Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold3G01566 Striga asiatica HOM05D005396 ORTHO05D006400 8.4e-224 780.0 391 100.0
MSTRG.17554 Avicennia marina HOM05D005396 ORTHO05D006400 3.9e-128 462.2 322 72.4
SalBow2G1218 Salvia bowleyana HOM05D005396 ORTHO05D006400 5.4e-122 441.8 379 63.9
Migut.N02270 Erythranthe guttata HOM05D005396 ORTHO05D006400 5.1e-120 435.3 317 72.6
Oeu058539.1 Olea europaea HOM05D005396 ORTHO05D006400 9.6e-119 431.0 318 67.9
Peaxi162Scf00441g00618 Petunia axillaris HOM05D005396 ORTHO05D006400 1.0e-112 411.0 322 65.5
Nitab4.5_0001568g0090 Nicotiana tabacum HOM05D005396 ORTHO05D006400 9.0e-109 397.9 292 67.5
Sopen01g002210 Solanum pennellii HOM05D005396 ORTHO05D006400 2.6e-108 396.4 314 64.0
PGSC0003DMG400032195 Solanum tuberosum HOM05D005396 ORTHO05D006400 1.9e-106 390.2 314 63.1
Solyc01g006210.4 Solanum lycopersicum HOM05D005396 ORTHO05D006400 7.1e-106 388.3 314 63.4
CAN.G140.42 Capsicum annuum HOM05D005396 ORTHO05D006400 9.6e-103 377.9 315 61.6
Nn4g25074 Nelumbo nucifera HOM05D005396 ORTHO05D006400 1.6e-102 377.1 318 58.2
TAR623G1186 Trochodendron aralioides HOM05D005396 ORTHO05D006400 6.9e-101 371.7 316 57.0
Hma1.2p1_0143F.1_g064480 Hydrangea macrophylla HOM05D005396 ORTHO05D006400 9.0e-101 371.3 316 59.8
GSVIVG01037451001 Vitis vinifera HOM05D005396 ORTHO05D006400 9.0e-101 371.3 319 59.2
Rhsim13G0228100 Rhododendron simsii HOM05D005396 ORTHO05D006400 2.0e-100 370.2 319 58.9
Actinidia06861 Actinidia chinensis HOM05D005396 ORTHO05D006400 2.6e-100 369.8 319 58.6
RhsimUnG0154800 Rhododendron simsii HOM05D005396 ORTHO05D006400 5.9e-100 368.6 319 58.6
ECA248G0004 Erigeron canadensis HOM05D005396 ORTHO05D006400 8.4e-99 364.8 292 62.0
DCAR_024368 Daucus carota HOM05D005396 ORTHO05D006400 2.5e-98 363.2 323 58.8
HanXRQChr01g0021191 Helianthus annuus HOM05D005396 ORTHO05D006400 2.5e-98 363.2 290 60.7
QL93p0267_0015 Quercus lobata HOM05D005396 ORTHO05D006400 2.5e-98 363.2 316 58.2
Sc12g0000550 Simmondsia chinensis HOM05D005396 ORTHO05D006400 1.2e-97 360.9 318 57.2
Cc01_g01860 Coffea canephora HOM05D005396 ORTHO05D006400 1.6e-97 360.5 318 57.9
Manes.04G053800 Manihot esculenta HOM05D005396 ORTHO05D006400 6.1e-97 358.6 318 56.0
Eucgr.J00626 Eucalyptus grandis HOM05D005396 ORTHO05D006400 7.9e-97 358.2 321 58.9
Cfa013848 Carpinus fangiana HOM05D005396 ORTHO05D006400 6.7e-96 355.1 316 56.3
MD11G1180700 Malus domestica HOM05D005396 ORTHO05D006400 8.7e-96 354.8 318 56.3
Aqoxy5G02307 Aquilegia oxysepala HOM05D005396 ORTHO05D006400 5.7e-95 352.1 323 55.7
Hund20984 Selenicereus undatus HOM05D005396 ORTHO05D006400 9.7e-95 351.3 321 55.8
Dinv09746 Davidia involucrata HOM05D005396 ORTHO05D006400 1.6e-94 350.5 239 70.3
MBI13_g02393_MAGBIO Magnolia biondii HOM05D005396 ORTHO05D006400 2.2e-94 350.1 249 65.1
Prupe.6G153500 Prunus persica HOM05D005396 ORTHO05D006400 2.8e-94 349.7 318 57.2
PSO384G1109 Papaver somniferum HOM05D005396 ORTHO05D006400 6.3e-94 348.6 299 57.2
BNapus_Darmor_BZH_scaffold_38p01120 Brassica napus HOM05D005396 ORTHO05D006400 6.9e-93 345.1 322 55.3
