Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold338G49249 Striga asiatica HOM05D004180 ORTHO05D005323 6.5e-257 890.2 441 100.0
MSTRG.22929 Avicennia marina HOM05D004180 ORTHO05D005323 3.2e-227 791.6 562 74.4
Oeu044608.1 Olea europaea HOM05D004180 ORTHO05D005323 1.0e-225 786.6 552 74.1
Oeu037582.1 Olea europaea HOM05D004180 ORTHO05D005323 1.3e-225 786.2 561 73.6
CSS0024351 Camellia sinensis var. sinensis HOM05D004180 ORTHO05D005323 3.0e-225 785.0 561 72.9
Cc04_g10350 Coffea canephora HOM05D004180 ORTHO05D005323 1.1e-224 783.1 561 73.6
Ah.08g218120 Amaranthus hybridus HOM05D004180 ORTHO05D005323 4.3e-224 781.2 566 71.9
AUR62001277 Chenopodium quinoa HOM05D004180 ORTHO05D005323 4.3e-224 781.2 566 72.3
Rhsim12G0172100 Rhododendron simsii HOM05D004180 ORTHO05D005323 1.6e-223 779.2 561 72.7
Manes.06G115200 Manihot esculenta HOM05D004180 ORTHO05D005323 2.1e-223 778.9 559 72.5
Solyc03g110910.4 Solanum lycopersicum HOM05D004180 ORTHO05D005323 2.1e-223 778.9 566 72.3
Atru.chr9.1011 Acer truncatum HOM05D004180 ORTHO05D005323 3.6e-223 778.1 561 72.4
COL.COLO4_09266 Corchorus olitorius HOM05D004180 ORTHO05D005323 3.6e-223 778.1 564 72.3
Duzib084G0269 Durio zibethinus HOM05D004180 ORTHO05D005323 4.7e-223 777.7 564 72.3
Hund05645 Selenicereus undatus HOM05D004180 ORTHO05D005323 4.7e-223 777.7 561 72.9
PGSC0003DMG401015202 Solanum tuberosum HOM05D004180 ORTHO05D005323 6.2e-223 777.3 564 72.3
Thecc.03G122700 Theobroma cacao HOM05D004180 ORTHO05D005323 6.2e-223 777.3 564 72.5
AUR62025729 Chenopodium quinoa HOM05D004180 ORTHO05D005323 8.0e-223 776.9 566 71.7
Gohir.D11G038900 Gossypium hirsutum HOM05D004180 ORTHO05D005323 8.0e-223 776.9 564 72.2
Sopen03g030100 Solanum pennellii HOM05D004180 ORTHO05D005323 8.0e-223 776.9 566 71.9
Haze_07277 Corylus avellana HOM05D004180 ORTHO05D005323 1.8e-222 775.8 564 71.6
Gohir.A11G035300 Gossypium hirsutum HOM05D004180 ORTHO05D005323 1.8e-222 775.8 564 72.2
Glyma.04G192900 Glycine max HOM05D004180 ORTHO05D005323 2.3e-222 775.4 560 72.3
Hma1.2p1_0046F.1_g027540 Hydrangea macrophylla HOM05D004180 ORTHO05D005323 3.1e-222 775.0 559 72.6
CiPaw.12G035600 Carya illinoinensis HOM05D004180 ORTHO05D005323 5.2e-222 774.2 558 72.6
HanXRQChr02g0035141 Helianthus annuus HOM05D004180 ORTHO05D005323 5.2e-222 774.2 564 71.6
Potri.015G090500 Populus trichocarpa HOM05D004180 ORTHO05D005323 5.2e-222 774.2 561 72.4
Lsat_1_v5_gn_1_8721 Lactuca sativa HOM05D004180 ORTHO05D005323 1.2e-221 773.1 562 72.1
TWI14G0632 Tripterygium wilfordii HOM05D004180 ORTHO05D005323 1.2e-221 773.1 560 72.0
Lj1g0008389 Lotus japonicus HOM05D004180 ORTHO05D005323 1.5e-221 772.7 560 71.6
arahy.Tifrunner.gnm1.ann1.Y3SZAS Arachis hypogaea HOM05D004180 ORTHO05D005323 2.0e-221 772.3 565 71.2
Ca_16090_v3 Cicer arietinum L. HOM05D004180 ORTHO05D005323 4.4e-221 771.2 560 71.8
