Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold40G15470 Striga asiatica HOM05D004689 ORTHO05D006269 1.1e-177 626.7 361 100.0
Peaxi162Scf00407g00631 Petunia axillaris HOM05D004689 ORTHO05D006269 8.3e-133 477.6 347 80.1
PGSC0003DMG400003874 Solanum tuberosum HOM05D004689 ORTHO05D006269 1.3e-130 470.3 349 81.9
MSTRG.19190 Avicennia marina HOM05D004689 ORTHO05D006269 1.6e-128 463.4 349 82.5
TAR369G0565 Trochodendron aralioides HOM05D004689 ORTHO05D006269 2.6e-126 456.1 358 78.8
TAR633G1835 Trochodendron aralioides HOM05D004689 ORTHO05D006269 9.8e-126 454.1 358 78.8
FAN14G4883 Fragaria x ananassa HOM05D004689 ORTHO05D006269 2.0e-123 446.4 347 72.6
Oeu042111.1 Olea europaea HOM05D004689 ORTHO05D006269 2.0e-123 446.4 358 75.1
Nn6g35217 Nelumbo nucifera HOM05D004689 ORTHO05D006269 2.9e-122 442.6 342 75.4
Sopen09g003300 Solanum pennellii HOM05D004689 ORTHO05D006269 5.0e-122 441.8 357 77.9
EL10Ac7g16690 Beta vulgaris HOM05D004689 ORTHO05D006269 1.1e-121 440.7 345 78.3
FAN02G2373 Fragaria x ananassa HOM05D004689 ORTHO05D006269 1.9e-121 439.9 348 73.0
Cfa021476 Carpinus fangiana HOM05D004689 ORTHO05D006269 9.5e-121 437.6 349 79.4
Potri.006G121300 Populus trichocarpa HOM05D004689 ORTHO05D006269 9.5e-121 437.6 343 80.5
Phvul.005G180000 Phaseolus vulgaris HOM05D004689 ORTHO05D006269 2.1e-120 436.4 259 85.7
Potri.016G097600 Populus trichocarpa HOM05D004689 ORTHO05D006269 2.8e-120 436.0 345 76.8
arahy.Tifrunner.gnm1.ann1.0YCB9L Arachis hypogaea HOM05D004689 ORTHO05D006269 3.6e-120 435.6 259 85.3
arahy.Tifrunner.gnm1.ann1.98D3Z3 Arachis hypogaea HOM05D004689 ORTHO05D006269 3.6e-120 435.6 259 85.3
CSS0004382 Camellia sinensis var. sinensis HOM05D004689 ORTHO05D006269 3.6e-120 435.6 239 91.6
CSS0024828 Camellia sinensis var. sinensis HOM05D004689 ORTHO05D006269 3.6e-120 435.6 239 91.6
Migut.J00456 Erythranthe guttata HOM05D004689 ORTHO05D006269 3.6e-120 435.6 336 76.8
DCAR_020804 Daucus carota HOM05D004689 ORTHO05D006269 8.0e-120 434.5 341 80.1
Actinidia32476 Actinidia chinensis HOM05D004689 ORTHO05D006269 1.0e-119 434.1 240 91.2
Lalb_Chr04g0254861 Lupinus albus HOM05D004689 ORTHO05D006269 1.0e-119 434.1 256 85.9
PSO675G8307 Papaver somniferum HOM05D004689 ORTHO05D006269 1.0e-119 434.1 334 76.3
CANSAT80G2663 Cannabis sativa HOM05D004689 ORTHO05D006269 1.4e-119 433.7 240 90.0
FAN05G0091 Fragaria x ananassa HOM05D004689 ORTHO05D006269 1.8e-119 433.3 368 70.1
FAN05G3347 Fragaria x ananassa HOM05D004689 ORTHO05D006269 1.8e-119 433.3 368 69.8
MD12G1106500 Malus domestica HOM05D004689 ORTHO05D006269 2.3e-119 433.0 349 77.4
VMungo0917G0001 Vigna mungo HOM05D004689 ORTHO05D006269 2.3e-119 433.0 259 86.1
