Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold40G15643 Striga asiatica HOM05D002170 ORTHO05D007478 6.7e-99 364.0 181 100.0
SalBow5G3655 Salvia bowleyana HOM05D002170 ORTHO05D007478 3.3e-74 282.0 181 80.1
MSTRG.9351 Avicennia marina HOM05D002170 ORTHO05D007478 3.7e-73 278.5 181 79.0
CANSAT35G0706 Cannabis sativa HOM05D002170 ORTHO05D007478 4.1e-72 275.0 182 78.6
Lj9C416G6 Lonicera japonica HOM05D002170 ORTHO05D007478 7.0e-72 274.2 169 81.7
Duzib084G0411 Durio zibethinus HOM05D002170 ORTHO05D007478 4.5e-71 271.6 184 77.2
Eucgr.K02286 Eucalyptus grandis HOM05D002170 ORTHO05D007478 5.9e-71 271.2 186 78.0
MD06G1232500 Malus domestica HOM05D002170 ORTHO05D007478 1.7e-70 269.6 182 78.0
Nitab4.5_0006581g0020 Nicotiana tabacum HOM05D002170 ORTHO05D007478 2.2e-70 269.2 186 75.3
Migut.D01219 Erythranthe guttata HOM05D002170 ORTHO05D007478 3.8e-70 268.5 181 78.5
Thecc.03G062200 Theobroma cacao HOM05D002170 ORTHO05D007478 5.0e-70 268.1 184 77.2
CSS0009402 Camellia sinensis var. sinensis HOM05D002170 ORTHO05D007478 8.5e-70 267.3 181 75.7
CSS0042449 Camellia sinensis var. sinensis HOM05D002170 ORTHO05D007478 8.5e-70 267.3 181 75.7
DCAR_003532 Daucus carota HOM05D002170 ORTHO05D007478 8.5e-70 267.3 171 77.2
FvH4_5g17680 Fragaria vesca HOM05D002170 ORTHO05D007478 8.5e-70 267.3 189 76.2
FAN08G0558 Fragaria x ananassa HOM05D002170 ORTHO05D007478 8.5e-70 267.3 189 76.2
FAN18G3495 Fragaria x ananassa HOM05D002170 ORTHO05D007478 8.5e-70 267.3 189 76.2
Nitab4.5_0000430g0180 Nicotiana tabacum HOM05D002170 ORTHO05D007478 8.5e-70 267.3 187 74.3
PGSC0003DMG400033683 Solanum tuberosum HOM05D002170 ORTHO05D007478 8.5e-70 267.3 187 75.9
MELO3C002149.2 Cucumis melo HOM05D002170 ORTHO05D007478 2.5e-69 265.8 182 76.9
Glyma.07G105400 Glycine max HOM05D002170 ORTHO05D007478 2.5e-69 265.8 151 86.8
MBI19_g09384_MAGBIO Magnolia biondii HOM05D003263 ORTHO05D004801 2.5e-69 265.8 184 75.5
TAR629G0118 Trochodendron aralioides HOM05D002170 ORTHO05D007478 2.5e-69 265.8 183 76.5
CiPaw.16G097200 Carya illinoinensis HOM05D002170 ORTHO05D007478 3.2e-69 265.4 182 76.9
FAN04G0031 Fragaria x ananassa HOM05D002170 ORTHO05D007478 3.2e-69 265.4 189 75.1
Sopen03g028630 Solanum pennellii HOM05D002170 ORTHO05D007478 3.2e-69 265.4 187 74.9
Solyc03g097910.4 Solanum lycopersicum HOM05D002170 ORTHO05D007478 5.5e-69 264.6 187 74.9
Haze_18913 Corylus avellana HOM05D002170 ORTHO05D007478 7.2e-69 264.2 183 77.0
Phvul.004G148000 Phaseolus vulgaris HOM05D002170 ORTHO05D007478 9.4e-69 263.8 153 85.0
ClCG04G010450 Citrullus lanatus HOM05D002170 ORTHO05D007478 1.6e-68 263.1 150 86.7
Prupe.5G236800 Prunus persica HOM05D002170 ORTHO05D007478 1.6e-68 263.1 184 75.5
TPR.G22320 Trifolium pratense HOM05D002170 ORTHO05D007478 1.6e-68 263.1 150 86.7
Hma1.2p1_0471F.1_g159440 Hydrangea macrophylla HOM05D002170 ORTHO05D007478 2.1e-68 262.7 182 75.8