BraA02t05619Z Brassica rapa HOM05D005396 ORTHO05D006400 6.9e-93 345.1 322 55.3
A10p18950 Brassica napus HOM05D005396 ORTHO05D006400 9.0e-93 344.7 320 54.7
BraA10t43972Z Brassica rapa HOM05D005396 ORTHO05D006400 9.0e-93 344.7 320 54.7
TWI79G1618 Tripterygium wilfordii HOM05D005396 ORTHO05D006400 9.0e-93 344.7 326 55.2
RcHm_v2.0_Chr5g0056531 Rosa chinensis HOM05D005396 ORTHO05D006400 1.2e-92 344.4 319 55.2
Thecc.09G337500 Theobroma cacao HOM05D005396 ORTHO05D006400 1.2e-92 344.4 365 51.8
Ah.15g099430 Amaranthus hybridus HOM05D005396 ORTHO05D006400 1.5e-92 344.0 318 53.8
AUR62001615 Chenopodium quinoa HOM05D005396 ORTHO05D006400 1.5e-92 344.0 318 54.4
PGR119G0906 Punica granatum HOM05D005396 ORTHO05D006400 2.0e-92 343.6 312 55.8
Carub.0006s1945 Capsella rubella HOM05D005396 ORTHO05D006400 2.6e-92 343.2 319 55.2
Cpa.g.sc103.64 Carica papaya HOM05D005396 ORTHO05D006400 4.5e-92 342.4 325 54.2
Nitab4.5_0005132g0020 Nicotiana tabacum HOM05D005396 ORTHO05D006400 4.5e-92 342.4 286 62.6
TWI31G0083 Tripterygium wilfordii HOM05D005396 ORTHO05D006400 4.5e-92 342.4 326 54.9
Potri.004G195600 Populus trichocarpa HOM05D005396 ORTHO05D006400 5.9e-92 342.0 321 53.9
Glyma.20G050900 Glycine max HOM05D005396 ORTHO05D006400 1.0e-91 341.3 351 48.4
Lsat_1_v5_gn_1_68341 Lactuca sativa HOM05D005396 ORTHO05D006400 1.0e-91 341.3 340 54.1
vmacro04253 Vaccinium macrocarpon HOM05D005396 ORTHO05D006400 1.1e-90 337.8 375 49.9
BcaB05g22770 Brassica carinata HOM05D005396 ORTHO05D006400 1.4e-90 337.4 321 55.1
Sp6g23380 Schrenkiella parvula HOM05D005396 ORTHO05D006400 1.4e-90 337.4 320 55.6
arahy.Tifrunner.gnm1.ann1.MJD0TM Arachis hypogaea HOM05D005396 ORTHO05D006400 2.5e-90 336.7 328 51.5
BcaC03g13834 Brassica carinata HOM05D005396 ORTHO05D006400 2.5e-90 336.7 323 54.5
BolC2t07100H Brassica oleracea HOM05D005396 ORTHO05D006400 2.5e-90 336.7 323 54.5
FAN11G0079 Fragaria x ananassa HOM05D005396 ORTHO05D006400 2.5e-90 336.7 317 54.6
CANSAT54G2052 Cannabis sativa HOM05D005396 ORTHO05D006400 4.2e-90 335.9 249 63.5
Thhalv10013965m.g Eutrema salsugineum HOM05D005396 ORTHO05D006400 4.2e-90 335.9 261 63.2
FvH4_3g30540 Fragaria vesca HOM05D005396 ORTHO05D006400 4.2e-90 335.9 317 54.6
Atru.chr3.1122 Acer truncatum HOM05D005396 ORTHO05D006400 7.2e-90 335.1 325 55.1
Atru.chr3.1131 Acer truncatum HOM05D005396 ORTHO05D006400 7.2e-90 335.1 325 55.1
BcaC04g19522 Brassica carinata HOM05D005396 ORTHO05D006400 9.4e-90 334.7 320 53.8
BcaB08g36475 Brassica carinata HOM05D005396 ORTHO05D006400 1.2e-89 334.3 261 62.8
BolC9t58356H Brassica oleracea HOM05D005396 ORTHO05D006400 1.6e-89 334.0 320 53.8
ClCG02G024200 Citrullus lanatus HOM05D005396 ORTHO05D006400 2.7e-89 333.2 340 51.5
Sed0007754 Sechium edule HOM05D005396 ORTHO05D006400 2.7e-89 333.2 264 61.0
CDE02G2011 Ceratophyllum demersum HOM05D005396 ORTHO05D006400 3.6e-89 332.8 336 51.5
COL.COLO4_18366 Corchorus olitorius HOM05D005396 ORTHO05D006338 4.6e-89 332.4 344 51.7
AL6G32750 Arabidopsis lyrata HOM05D005396 ORTHO05D006400 1.0e-88 331.3 316 55.1
