Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold37G14629 Striga asiatica HOM05D000880 ORTHO05D399012 3.9e-84 314.7 152 100.0
unitig_748.g8176 Utricularia gibba HOM05D002718 ORTHO05D003269 1.3e-15 87.0 51 70.6
SGA_v2.0_scaffold27G11654 Striga asiatica HOM05D000880 ORTHO05D008158 1.7e-15 86.7 50 78.0
MSTRG.25767 Avicennia marina HOM05D000880 ORTHO05D008158 2.3e-15 86.3 51 72.5
Migut.A00456 Erythranthe guttata HOM05D000880 ORTHO05D008158 2.3e-15 86.3 51 70.6
Os06g0661800 Oryza sativa ssp. japonica HOM05D000880 ORTHO05D008158 2.5e-14 82.8 51 68.6
Actinidia03580 Actinidia chinensis HOM05D000880 ORTHO05D008158 3.3e-14 82.4 69 56.5
Oeu014113.1 Olea europaea HOM05D000880 ORTHO05D008158 3.3e-14 82.4 51 68.6
CSS0036637 Camellia sinensis var. sinensis HOM05D000880 ORTHO05D008158 4.3e-14 82.0 51 68.6
Nn8g40848 Nelumbo nucifera HOM05D000880 ORTHO05D008158 5.6e-14 81.6 71 52.1
AT5G24850 Arabidopsis thaliana HOM05D000880 ORTHO05D008158 9.5e-14 80.9 51 66.7
BraA06t26486Z Brassica rapa HOM05D000880 ORTHO05D008158 9.5e-14 80.9 57 61.4
MELO3C003644.2 Cucumis melo HOM05D000880 ORTHO05D008158 9.5e-14 80.9 71 49.3
CsaV3_3G046930 Cucumis sativus L. HOM05D000880 ORTHO05D008158 9.5e-14 80.9 71 49.3
AL6G36510 Arabidopsis lyrata HOM05D000880 ORTHO05D008158 1.2e-13 80.5 51 66.7
ATR0626G237 Amborella trichopoda HOM05D000880 ORTHO05D008158 1.6e-13 80.1 64 62.5
ClCG05G017430 Citrullus lanatus HOM05D000880 ORTHO05D008158 1.6e-13 80.1 71 47.9
Medtr3g108700 Medicago truncatula HOM05D000880 ORTHO05D008158 1.6e-13 80.1 51 64.7
Rhsim07G0170300 Rhododendron simsii HOM05D000880 ORTHO05D008158 1.6e-13 80.1 51 68.6
TPR.G12367 Trifolium pratense HOM05D000880 ORTHO05D008158 1.6e-13 80.1 51 64.7
SalBow4G1400 Salvia bowleyana HOM05D000880 ORTHO05D008158 2.1e-13 79.7 51 66.7
THA.LOC104803319 Tarenaya hassleriana HOM05D000880 ORTHO05D008158 2.1e-13 79.7 51 64.7
Cc00_g04770 Coffea canephora HOM05D000880 ORTHO05D008158 2.8e-13 79.3 69 52.2
TAR626G1691 Trochodendron aralioides HOM05D000880 ORTHO05D008158 2.8e-13 79.3 51 64.7
C07p42930 Brassica napus HOM05D005859 ORTHO05D008158 3.6e-13 79.0 51 64.7
BolC7t44822H Brassica oleracea HOM05D005859 ORTHO05D008158 3.6e-13 79.0 51 64.7
CSS0016378 Camellia sinensis var. sinensis HOM05D000880 ORTHO05D008158 3.6e-13 79.0 51 66.7
Carub.0006s2270 Capsella rubella HOM05D000880 ORTHO05D008158 3.6e-13 79.0 51 64.7
Thhalv10003995m.g Eutrema salsugineum HOM05D000880 ORTHO05D008158 3.6e-13 79.0 51 64.7
Sp2g22600 Schrenkiella parvula HOM05D000880 ORTHO05D008158 3.6e-13 79.0 51 64.7
Sed0006739 Sechium edule HOM05D000880 ORTHO05D008158 3.6e-13 79.0 71 47.9
Ca_15679_v3 Cicer arietinum L. HOM05D000880 ORTHO05D008158 4.7e-13 78.6 51 64.7
A09p06390 Brassica napus HOM05D000880 ORTHO05D008158 6.1e-13 78.2 51 62.7