Glyma.13G367400 Glycine max HOM05D004689 ORTHO05D006269 3.0e-119 432.6 245 88.6
Atru.chr8.1747 Acer truncatum HOM05D004689 ORTHO05D006269 4.0e-119 432.2 368 75.0
Ca_23152_v3 Cicer arietinum L. HOM05D004689 ORTHO05D006269 5.2e-119 431.8 249 86.7
GSVIVG01033687001 Vitis vinifera HOM05D004689 ORTHO05D006269 5.2e-119 431.8 233 91.4
Duzib128G1555 Durio zibethinus HOM05D004689 ORTHO05D006269 6.8e-119 431.4 343 74.3
Lalb_Chr10g0099851 Lupinus albus HOM05D004689 ORTHO05D006269 8.9e-119 431.0 244 87.7
Lj3g0015942 Lotus japonicus HOM05D004689 ORTHO05D006269 1.5e-118 430.3 245 87.3
Hund19382 Selenicereus undatus HOM05D004689 ORTHO05D006269 1.5e-118 430.3 335 79.7
unitig_26.g9238 Utricularia gibba HOM05D004689 ORTHO05D006269 1.5e-118 430.3 239 89.1
CDE06G0795 Ceratophyllum demersum HOM05D004689 ORTHO05D006269 2.6e-118 429.5 245 88.2
AUR62026953 Chenopodium quinoa HOM05D004689 ORTHO05D006269 3.4e-118 429.1 239 90.0
Solyc09g008470.4 Solanum lycopersicum HOM05D004689 ORTHO05D006269 3.4e-118 429.1 357 76.2
CsaV3_3G036230 Cucumis sativus L. HOM05D004689 ORTHO05D006269 4.4e-118 428.7 344 80.8
ECA238G3499 Erigeron canadensis HOM05D004689 ORTHO05D006269 4.4e-118 428.7 232 90.5
Sed0022535 Sechium edule HOM05D004689 ORTHO05D006269 4.4e-118 428.7 327 80.7
CDE03G0163 Ceratophyllum demersum HOM05D004689 ORTHO05D006269 7.5e-118 427.9 244 88.5
Ah.15g091430 Amaranthus hybridus HOM05D004689 ORTHO05D006269 9.8e-118 427.6 239 89.5
Nitab4.5_0003314g0100 Nicotiana tabacum HOM05D004689 ORTHO05D006269 9.8e-118 427.6 358 76.3
Medtr8g009970 Medicago truncatula HOM05D004689 ORTHO05D006269 1.3e-117 427.2 330 74.8
TPR.G17360 Trifolium pratense HOM05D004689 ORTHO05D006269 1.7e-117 426.8 240 87.9
Glyma.15G005900 Glycine max HOM05D004689 ORTHO05D006269 2.9e-117 426.0 260 83.8
Sc20g0005690 Simmondsia chinensis HOM05D004689 ORTHO05D006269 3.7e-117 425.6 242 87.2
Prupe.7G125300 Prunus persica HOM05D004689 ORTHO05D006269 6.4e-117 424.9 333 79.9
TWI74G0641 Tripterygium wilfordii HOM05D004689 ORTHO05D006269 6.4e-117 424.9 351 73.2
FAN09G4523 Fragaria x ananassa HOM05D004689 ORTHO05D006269 8.3e-117 424.5 364 74.5
QL03p020097 Quercus lobata HOM05D004689 ORTHO05D006269 1.1e-116 424.1 348 75.3
Ah.08g211440 Amaranthus hybridus HOM05D004689 ORTHO05D006269 1.4e-116 423.7 340 78.5
CiPaw.10G001700 Carya illinoinensis HOM05D004689 ORTHO05D006269 1.4e-116 423.7 259 83.8
PSO541G4270 Papaver somniferum HOM05D004689 ORTHO05D006269 1.4e-116 423.7 334 75.1
MELO3C009381.2 Cucumis melo HOM05D004689 ORTHO05D006269 3.2e-116 422.5 353 78.8
Lsat_1_v5_gn_1_52460 Lactuca sativa HOM05D004689 ORTHO05D006269 4.1e-116 422.2 233 90.1