MD14G1239300 Malus domestica HOM05D002170 ORTHO05D007478 2.1e-68 262.7 183 75.4
RcHm_v2.0_Chr7g0177971 Rosa chinensis HOM05D002170 ORTHO05D007478 2.1e-68 262.7 185 76.2
Lj2g0009559 Lotus japonicus HOM05D002170 ORTHO05D007478 2.7e-68 262.3 188 74.5
Atru.chr9.1597 Acer truncatum HOM05D002170 ORTHO05D007478 3.6e-68 261.9 184 76.1
PSO339G1858 Papaver somniferum HOM05D002170 ORTHO05D007478 3.6e-68 261.9 172 76.7
Ca_25357_v3 Cicer arietinum L. HOM05D002170 ORTHO05D007478 4.7e-68 261.5 151 84.8
COL.COLO4_18962 Corchorus olitorius HOM05D002170 ORTHO05D005003 4.7e-68 261.5 149 86.6
Dinv05998 Davidia involucrata HOM05D002170 ORTHO05D007478 4.7e-68 261.5 169 78.1
Duzib068G1477 Durio zibethinus HOM05D002170 ORTHO05D007478 4.7e-68 261.5 157 82.8
THA.LOC104820334 Tarenaya hassleriana HOM05D002170 ORTHO05D007478 4.7e-68 261.5 169 78.7
arahy.Tifrunner.gnm1.ann1.DTQ5EB Arachis hypogaea HOM05D002170 ORTHO05D007478 6.1e-68 261.2 152 85.5
Cfa020634 Carpinus fangiana HOM05D002170 ORTHO05D007478 6.1e-68 261.2 183 76.0
HanXRQChr15g0492101 Helianthus annuus HOM05D002170 ORTHO05D007478 6.1e-68 261.2 183 76.5
Psat1g029560 Pisum sativum HOM05D002170 ORTHO05D007478 6.1e-68 261.2 183 73.8
CsaV3_1G007330 Cucumis sativus L. HOM05D002170 ORTHO05D007478 1.4e-67 260.0 182 76.4
Sc04g0004500 Simmondsia chinensis HOM05D002170 ORTHO05D007478 1.4e-67 260.0 183 75.4
CAN.G637.44 Capsicum annuum HOM05D002170 ORTHO05D007478 1.8e-67 259.6 189 74.1
Cpa.g.sc3.360 Carica papaya HOM05D002170 ORTHO05D007478 1.8e-67 259.6 182 74.2
Ciclev10020301m.g Citrus clementina HOM05D002170 ORTHO05D007478 1.8e-67 259.6 182 74.7
PSO384G2182 Papaver somniferum HOM05D002170 ORTHO05D007478 1.8e-67 259.6 172 76.2
arahy.Tifrunner.gnm1.ann1.U6RNCV Arachis hypogaea HOM05D002170 ORTHO05D007478 2.3e-67 259.2 152 85.5
ECA232G0406 Erigeron canadensis HOM05D002170 ORTHO05D007478 2.3e-67 259.2 175 76.0
Gohir.A09G175200 Gossypium hirsutum HOM05D002170 ORTHO05D007478 2.3e-67 259.2 182 73.6
Gohir.D09G169700 Gossypium hirsutum HOM05D002170 ORTHO05D007478 2.3e-67 259.2 182 73.6
Gorai.006G191200 Gossypium raimondii HOM05D002170 ORTHO05D007478 2.3e-67 259.2 182 73.6
Sed0008892 Sechium edule HOM05D002170 ORTHO05D007478 3.0e-67 258.8 159 83.0
Sabra15G0025500 Salix brachista HOM05D002170 ORTHO05D007478 3.9e-67 258.5 185 75.1
Actinidia09052 Actinidia chinensis HOM05D002170 ORTHO05D007478 5.2e-67 258.1 181 75.7
Medtr6g071210 Medicago truncatula HOM05D002170 ORTHO05D007478 5.2e-67 258.1 152 83.6
Peaxi162Scf00171g01030 Petunia axillaris HOM05D002170 ORTHO05D007478 5.2e-67 258.1 183 74.3
Rhsim08G0127800 Rhododendron simsii HOM05D002170 ORTHO05D007478 5.2e-67 258.1 185 73.5
Aqoxy3G04073 Aquilegia oxysepala HOM05D002170 ORTHO05D007478 8.8e-67 257.3 186 74.2
Glyma.09G172700 Glycine max HOM05D002170 ORTHO05D007478 8.8e-67 257.3 151 84.8
