e-28 130.6 73 82.2
BolC6t39831H Brassica oleracea HOM05D005418 ORTHO05D006724 1.3e-28 130.6 73 82.2
EL10Ac4g07600 Beta vulgaris HOM05D005418 ORTHO05D006724 5.1e-28 128.6 76 76.3
Sc12g0008760 Simmondsia chinensis HOM05D005418 ORTHO05D006724 5.1e-28 128.6 71 81.7
Dinv09075 Davidia involucrata HOM05D005418 ORTHO05D006724 4.4e-24 115.5 64 81.2
COL.COLO4_32865 Corchorus olitorius HOM05D005418 ORTHO05D006724 4.3e-19 99.0 60 78.3
Eucgr.J01305 Eucalyptus grandis HOM05D005418 ORTHO05D006724 3.4e-16 89.4 74 59.5
COL.COLO4_34165 Corchorus olitorius HOM05D005418 ORTHO05D006724 1.2e-13 80.9 55 72.7
COL.COLO4_07708 Corchorus olitorius HOM05D005418 ORTHO05D006724 2.7e-13 79.7 94 47.9
Sabra15G0030300 Salix brachista HOM05D005418 ORTHO05D012650 1.5e-11 73.9 40 87.5
Eucgr.J01328 Eucalyptus grandis HOM05D005418 ORTHO05D006724 7.3e-11 71.6 83 48.2
Eucgr.J01334 Eucalyptus grandis HOM05D005418 ORTHO05D006724 7.3e-11 71.6 83 48.2
COL.COLO4_23669 Corchorus olitorius HOM05D005418 ORTHO05D158711 3.1e-09 66.2 56 58.9
MBI17_g40296_MAGBIO Magnolia biondii HOM05D005418 ORTHO05D006724 1.5e-08 63.9 91 40.7


User provided reference genes

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