Ciclev10012150m.g Citrus clementina HOM05D004689 ORTHO05D006269 2.7e-115 419.5 344 77.6
RcHm_v2.0_Chr3g0470901 Rosa chinensis HOM05D004689 ORTHO05D006269 2.7e-115 419.5 349 76.2
RcHm_v2.0_Chr7g0191101 Rosa chinensis HOM05D004689 ORTHO05D006269 7.8e-115 417.9 359 68.8
Thecc.05G071600 Theobroma cacao HOM05D004689 ORTHO05D006269 7.8e-115 417.9 355 73.2
Thecc.05G071900 Theobroma cacao HOM05D004689 ORTHO05D006269 7.8e-115 417.9 355 73.5
PGR119G0162 Punica granatum HOM05D004689 ORTHO05D006269 1.0e-114 417.5 340 70.3
Gohir.D09G140400 Gossypium hirsutum HOM05D004689 ORTHO05D006269 1.7e-114 416.8 359 73.0
Gorai.006G161000 Gossypium raimondii HOM05D004689 ORTHO05D006269 1.7e-114 416.8 359 73.0
Hma1.2p1_0225F.1_g095000 Hydrangea macrophylla HOM05D004689 ORTHO05D006269 1.7e-114 416.8 330 77.0
HanXRQChr13g0402661 Helianthus annuus HOM05D004689 ORTHO05D006269 3.9e-114 415.6 221 91.4
RhsimUnG0004400 Rhododendron simsii HOM05D004689 ORTHO05D006269 5.0e-114 415.2 242 88.4
RhsimUnG0067800 Rhododendron simsii HOM05D004689 ORTHO05D006269 5.0e-114 415.2 242 88.4
Aqoxy2G01650 Aquilegia oxysepala HOM05D004689 ORTHO05D006269 6.6e-114 414.8 221 91.0
Gohir.A09G144600 Gossypium hirsutum HOM05D004689 ORTHO05D006269 1.5e-113 413.7 359 72.7
Aa31LG5G4730 Aethionema arabicum HOM05D004689 ORTHO05D006269 1.9e-113 413.3 227 88.5
Eucgr.K02436 Eucalyptus grandis HOM05D004689 ORTHO05D006269 9.5e-113 411.0 329 75.4
THA.LOC104816037 Tarenaya hassleriana HOM05D004689 ORTHO05D006269 9.5e-113 411.0 225 88.4
Cc06_g04560 Coffea canephora HOM05D004689 ORTHO05D006269 1.2e-112 410.6 423 63.1
CARHR126450 Cardamine hirsuta HOM05D004689 ORTHO05D006269 4.7e-112 408.7 228 87.3
ClCG10G019870 Citrullus lanatus HOM05D004689 ORTHO05D006269 8.0e-112 407.9 368 75.5
Sabra06G0095500 Salix brachista HOM05D004689 ORTHO05D006269 8.0e-112 407.9 422 62.3
COL.COLO4_26909 Corchorus olitorius HOM05D004689 ORTHO05D006269 2.6e-110 402.9 354 72.3
AL4G28000 Arabidopsis lyrata HOM05D004689 ORTHO05D006269 5.8e-110 401.7 228 86.0
C04p17070 Brassica napus HOM05D004689 ORTHO05D006269 7.5e-110 401.4 231 84.0
BolC4t23259H Brassica oleracea HOM05D004689 ORTHO05D006269 7.5e-110 401.4 231 84.0
AT2G32600 Arabidopsis thaliana HOM05D004689 ORTHO05D006269 9.8e-110 401.0 228 86.0
A05p13300 Brassica napus HOM05D004689 ORTHO05D006269 9.8e-110 401.0 231 84.0
BraA05t20271Z Brassica rapa HOM05D004689 ORTHO05D006269 9.8e-110 401.0 231 84.0
Sp4g14930 Schrenkiella parvula HOM05D004689 ORTHO05D006269 3.7e-109 399.1 235 84.3
Carub.0004s1393 Capsella rubella HOM05D004689 ORTHO05D006269 4.9e-109 398.7 242 82.2
Thhalv10017051m.g Eutrema salsugineum HOM05D004689 ORTHO05D006269 8.3e-109 397.9 220 87.7