Lj5C100T5 Lonicera japonica HOM05D004180 ORTHO05D005323 5.8e-221 770.8 582 69.9
unitig_22.g5936 Utricularia gibba HOM05D004180 ORTHO05D005323 5.8e-221 770.8 560 72.5
Gohir.A07G053600 Gossypium hirsutum HOM05D004180 ORTHO05D005323 7.5e-221 770.4 562 72.1
Lalb_Chr08g0236941 Lupinus albus HOM05D004180 ORTHO05D005323 7.5e-221 770.4 562 71.9
TAR622G0515 Trochodendron aralioides HOM05D004180 ORTHO05D005323 7.5e-221 770.4 557 71.8
QL10p005240 Quercus lobata HOM05D004180 ORTHO05D005323 1.3e-220 769.6 560 71.4
Prupe.5G157100 Prunus persica HOM05D004180 ORTHO05D005323 1.7e-220 769.2 565 71.5
Manes.14G055300 Manihot esculenta HOM05D004180 ORTHO05D005323 4.9e-220 767.7 559 71.7
Potri.012G092800 Populus trichocarpa HOM05D004180 ORTHO05D005323 4.9e-220 767.7 561 72.0
Eucgr.B00149 Eucalyptus grandis HOM05D004180 ORTHO05D005323 6.4e-220 767.3 564 71.1
THA.LOC104811605 Tarenaya hassleriana HOM05D004180 ORTHO05D005323 8.3e-220 766.9 557 71.8
MD14G1163700 Malus domestica HOM05D004180 ORTHO05D005323 1.1e-219 766.5 564 71.3
VMungo1309G1699 Vigna mungo HOM05D004180 ORTHO05D005323 1.1e-219 766.5 560 71.2
Ciclev10019518m.g Citrus clementina HOM05D004180 ORTHO05D005323 1.4e-219 766.1 562 71.4
ECA247G0271 Erigeron canadensis HOM05D004180 ORTHO05D005323 1.4e-219 766.1 565 71.3
FAN13G2268 Fragaria x ananassa HOM05D004180 ORTHO05D005323 1.9e-219 765.8 563 71.4
EL10Ac7g18073 Beta vulgaris HOM05D004180 ORTHO05D005323 2.4e-219 765.4 567 70.7
FAN04G2334 Fragaria x ananassa HOM05D004180 ORTHO05D005323 2.4e-219 765.4 561 71.5
FAN08G3357 Fragaria x ananassa HOM05D004180 ORTHO05D005323 2.4e-219 765.4 561 71.5
FAN18G2865 Fragaria x ananassa HOM05D004180 ORTHO05D005323 3.2e-219 765.0 561 71.3
Sed0010285 Sechium edule HOM05D004180 ORTHO05D005323 4.1e-219 764.6 562 71.4
THA.LOC104803140 Tarenaya hassleriana HOM05D004180 ORTHO05D005323 5.4e-219 764.2 566 70.7
FvH4_5g07340 Fragaria vesca HOM05D004180 ORTHO05D005323 7.0e-219 763.8 561 71.3
Cpa.g.sc4.68 Carica papaya HOM05D004180 ORTHO05D005323 9.2e-219 763.5 564 70.9
Nn3g16580 Nelumbo nucifera HOM05D004180 ORTHO05D005323 9.2e-219 763.5 564 70.7
Phvul.009G168900 Phaseolus vulgaris HOM05D004180 ORTHO05D005323 9.2e-219 763.5 559 71.0
CANSAT80G2894 Cannabis sativa HOM05D004180 ORTHO05D005323 1.2e-218 763.1 564 70.9
Gorai.007G041800 Gossypium raimondii HOM05D004180 ORTHO05D005323 1.2e-218 763.1 596 68.1
Psat6g217640 Pisum sativum HOM05D004180 ORTHO05D005323 1.2e-218 763.1 560 70.7
Glyma.06G173000 Glycine max HOM05D004180 ORTHO05D005323 2.1e-218 762.3 560 71.1
RcHm_v2.0_Chr7g0191201 Rosa chinensis HOM05D004180 ORTHO05D005323 2.7e-218 761.9 563 71.0
MELO3C026234.2 Cucumis melo HOM05D004180 ORTHO05D005323 4.6e-218 761.1 562 71.2
Sp6g12400 Schrenkiella parvula HOM05D004180 ORTHO05D005323 4.6e-218 761.1 563 70.5
CARHR258210 Cardamine hirsuta HOM05D004180 ORTHO05D005323 6.0e-218 760.8 563 70.3