Potri.015G030600 Populus trichocarpa HOM05D002170 ORTHO05D007478 1.1e-66 256.9 185 74.6
CDE06G2490 Ceratophyllum demersum HOM05D002170 ORTHO05D007478 2.0e-66 256.1 149 81.9
AUR62041617 Chenopodium quinoa HOM05D002170 ORTHO05D007478 2.6e-66 255.8 184 72.3
HanXRQChr16g0511571 Helianthus annuus HOM05D002170 ORTHO05D007478 2.6e-66 255.8 182 74.2
QL10p031496 Quercus lobata HOM05D002170 ORTHO05D007478 2.6e-66 255.8 183 74.3
Ah.16g108010 Amaranthus hybridus HOM05D002170 ORTHO05D007478 3.3e-66 255.4 183 74.9
Oeu023513.1 Olea europaea HOM05D002170 ORTHO05D007478 4.4e-66 255.0 188 72.9
Lalb_Chr22g0353421 Lupinus albus HOM05D002170 ORTHO05D007478 7.4e-66 254.2 151 83.4
PGR044G0130 Punica granatum HOM05D002170 ORTHO05D007478 1.3e-65 253.4 185 75.1
Carub.0003s1752 Capsella rubella HOM05D002170 ORTHO05D007478 1.7e-65 253.1 161 80.7
Lsat_1_v5_gn_0_10461 Lactuca sativa HOM05D002170 ORTHO05D007478 1.7e-65 253.1 182 73.1
Lalb_Chr14g0370711 Lupinus albus HOM05D002170 ORTHO05D007478 2.2e-65 252.7 187 73.8
vmacro17769 Vaccinium macrocarpon HOM05D002170 ORTHO05D007478 2.8e-65 252.3 146 84.2
EL10Ac2g03531 Beta vulgaris HOM05D002170 ORTHO05D007478 3.7e-65 251.9 181 71.3
Sp3g15930 Schrenkiella parvula HOM05D002170 ORTHO05D007478 4.8e-65 251.5 157 80.3
CARHR093160 Cardamine hirsuta HOM05D002170 ORTHO05D007478 6.3e-65 251.1 160 80.0
Thhalv10020777m.g Eutrema salsugineum HOM05D002170 ORTHO05D007478 6.3e-65 251.1 179 74.9
Hund22449 Selenicereus undatus HOM05D002170 ORTHO05D007478 6.3e-65 251.1 183 71.6
TWI81G0098 Tripterygium wilfordii HOM05D002170 ORTHO05D007478 8.2e-65 250.8 182 73.1
Aa31LG8G4690 Aethionema arabicum HOM05D002170 ORTHO05D007478 1.1e-64 250.4 148 84.5
BraA05t22032Z Brassica rapa HOM05D002170 ORTHO05D007478 1.4e-64 250.0 151 81.5
Zm00001eb253890 Zea mays HOM05D002170 ORTHO05D007478 1.8e-64 249.6 163 77.9
A05p32010 Brassica napus HOM05D002170 ORTHO05D007478 2.4e-64 249.2 151 81.5
Manes.06G002900 Manihot esculenta HOM05D002170 ORTHO05D007478 3.1e-64 248.8 133 91.0
AL3G30970 Arabidopsis lyrata HOM05D002170 ORTHO05D007478 7.0e-64 247.7 171 75.4
AT3G17810 Arabidopsis thaliana HOM05D002170 ORTHO05D007478 7.0e-64 247.7 171 74.9
C05p48530 Brassica napus HOM05D002170 ORTHO05D007478 7.0e-64 247.7 151 80.8
BolC5t33589H Brassica oleracea HOM05D002170 ORTHO05D007478 1.2e-63 246.9 151 80.8
SEGI_10571 Sequoiadendron giganteum HOM05D002170 ORTHO05D007478 1.2e-63 246.9 156 78.2
Atru.BG.197.p Acer truncatum HOM05D002170 ORTHO05D007478 2.0e-63 246.1 133 89.5
Cc04_g09360 Coffea canephora HOM05D002170 ORTHO05D007478 3.5e-63 245.4 189 72.5
Os02g0736400 Oryza sativa ssp. japonica HOM05D002170 ORTHO05D007478 1.3e-62 243.4 181 70.7
BcaNung05883 Brassica carinata HOM05D002170 ORTHO05D007478 5.0e-62 241.5 161 78.3