Gohir.A03G035066 Gossypium hirsutum HOM05D005396 ORTHO05D006400 1.0e-88 331.3 321 56.1
Zm00001eb405340 Zea mays HOM05D005396 ORTHO05D006400 1.0e-88 331.3 316 52.2
FAN25G1745 Fragaria x ananassa HOM05D005396 ORTHO05D006400 1.4e-88 330.9 299 56.2
Gorai.003G140300 Gossypium raimondii HOM05D005396 ORTHO05D006400 1.4e-88 330.9 321 55.5
Gohir.D03G133200 Gossypium hirsutum HOM05D005396 ORTHO05D006400 3.0e-88 329.7 321 55.8
CARHR191730 Cardamine hirsuta HOM05D005396 ORTHO05D006400 3.9e-88 329.3 266 60.9
MELO3C014703.2 Cucumis melo HOM05D005396 ORTHO05D006400 3.9e-88 329.3 315 53.3
C09p54930 Brassica napus HOM05D005396 ORTHO05D006400 8.8e-88 328.2 320 53.1
Ciclev10017900m.g Citrus clementina HOM05D005396 ORTHO05D006400 1.1e-87 327.8 320 55.0
Lalb_Chr19g0127081 Lupinus albus HOM05D005396 ORTHO05D006400 1.1e-87 327.8 292 54.5
Phvul.L001837 Phaseolus vulgaris HOM05D005396 ORTHO05D006400 1.5e-87 327.4 351 47.0
VMungo0540G2152 Vigna mungo HOM05D005396 ORTHO05D006400 2.5e-87 326.6 297 51.5
Dinv36333 Davidia involucrata HOM05D005396 ORTHO05D006400 9.7e-87 324.7 211 73.5
Lj2A553G20 Lonicera japonica HOM05D005396 ORTHO05D006400 1.3e-86 324.3 214 72.0
Os12g0127100 Oryza sativa ssp. japonica HOM05D005396 ORTHO05D006400 1.3e-86 324.3 320 52.5
HPP92_018982 Vanilla planifolia HOM05D005396 ORTHO05D006400 1.7e-86 323.9 300 54.3
Aa31LG1G13640 Aethionema arabicum HOM05D005396 ORTHO05D006400 2.2e-86 323.6 317 53.3
ATR0307G059 Amborella trichopoda HOM05D005396 ORTHO05D006400 2.8e-86 323.2 316 53.8
AT5G21140 Arabidopsis thaliana HOM05D005396 ORTHO05D006400 2.8e-86 323.2 316 54.1
THA.LOC104799054 Tarenaya hassleriana HOM05D005396 ORTHO05D006400 3.7e-86 322.8 320 53.4
FAN16G3367 Fragaria x ananassa HOM05D005396 ORTHO05D006400 6.3e-86 322.0 315 52.7
Ca_16226_v3 Cicer arietinum L. HOM05D005396 ORTHO05D006400 1.4e-85 320.9 351 48.1
Ca_30133_v3 Cicer arietinum L. HOM05D005396 ORTHO05D006400 1.4e-85 320.9 351 48.1
EL10Ac7g16216 Beta vulgaris HOM05D005396 ORTHO05D006400 1.8e-85 320.5 364 47.8
Os11g0130300 Oryza sativa ssp. japonica HOM05D005396 ORTHO05D006400 4.1e-85 319.3 318 52.2
Sabra04G0132800 Salix brachista HOM05D005396 ORTHO05D006400 4.1e-85 319.3 379 46.4
Medtr3g078850 Medicago truncatula HOM05D005396 ORTHO05D006400 4.5e-84 315.8 286 52.1
CsaV3_4G017330 Cucumis sativus L. HOM05D005396 ORTHO05D006400 7.7e-84 315.1 273 57.1
Lj6g0008952 Lotus japonicus HOM05D005396 ORTHO05D006400 7.7e-84 315.1 317 48.9
PSO339G5547 Papaver somniferum HOM05D005396 ORTHO05D006400 1.0e-83 314.7 238 62.6
TPR.G28402 Trifolium pratense HOM05D005396 ORTHO05D006400 1.1e-82 311.2 293 52.2
arahy.Tifrunner.gnm1.ann1.MU94NL Arachis hypogaea HOM05D005396 ORTHO05D006400 3.2e-82 309.7 356 47.2
Duzib170G1145 Durio zibethinus HOM05D005396 ORTHO05D006400 4.8e-78 295.8 326 50.9
Haze_22522 Corylus avellana HOM05D005396 ORTHO05D006400 1.8e-77 293.9 316 50.6
EL10Ac7g16212 Beta vulgaris HOM05D005396 ORTHO05D006400 1.5e-71 274.2 326 46.0
Psat0s646g0040 Pisum sativum HOM05D005396 ORTHO05D006400 1.5e-71 274.2 326 46.9