CsaV3_1G000820 Cucumis sativus L. HOM05D004180 ORTHO05D005323 1.0e-217 760.0 562 70.8
Migut.I00474 Erythranthe guttata HOM05D004180 ORTHO05D005323 1.7e-217 759.2 575 71.0
arahy.Tifrunner.gnm1.ann1.598RU2 Arachis hypogaea HOM05D004180 ORTHO05D005323 3.0e-217 758.4 586 68.3
Aa31LG3G5910 Aethionema arabicum HOM05D004180 ORTHO05D005323 3.9e-217 758.1 555 71.0
Medtr1g107255 Medicago truncatula HOM05D004180 ORTHO05D005323 3.9e-217 758.1 560 70.5
TPR.G3286 Trifolium pratense HOM05D004180 ORTHO05D005323 5.1e-217 757.7 560 70.2
Thhalv10013124m.g Eutrema salsugineum HOM05D004180 ORTHO05D005323 1.9e-216 755.7 555 70.6
AL8G24380 Arabidopsis lyrata HOM05D004180 ORTHO05D005323 2.5e-216 755.4 555 70.6
AT5G50320 Arabidopsis thaliana HOM05D004180 ORTHO05D005323 5.6e-216 754.2 555 70.5
A03p27780 Brassica napus HOM05D004180 ORTHO05D005323 5.6e-216 754.2 555 70.5
C03p33510 Brassica napus HOM05D004180 ORTHO05D005323 5.6e-216 754.2 555 70.5
BolC3t15672H Brassica oleracea HOM05D004180 ORTHO05D005323 5.6e-216 754.2 555 70.5
BraA03t11989Z Brassica rapa HOM05D004180 ORTHO05D005323 5.6e-216 754.2 555 70.5
Carub.0008s1036 Capsella rubella HOM05D004180 ORTHO05D005323 7.3e-216 753.8 555 70.5
Zm00001eb079280 Zea mays HOM05D004180 ORTHO05D005323 1.6e-215 752.7 567 69.8
ATR0824G280 Amborella trichopoda HOM05D004180 ORTHO05D005323 2.3e-214 748.8 563 69.8
Os04g0484900 Oryza sativa ssp. japonica HOM05D004180 ORTHO05D005323 2.0e-213 745.7 553 70.3
Zm00001eb425150 Zea mays HOM05D004180 ORTHO05D005323 2.0e-213 745.7 565 69.2
ClCG06G017620 Citrullus lanatus HOM05D004180 ORTHO05D005323 4.4e-213 744.6 598 67.4
PSO063G5665 Papaver somniferum HOM05D004180 ORTHO05D005323 5.8e-213 744.2 558 68.6
Sabra12G0067400 Salix brachista HOM05D004180 ORTHO05D005323 9.9e-213 743.4 616 65.4
Mapoly0095s0008 Marchantia polymorpha HOM05D004180 ORTHO05D005323 1.5e-208 729.6 551 67.3
HPP92_004592 Vanilla planifolia HOM05D004180 ORTHO05D005323 3.3e-208 728.4 563 68.6
Pp3c18_6090 Physcomitrium patens HOM05D004180 ORTHO05D005323 2.8e-207 725.3 564 66.8
Actinidia19386 Actinidia chinensis HOM05D004180 ORTHO05D005323 6.2e-207 724.2 501 75.6
CAN.G352.60 Capsicum annuum HOM05D004180 ORTHO05D005323 6.2e-207 724.2 521 72.6
SMO137G0131 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 9.2e-203 710.3 557 65.4
SMO170G0003 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 9.2e-203 710.3 557 65.4
AagrBONN_evm.TU.Sc2ySwM_344.3483 Anthoceros agrestis HOM05D004180 ORTHO05D005323 1.4e-198 696.4 539 65.9
Eucgr.L01338 Eucalyptus grandis HOM05D004180 ORTHO05D005323 7.6e-197 690.6 564 66.1
BcaB01g02900 Brassica carinata HOM05D004180 ORTHO05D005323 6.6e-193 677.6 521 68.3
Nitab4.5_0001311g0030 Nicotiana tabacum HOM05D004180 ORTHO05D005323 1.4e-190 669.8 458 75.5
Nitab4.5_0011188g0020 Nicotiana tabacum HOM05D004180 ORTHO05D005323 3.4e-189 665.2 458 75.1