ATR0118G019 Amborella trichopoda HOM05D002170 ORTHO05D007478 6.5e-62 241.1 178 69.7
BcaC09g48741 Brassica carinata HOM05D002170 ORTHO05D007478 8.5e-62 240.7 157 79.6
A01p36570 Brassica napus HOM05D002170 ORTHO05D007478 8.5e-62 240.7 148 81.8
BraA01t03721Z Brassica rapa HOM05D002170 ORTHO05D007478 8.5e-62 240.7 149 81.2
BcaB04g18965 Brassica carinata HOM05D002170 ORTHO05D007478 2.5e-61 239.2 159 78.0
BcaB04g20814 Brassica carinata HOM05D002170 ORTHO05D007478 2.5e-61 239.2 150 80.0
C01p46400 Brassica napus HOM05D002170 ORTHO05D007478 4.2e-61 238.4 157 79.0
BolC1t04600H Brassica oleracea HOM05D002170 ORTHO05D007478 4.2e-61 238.4 157 79.0
CiPaw.15G147300 Carya illinoinensis HOM05D002170 ORTHO05D007478 5.2e-59 231.5 122 91.8
HPP92_007961 Vanilla planifolia HOM05D002170 ORTHO05D007478 6.7e-59 231.1 132 84.1
GSVIVG01008478001 Vitis vinifera HOM05D002170 ORTHO05D007478 1.5e-58 229.9 122 91.0
Pp3c20_21870 Physcomitrium patens HOM05D002170 ORTHO05D007478 2.6e-58 229.2 173 68.2
SHI19063 Sapria himalayana HOM05D002170 ORTHO05D007478 2.6e-58 229.2 133 81.2
AagrBONN_evm.TU.Sc2ySwM_362.1270 Anthoceros agrestis HOM05D002170 ORTHO05D007478 7.5e-58 227.6 188 61.7
Mapoly0033s0018 Marchantia polymorpha HOM05D002170 ORTHO05D007478 2.4e-56 222.6 168 66.7
Pp3c23_13670 Physcomitrium patens HOM05D002170 ORTHO05D007478 3.1e-56 222.2 173 65.9
AUR62036004 Chenopodium quinoa HOM05D002170 ORTHO05D007478 1.6e-55 219.9 122 86.9
SMO356G0689 Selaginella moellendorffii HOM05D002170 ORTHO05D007478 9.4e-53 210.7 136 73.5
CBR_g39071 Chara braunii HOM05D002170 ORTHO05D007478 1.8e-51 206.5 138 70.3
MCO10G163 Micromonas commoda HOM05D002170 ORTHO05D007478 1.5e-50 203.4 137 72.3
Cre13.g578750 Chlamydomonas reinhardtii HOM05D002170 ORTHO05D007478 3.7e-49 198.7 135 68.9
PRCOL_00005290 Prasinoderma coloniale HOM05D002170 ORTHO05D007478 7.7e-47 191.0 122 73.8
BcaC01g03730 Brassica carinata HOM05D002170 ORTHO05D007478 1.3e-46 190.3 140 69.3
CDE04G1365 Ceratophyllum demersum HOM05D002170 ORTHO05D007478 1.3e-41 173.7 149 59.7
Oeu016182.1 Olea europaea HOM05D002170 ORTHO05D007478 8.3e-33 144.4 120 63.3
Solyc02g044040.3 Solanum lycopersicum HOM05D002170 ORTHO05D390875 3.0e-30 136.0 81 80.2
unitig_27.g25081 Utricularia gibba HOM05D002170 ORTHO05D007478 1.4e-24 117.1 101 61.4
C03p49210 Brassica napus HOM05D002170 ORTHO05D007478 8.9e-19 97.8 98 53.1
Haze_26546 Corylus avellana HOM05D002170 ORTHO05D007478 8.9e-19 97.8 132 38.6
Haze_27328 Corylus avellana HOM05D002170 ORTHO05D007478 3.4e-18 95.9 132 37.1
MD05G1052900 Malus domestica HOM05D002170 ORTHO05D000222 4.6e-15 85.5 56 76.8
unitig_27.g25082 Utricularia gibba HOM05D002170 ORTHO05D007478 9.6e-13 77.8 42 90.5
BolC3t17203H Brassica oleracea HOM05D002170 ORTHO05D007478 2.4e-08 63.2 34 85.3


User provided reference genes

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