C09p07120 Brassica napus HOM05D000880 ORTHO05D008158 6.1e-13 78.2 51 62.7
BolC9t53624H Brassica oleracea HOM05D000880 ORTHO05D008158 6.1e-13 78.2 51 62.7
Phvul.009G100200 Phaseolus vulgaris HOM05D000880 ORTHO05D008158 6.1e-13 78.2 51 62.7
Sabra06G0215200 Salix brachista HOM05D000880 ORTHO05D008158 6.1e-13 78.2 51 64.7
Cfa013251 Carpinus fangiana HOM05D000880 ORTHO05D008158 8.0e-13 77.8 51 62.7
Mapoly0002s0311 Marchantia polymorpha HOM05D000880 ORTHO05D008158 8.0e-13 77.8 52 67.3
Aa31LG11G4060 Aethionema arabicum HOM05D000880 ORTHO05D008158 1.0e-12 77.4 51 64.7
Ah.10g033780 Amaranthus hybridus HOM05D000880 ORTHO05D008158 1.0e-12 77.4 51 60.8
BraA09t36284Z Brassica rapa HOM05D000880 ORTHO05D008158 1.0e-12 77.4 51 62.7
PSO421G0529 Papaver somniferum HOM05D000880 ORTHO05D008158 1.0e-12 77.4 51 64.7
Psat5g025080 Pisum sativum HOM05D000880 ORTHO05D008158 1.0e-12 77.4 51 62.7
Potri.006G277500 Populus trichocarpa HOM05D000880 ORTHO05D008158 1.0e-12 77.4 51 64.7
arahy.Tifrunner.gnm1.ann1.95FWWQ Arachis hypogaea HOM05D000880 ORTHO05D008158 1.4e-12 77.0 51 62.7
arahy.Tifrunner.gnm1.ann1.C9KM7P Arachis hypogaea HOM05D000880 ORTHO05D008158 1.4e-12 77.0 51 62.7
AUR62020632 Chenopodium quinoa HOM05D000880 ORTHO05D008158 1.4e-12 77.0 51 62.7
AUR62038750 Chenopodium quinoa HOM05D000880 ORTHO05D008158 1.4e-12 77.0 51 62.7
Eucgr.C03997 Eucalyptus grandis HOM05D000880 ORTHO05D008158 1.4e-12 77.0 51 66.7
Glyma.04G074500 Glycine max HOM05D000880 ORTHO05D008158 1.4e-12 77.0 51 62.7
FAN24G1353 Fragaria x ananassa HOM05D000880 ORTHO05D008158 1.8e-12 76.6 51 58.8
Manes.16G136800 Manihot esculenta HOM05D000880 ORTHO05D008158 1.8e-12 76.6 51 64.7
Prupe.1G462400 Prunus persica HOM05D000880 ORTHO05D008158 1.8e-12 76.6 51 62.7
BcaC04g23563 Brassica carinata HOM05D000880 ORTHO05D008158 2.3e-12 76.3 51 60.8
TWI34G0460 Tripterygium wilfordii HOM05D000880 ORTHO05D008158 2.3e-12 76.3 51 62.7
VMungo1309G2560 Vigna mungo HOM05D000880 ORTHO05D008158 2.3e-12 76.3 51 62.7
A06p35620 Brassica napus HOM05D000880 ORTHO05D008158 3.0e-12 75.9 50 66.0
CARHR188600 Cardamine hirsuta HOM05D000880 ORTHO05D008158 3.0e-12 75.9 51 62.7
CiPaw.07G214700 Carya illinoinensis HOM05D000880 ORTHO05D008158 3.0e-12 75.9 51 60.8
Sc09g0007880 Simmondsia chinensis HOM05D000880 ORTHO05D008158 3.0e-12 75.9 51 60.8
Cpa.g.sc244.8 Carica papaya HOM05D000880 ORTHO05D008158 4.0e-12 75.5 51 60.8
PGR044G0601 Punica granatum HOM05D000880 ORTHO05D008158 4.0e-12 75.5 51 62.7
QL12p024664 Quercus lobata HOM05D000880 ORTHO05D008158 5.2e-12 75.1 71 45.1
Lalb_Chr23g0268901 Lupinus albus HOM05D000880 ORTHO05D008158 6.8e-12 74.7 71 46.5
Peaxi162Scf00213g01024 Petunia axillaris HOM05D000880 ORTHO05D008158 6.8e-12 74.7 50 64.0