BcaC01g04814 Brassica carinata HOM05D004180 ORTHO05D005323 4.2e-187 658.3 552 64.1
CDE02G3278 Ceratophyllum demersum HOM05D004180 ORTHO05D005323 7.1e-187 657.5 489 69.7
Nn4g22462 Nelumbo nucifera HOM05D004180 ORTHO05D005323 2.5e-184 649.0 495 68.9
MCO06G075 Micromonas commoda HOM05D004180 ORTHO05D005323 7.6e-181 637.5 540 61.3
SalBow5G4699 Salvia bowleyana HOM05D004180 ORTHO05D005323 5.3e-174 614.8 433 76.0
GSVIVG01007544001 Vitis vinifera HOM05D004180 ORTHO05D005323 3.4e-173 612.1 456 70.0
Cre07.g354100 Chlamydomonas reinhardtii HOM05D004180 ORTHO05D005323 9.7e-168 594.0 543 58.0
Aqoxy3G01433 Aquilegia oxysepala HOM05D004180 ORTHO05D005323 9.0e-166 587.4 388 77.3
MBI11_g17238_MAGBIO Magnolia biondii HOM05D004180 ORTHO05D005323 2.6e-165 585.9 396 76.5
vmacro23155 Vaccinium macrocarpon HOM05D004180 ORTHO05D005323 5.5e-155 551.6 464 65.3
vmacro16709 Vaccinium macrocarpon HOM05D004180 ORTHO05D005323 1.4e-153 547.0 483 63.8
FvH4_5g07450 Fragaria vesca HOM05D004180 ORTHO05D005323 3.2e-147 525.8 511 58.9
vmacro16658 Vaccinium macrocarpon HOM05D004180 ORTHO05D005323 1.0e-145 520.8 563 55.2
SMO170G0065 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 3.3e-144 515.8 346 74.3
Pp3c21_15940 Physcomitrium patens HOM05D004180 ORTHO05D005323 7.4e-144 514.6 546 52.9
Hma1.2p1_0046F.1_g027550 Hydrangea macrophylla HOM05D004180 ORTHO05D005323 1.3e-143 513.8 409 67.7
PGR083G1171 Punica granatum HOM05D004180 ORTHO05D005323 1.3e-143 513.8 269 92.6
Sc10g0010340 Simmondsia chinensis HOM05D004180 ORTHO05D005323 2.2e-143 513.1 269 92.6
SMO137G0321 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 1.6e-141 506.9 495 55.2
Peaxi162Scf00089g00242 Petunia axillaris HOM05D004180 ORTHO05D005323 8.5e-140 501.1 439 62.9
Gorai.003G153300 Gossypium raimondii HOM05D004180 ORTHO05D005323 3.2e-139 499.2 262 92.0
CBR_g17965 Chara braunii HOM05D004180 ORTHO05D005323 5.7e-136 488.4 267 87.3
Dinv38470 Davidia involucrata HOM05D004180 ORTHO05D005323 9.4e-131 471.1 386 65.8
SMO137G0375 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 1.3e-119 434.1 375 60.5
SalBow5G4032 Salvia bowleyana HOM05D004180 ORTHO05D005323 1.4e-113 414.1 307 70.7
MD06G1152200 Malus domestica HOM05D004180 ORTHO05D005323 1.2e-106 391.0 290 70.7
Cfa018893 Carpinus fangiana HOM05D004180 ORTHO05D005323 7.8e-101 371.7 457 50.3
MBI11_g36312_MAGBIO Magnolia biondii HOM05D004180 ORTHO05D005323 7.8e-101 371.7 398 54.5
SMO170G0034 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 1.1e-86 324.7 214 74.3
Gohir.D07G057966 Gossypium hirsutum HOM05D004180 ORTHO05D005323 6.6e-84 315.5 181 87.8
Gorai.001G061500 Gossypium raimondii HOM05D004180 ORTHO05D005323 1.1e-83 314.7 181 87.8
DCAR_025596 Daucus carota HOM05D004180 ORTHO05D005323 6.4e-79 298.9 284 58.1
SEGI_27035 Sequoiadendron giganteum HOM05D004180 ORTHO05D005323 2.1e-77 293.9 160 87.5