Lj3C990G15 Lonicera japonica HOM05D004689 ORTHO05D006269 1.1e-108 397.5 209 91.9
HPP92_017214 Vanilla planifolia HOM05D004689 ORTHO05D006269 3.2e-108 396.0 232 83.6
Pp3c15_8160 Physcomitrium patens HOM05D004689 ORTHO05D006269 1.7e-106 390.2 233 82.8
Zm00001eb398100 Zea mays HOM05D004689 ORTHO05D006269 1.7e-106 390.2 244 80.7
AagrBONN_evm.TU.Sc2ySwM_344.454 Anthoceros agrestis HOM05D004689 ORTHO05D006269 3.0e-106 389.4 242 81.4
Os03g0263500 Oryza sativa ssp. japonica HOM05D004689 ORTHO05D006269 1.6e-104 383.6 235 80.4
Pp3c9_13030 Physcomitrium patens HOM05D004689 ORTHO05D006269 8.1e-104 381.3 241 79.7
Mapoly0069s0004 Marchantia polymorpha HOM05D004689 ORTHO05D006269 4.0e-103 379.0 245 78.8
CBR_g54837 Chara braunii HOM05D004689 ORTHO05D006269 6.8e-103 378.3 249 77.1
MD04G1088800 Malus domestica HOM05D004689 ORTHO05D006269 5.8e-102 375.2 208 89.4
Zm00001eb011590 Zea mays HOM05D004689 ORTHO05D006269 1.3e-101 374.0 242 78.1
SMO228G0117 Selaginella moellendorffii HOM05D004689 ORTHO05D006269 1.0e-98 364.4 239 77.8
CAN.G1038.16 Capsicum annuum HOM05D004689 ORTHO05D006269 2.3e-95 353.2 295 77.3
Carub.0007s3257 Capsella rubella HOM05D004689 ORTHO05D006269 3.2e-92 342.8 241 73.0
AagrBONN_evm.TU.Sc2ySwM_344.3364 Anthoceros agrestis HOM05D004689 ORTHO05D006269 1.1e-87 327.8 181 88.4
Cre06.g252700 Chlamydomonas reinhardtii HOM05D004689 ORTHO05D006269 2.4e-87 326.6 235 70.6
Psat1g060440 Pisum sativum HOM05D004689 ORTHO05D006269 1.5e-86 323.9 342 53.5
Prupe.4G071900 Prunus persica HOM05D004689 ORTHO05D006269 2.4e-84 316.6 227 71.8
MCO12G316 Micromonas commoda HOM05D004689 ORTHO05D006269 4.2e-84 315.8 254 67.3
Manes.09G064318 Manihot esculenta HOM05D004689 ORTHO05D006269 5.6e-81 305.4 179 87.2
Cpa.g.sc87.109 Carica papaya HOM05D004689 ORTHO05D006269 9.9e-78 294.7 356 60.4
vmacro08797 Vaccinium macrocarpon HOM05D004689 ORTHO05D006269 2.2e-77 293.5 675 40.9
PRCOL_00004335 Prasinoderma coloniale HOM05D004689 ORTHO05D006269 1.4e-76 290.8 219 64.8
SHI12393 Sapria himalayana HOM05D004689 ORTHO05D006269 1.3e-74 284.3 263 63.1
Haze_26764 Corylus avellana HOM05D004689 ORTHO05D006269 9.6e-73 278.1 189 72.5
FvH4_6g16880 Fragaria vesca HOM05D004689 ORTHO05D006269 3.6e-72 276.2 175 80.0
Psat6g037120 Pisum sativum HOM05D005082 ORTHO05D006474 3.1e-71 273.1 207 69.1
Dinv35815 Davidia involucrata HOM05D004689 ORTHO05D006269 1.6e-67 260.8 150 86.0
Dinv37340 Davidia involucrata HOM05D004689 ORTHO05D006269 1.8e-63 247.3 132 91.7
AUR62043425 Chenopodium quinoa HOM05D004689 ORTHO05D006269 5.5e-60 235.7 225 57.8
Haze_19437 Corylus avellana HOM05D004689 ORTHO05D006269 8.7e-58 228.4 231 71.9