FAN21G3982 Fragaria x ananassa HOM05D005396 ORTHO05D006400 2.6e-71 273.5 211 64.0
EL10Ac1g01677 Beta vulgaris HOM05D005396 ORTHO05D006400 6.3e-70 268.9 325 46.2
SEGI_19301 Sequoiadendron giganteum HOM05D005396 ORTHO05D006400 1.3e-62 244.6 218 55.0
AUR62020162 Chenopodium quinoa HOM05D005396 ORTHO05D006400 3.8e-59 233.0 280 45.7
Pp3c20_10070 Physcomitrium patens HOM05D005396 ORTHO05D006400 9.5e-58 228.4 307 39.1
CiPaw.07G159800 Carya illinoinensis HOM05D005396 ORTHO05D006400 1.5e-55 221.1 214 51.4
unitig_60.g25792 Utricularia gibba HOM05D005396 ORTHO05D006400 1.5e-55 221.1 321 43.9
BolC2t07101H Brassica oleracea HOM05D005396 ORTHO05D006400 2.2e-54 217.2 274 46.4
BcaC03g13835 Brassica carinata HOM05D005396 ORTHO05D006400 2.8e-54 216.9 284 45.4
BraA02t05620Z Brassica rapa HOM05D005396 ORTHO05D006400 3.5e-52 209.9 275 45.8
SHI25366 Sapria himalayana HOM05D005396 ORTHO05D000023 5.0e-51 206.1 368 35.6
BNapus_Darmor_BZH_scaffold_38p01110 Brassica napus HOM05D005396 ORTHO05D006400 3.3e-50 203.4 278 45.0
CBR_g4478 Chara braunii HOM05D005396 ORTHO05D000048 1.2e-49 201.4 245 39.2
SMO239G0090 Selaginella moellendorffii HOM05D005396 ORTHO05D006400 1.2e-47 194.9 233 42.5
EL10Ac7g16203 Beta vulgaris HOM05D005396 ORTHO05D006400 2.0e-47 194.1 205 51.2
DCAR_024367 Daucus carota HOM05D005396 ORTHO05D006400 4.3e-42 176.4 323 38.7
CSS0010626 Camellia sinensis var. sinensis HOM05D005396 ORTHO05D006400 1.4e-40 171.4 186 50.5
EL10Ac7g16214 Beta vulgaris HOM05D005396 ORTHO05D006400 2.6e-39 167.2 272 41.2
EL10Ac7g16209 Beta vulgaris HOM05D005396 ORTHO05D006400 5.8e-39 166.0 189 48.7
AagrBONN_evm.TU.Sc2ySwM_368.35 Anthoceros agrestis HOM05D005396 ORTHO05D006400 6.0e-36 156.0 200 39.5
EL10Ac7g16205 Beta vulgaris HOM05D005396 ORTHO05D006400 2.3e-35 154.1 404 30.0
vmacro22428 Vaccinium macrocarpon HOM05D005396 ORTHO05D006400 2.3e-35 154.1 221 43.0
RcHm_v2.0_Chr6g0256561 Rosa chinensis HOM05D005396 ORTHO05D006400 2.5e-34 150.6 113 58.4
CSS0025534 Camellia sinensis var. sinensis HOM05D005396 ORTHO05D006400 1.2e-31 141.7 110 64.5
Zm00001eb199750 Zea mays HOM05D005396 ORTHO05D006400 1.2e-31 141.7 205 42.9
RcHm_v2.0_Chr5g0056151 Rosa chinensis HOM05D005396 ORTHO05D006400 7.8e-28 129.0 163 43.6
Psat5g030400 Pisum sativum HOM05D001137 ORTHO05D006400 2.3e-27 127.5 158 39.9
Mapoly0185s0017 Marchantia polymorpha HOM05D005396 ORTHO05D006400 5.1e-27 126.3 294 29.9
MCO07G491 Micromonas commoda HOM05D005396 ORTHO05D006400 1.7e-19 101.3 196 31.6
Cfa026181 Carpinus fangiana HOM05D002398 ORTHO05D000038 3.5e-12 77.0 276 21.7
PRCOL_00005415 Prasinoderma coloniale HOM05D005396 ORTHO05D006400 3.9e-11 73.6 202 28.7
HanXRQChr08g0223711 Helianthus annuus HOM05D005396 ORTHO05D006400 2.1e-09 67.8 45 62.2
Actinidia16276 Actinidia chinensis HOM05D005396 ORTHO05D006400 5.3e-08 63.2 108 35.2
SEGI_06155 Sequoiadendron giganteum HOM05D005396 ORTHO05D006400 1.7e-06 58.2 85 31.8


User provided reference genes

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