Gene: Sopen08g022920

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen08g022920
  • Transcript Identifier Sopen08g022920.1
  • Gene Type Coding gene
  • Location Spenn-ch08 : 62469095-62474087 : negative

Gene Family Information

  • ID HOM05D000880
  • #Genes/#Species 677/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen08g022920.1

Descriptions

  • Description Binds flavin adenine dinucleotide and DNA. It does not have photolyase activity, and it is likely to act as photoreceptor. Closely related to Synechocystis cryptochrome. | cryptochrome 3 (CRY3) | FUNCTIONS IN: FMN binding, DNA binding, DNA photolyase activity | INVOLVED IN: DNA repair | LOCATED IN: mitochondrion, chloroplast | EXPRESSED IN: 23 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold , DNA photolyase, N-terminal , Cryptochrome, DASH , DNA photolyase, FAD-binding/Cryptochrome, C-terminal , Cryptochrome/DNA photolyase, class 1 | BEST Arabidopsis thaliana protein match is: photolyase/blue-light receptor 2
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006281
IEA
InterProDNA repair
GO:0000719
ISO
PLAZA Integrative Orthologyphotoreactive repair AT5G24850

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003913
IEA
InterProDNA photolyase activity
GO:0003677
ISO
PLAZA Integrative OrthologyDNA binding AT5G24850
GO:0010181
ISO
PLAZA Integrative OrthologyFMN binding AT5G24850
GO:0003729
ISO
PLAZA Integrative OrthologymRNA binding AT5G24850

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009507
ISO
PLAZA Integrative Orthologychloroplast AT5G24850
GO:0005739
ISO
PLAZA Integrative Orthologymitochondrion AT5G24850

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR002081 Cryptochrome/DNA photolyase class 1
IPR036134 Cryptochrome/DNA photolyase, FAD-binding domain-like superfamily
IPR006050 DNA photolyase, N-terminal
IPR036155 Cryptochrome/photolyase, N-terminal domain superfamily
IPR014133 Cryptochrome DASH
IPR014729 Rossmann-like alpha/beta/alpha sandwich fold
IPR005101 Cryptochrome/DNA photolyase, FAD-binding domain
Mapman id Description
26.1.2.1.1 External stimuli response.light.UV-A/blue light.cryptochrome-mediated photoperception.cryptochrome photoreceptor (CRY)