BcaB02g10459 Brassica carinata HOM05D004689 ORTHO05D006269 6.3e-56 222.2 198 61.6
SEGI_10194 Sequoiadendron giganteum HOM05D004689 ORTHO05D006269 4.5e-54 216.1 230 65.7
MBI17_g39322_MAGBIO Magnolia biondii HOM05D004689 ORTHO05D006269 1.9e-52 210.7 106 96.2
Nitab4.5_0002373g0090 Nicotiana tabacum HOM05D004689 ORTHO05D006269 1.9e-52 210.7 228 69.3
VMungo0219G0001 Vigna mungo HOM05D004689 ORTHO05D006269 7.2e-52 208.8 106 96.2
ATR0118G008 Amborella trichopoda HOM05D004689 ORTHO05D006269 9.3e-52 208.4 108 94.4
AUR62043819 Chenopodium quinoa HOM05D004689 ORTHO05D006269 2.7e-51 206.8 108 90.7
Haze_05755 Corylus avellana HOM05D004689 ORTHO05D006269 3.7e-48 196.4 141 75.2
Actinidia31313 Actinidia chinensis HOM05D004689 ORTHO05D006269 1.8e-47 194.1 102 91.2
Nitab4.5_0000349g0010 Nicotiana tabacum HOM05D004689 ORTHO05D006269 2.4e-47 193.7 106 90.6
TAR636G1083 Trochodendron aralioides HOM05D004689 ORTHO05D006269 3.1e-47 193.4 106 87.7
SMO031G0002 Selaginella moellendorffii HOM05D004689 ORTHO05D006269 5.5e-44 182.6 92 94.6
Cc00_g23430 Coffea canephora HOM05D004689 ORTHO05D006269 1.4e-42 177.9 95 92.6
Cc00_g35330 Coffea canephora HOM05D004689 ORTHO05D006269 1.1e-41 174.9 95 91.6
ATR0118G005 Amborella trichopoda HOM05D004689 ORTHO05D006269 2.8e-40 170.2 88 89.8
MBI17_g39319_MAGBIO Magnolia biondii HOM05D004689 ORTHO05D006269 4.1e-39 166.4 227 64.3
AagrBONN_evm.TU.Sc2ySwM_344.3466 Anthoceros agrestis HOM05D004689 ORTHO05D006269 1.7e-37 161.0 132 65.9
Haze_06063 Corylus avellana HOM05D004689 ORTHO05D023802 5.2e-34 149.4 202 58.4
Psat0s2549g0120 Pisum sativum HOM05D004689 ORTHO05D006269 1.8e-31 141.0 83 78.3
Psat1g060480 Pisum sativum HOM05D004689 ORTHO05D006269 1.2e-30 138.3 71 91.5
Psat1g060520 Pisum sativum HOM05D004689 ORTHO05D006269 1.2e-30 138.3 71 91.5
Psat1g060600 Pisum sativum HOM05D004689 ORTHO05D006269 8.5e-21 105.5 58 86.2
Nitab4.5_0000349g0040 Nicotiana tabacum HOM05D004689 ORTHO05D006269 1.5e-20 104.8 94 63.8
MSTRG.5777 Avicennia marina HOM05D004689 ORTHO05D023802 5.5e-20 102.8 148 73.0
Pp3c4_2800 Physcomitrium patens HOM05D004689 ORTHO05D006269 3.4e-17 93.6 128 50.0
Haze_13658 Corylus avellana HOM05D004689 ORTHO05D023802 4.4e-17 93.2 177 59.9
Dinv25427 Davidia involucrata HOM05D004689 ORTHO05D182071 4.0e-10 70.1 45 75.6
Dinv44323 Davidia involucrata HOM05D004689 ORTHO05D183653 4.0e-10 70.1 38 89.5
Psat4g215720 Pisum sativum HOM05D002324 ORTHO05D002380 2.6e-09 67.4 103 45.6
Dinv29092 Davidia involucrata HOM05D004689 ORTHO05D185927 4.1e-07 60.1 45 64.4
Haze_08645 Corylus avellana HOM05D004689 ORTHO05D023802 7.8e-06 55.8 46 73.9


User provided reference genes

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