Dinv38471 Davidia involucrata HOM05D004180 ORTHO05D005323 3.3e-75 286.6 158 88.0
Sabra15G0112600 Salix brachista HOM05D004180 ORTHO05D005323 1.0e-68 265.0 173 79.2
Actinidia16192 Actinidia chinensis HOM05D004180 ORTHO05D005323 1.3e-66 258.1 181 75.1
AL664U10020 Arabidopsis lyrata HOM05D004180 ORTHO05D005323 1.8e-65 254.2 150 82.7
Gohir.D07G058032 Gossypium hirsutum HOM05D004180 ORTHO05D005323 2.0e-64 250.8 121 98.3
SEGI_32601 Sequoiadendron giganteum HOM05D004180 ORTHO05D005323 1.0e-63 248.4 149 82.6
BcaB01g02898 Brassica carinata HOM05D004180 ORTHO05D001269 2.6e-56 223.8 136 80.1
CBR_g17964 Chara braunii HOM05D004180 ORTHO05D005323 2.4e-49 200.7 133 75.9
SalBow5G1916 Salvia bowleyana HOM05D004180 ORTHO05D005323 1.5e-48 198.0 138 75.4
FvH4_5g07410 Fragaria vesca HOM05D004180 ORTHO05D005323 1.3e-47 194.9 105 88.6
CAN.G1231.25 Capsicum annuum HOM05D004180 ORTHO05D005323 2.9e-47 193.7 92 97.8
MD06G1155400 Malus domestica HOM05D004180 ORTHO05D005323 3.0e-44 183.7 113 82.3
RcHm_v2.0_Chr5g0026811 Rosa chinensis HOM05D004180 ORTHO05D005323 9.1e-33 145.6 98 76.5
FAN22G0033 Fragaria x ananassa HOM05D004180 ORTHO05D020683 9.4e-30 135.6 142 55.6
MD06G1154300 Malus domestica HOM05D004180 ORTHO05D005323 6.7e-28 129.4 75 86.7
CAN.G1231.26 Capsicum annuum HOM05D004180 ORTHO05D005323 7.5e-27 125.9 73 87.7
SMO170G0001 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 2.8e-26 124.0 73 76.7
MD06G1156700 Malus domestica HOM05D004180 ORTHO05D005323 6.3e-26 122.9 74 83.8
MD06G1155000 Malus domestica HOM05D004180 ORTHO05D005323 5.3e-25 119.8 74 82.4
SEGI_10248 Sequoiadendron giganteum HOM05D004180 ORTHO05D005323 1.2e-24 118.6 57 93.0
MD06G1155900 Malus domestica HOM05D004180 ORTHO05D005323 3.5e-24 117.1 182 44.5
SMO137G0281 Selaginella moellendorffii HOM05D004180 ORTHO05D020683 3.5e-24 117.1 90 67.8
FvH4_3g25041 Fragaria vesca HOM05D004180 ORTHO05D020683 1.5e-22 111.7 81 72.8
MD06G1153400 Malus domestica HOM05D004180 ORTHO05D005323 1.9e-22 111.3 182 42.3
Actinidia19390 Actinidia chinensis HOM05D004180 ORTHO05D005323 1.8e-17 94.7 52 86.5
MD06G1155200 Malus domestica HOM05D004180 ORTHO05D005323 4.1e-17 93.6 46 95.7
MD06G1156800 Malus domestica HOM05D004180 ORTHO05D005323 4.1e-17 93.6 46 95.7
MD06G1155500 Malus domestica HOM05D004180 ORTHO05D005323 5.0e-15 86.7 44 86.4
MD06G1152600 Malus domestica HOM05D004180 ORTHO05D020683 1.1e-14 85.5 49 83.7
MD06G1154200 Malus domestica HOM05D004180 ORTHO05D020683 1.5e-11 75.1 58 69.0
MD06G1152100 Malus domestica HOM05D004180 ORTHO05D020683 4.4e-11 73.6 58 67.2
Migut.I00277 Erythranthe guttata HOM05D004180 ORTHO05D005323 7.5e-11 72.8 88 53.4
MD06G1156600 Malus domestica HOM05D004180 ORTHO05D020683 3.8e-07 60.5 49 67.3


User provided reference genes

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