Hund06650 Selenicereus undatus HOM05D000880 ORTHO05D008158 6.8e-12 74.7 51 60.8
GSVIVG01035548001 Vitis vinifera HOM05D000880 ORTHO05D008158 6.8e-12 74.7 51 60.8
Atru.chr7.2669 Acer truncatum HOM05D000880 ORTHO05D008158 8.9e-12 74.3 51 58.8
BcaB04g19802 Brassica carinata HOM05D000880 ORTHO05D008158 8.9e-12 74.3 51 60.8
Lj1g0027131 Lotus japonicus HOM05D000880 ORTHO05D008158 8.9e-12 74.3 51 58.8
C09p07080 Brassica napus HOM05D000880 ORTHO05D008158 1.2e-11 73.9 51 58.8
Duzib168G1559 Durio zibethinus HOM05D000880 ORTHO05D008158 1.2e-11 73.9 51 60.8
RcHm_v2.0_Chr6g0312231 Rosa chinensis HOM05D000880 ORTHO05D008158 1.2e-11 73.9 51 56.9
DCAR_030962 Daucus carota HOM05D005064 ORTHO05D008158 1.5e-11 73.6 51 60.8
Ciclev10010501m.g Citrus clementina HOM05D000880 ORTHO05D008158 2.0e-11 73.2 67 49.3
Gohir.A06G107000 Gossypium hirsutum HOM05D000880 ORTHO05D008158 2.0e-11 73.2 51 58.8
Gohir.D06G109200 Gossypium hirsutum HOM05D000880 ORTHO05D008158 2.0e-11 73.2 51 60.8
Gorai.010G124000 Gossypium raimondii HOM05D000880 ORTHO05D008158 2.0e-11 73.2 51 60.8
PGSC0003DMG400029591 Solanum tuberosum HOM05D000880 ORTHO05D008158 2.0e-11 73.2 51 60.8
vmacro05105 Vaccinium macrocarpon HOM05D000880 ORTHO05D008158 2.0e-11 73.2 61 54.1
CDE02G2617 Ceratophyllum demersum HOM05D000880 ORTHO05D008158 2.6e-11 72.8 51 60.8
Dinv26557 Davidia involucrata HOM05D000880 ORTHO05D008158 2.6e-11 72.8 51 60.8
MD15G1110200 Malus domestica HOM05D000880 ORTHO05D008158 2.6e-11 72.8 51 58.8
Thecc.09G004900 Theobroma cacao HOM05D000880 ORTHO05D008158 2.6e-11 72.8 51 60.8
EL10Ac2g03714 Beta vulgaris HOM05D000880 ORTHO05D008158 5.7e-11 71.6 51 56.9
SEGI_11643 Sequoiadendron giganteum HOM05D000880 ORTHO05D008158 9.8e-11 70.9 81 48.1
Solyc08g074270.4 Solanum lycopersicum HOM05D000880 ORTHO05D008158 9.8e-11 70.9 76 46.1
Sopen08g022920 Solanum pennellii HOM05D000880 ORTHO05D008158 9.8e-11 70.9 51 58.8
FvH4_2g30661 Fragaria vesca HOM05D000880 ORTHO05D008158 1.3e-10 70.5 51 56.9
Pp3c21_7810 Physcomitrium patens HOM05D000880 ORTHO05D008158 2.9e-10 69.3 52 59.6
SMO172G0045 Selaginella moellendorffii HOM05D000880 ORTHO05D008158 4.9e-10 68.6 60 51.7
PSO423G0300 Papaver somniferum HOM05D000880 ORTHO05D008158 1.1e-09 67.4 75 45.3
AagrBONN_evm.TU.Sc2ySwM_368.3176 Anthoceros agrestis HOM05D000880 ORTHO05D008158 1.8e-09 66.6 52 59.6
Aqoxy3G04243 Aquilegia oxysepala HOM05D000880 ORTHO05D008158 2.4e-09 66.2 52 55.8
Aqoxy7G02771 Aquilegia oxysepala HOM05D000880 ORTHO05D008158 2.4e-09 66.2 52 55.8
HPP92_021891 Vanilla planifolia HOM05D000880 ORTHO05D008158 1.6e-08 63.5 42 64.3
CBR_g905 Chara braunii HOM05D000880 ORTHO05D008158 2.0e-08 63.2 96 39.6
SGA_v2.0_scaffold452G51820 Striga asiatica HOM05D006384 ORTHO05D007917 6.6e-07 58.2 53 60.4


User provided reference genes

Program Settings