Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold31G12698 Striga asiatica HOM05D004857 ORTHO05D005663 2.5e-284 981.5 520 100.0
MSTRG.19426 Avicennia marina HOM05D004857 ORTHO05D005663 5.5e-239 830.9 568 76.4
SalBow6G1194 Salvia bowleyana HOM05D004857 ORTHO05D005663 1.0e-229 800.0 572 75.3
Migut.J00878 Erythranthe guttata HOM05D004857 ORTHO05D005663 1.5e-223 779.6 514 79.4
Dinv44702 Davidia involucrata HOM05D004857 ORTHO05D005663 3.4e-220 768.5 506 77.9
TAR383G0334 Trochodendron aralioides HOM05D004857 ORTHO05D005663 1.2e-217 760.0 505 77.8
Lj4A920T60 Lonicera japonica HOM05D004857 ORTHO05D005663 2.7e-217 758.8 510 77.3
CSS0030162 Camellia sinensis var. sinensis HOM05D004857 ORTHO05D005663 4.6e-217 758.1 508 76.6
Cc06_g12730 Coffea canephora HOM05D004857 ORTHO05D005663 1.3e-216 756.5 504 76.0
Actinidia39614 Actinidia chinensis HOM05D004857 ORTHO05D005663 4.3e-215 751.5 512 77.5
VMungo1309G0172 Vigna mungo HOM05D004857 ORTHO05D005663 9.5e-215 750.4 505 75.8
Phvul.009G223400 Phaseolus vulgaris HOM05D004857 ORTHO05D005663 2.1e-214 749.2 505 75.8
Rhsim05G0001900 Rhododendron simsii HOM05D004857 ORTHO05D005663 1.1e-213 746.9 507 76.1
MBI19_g37995_MAGBIO Magnolia biondii HOM05D004857 ORTHO05D005663 2.3e-213 745.7 507 76.1
Oeu041809.2 Olea europaea HOM05D004857 ORTHO05D005663 4.0e-213 745.0 488 78.5
vmacro17076 Vaccinium macrocarpon HOM05D004857 ORTHO05D005663 6.8e-213 744.2 508 76.4
Nn7g37725 Nelumbo nucifera HOM05D004857 ORTHO05D005663 1.5e-212 743.0 504 75.4
GSVIVG01015011001 Vitis vinifera HOM05D004857 ORTHO05D005663 9.8e-212 740.3 506 74.9
Sc08g0005030 Simmondsia chinensis HOM05D004857 ORTHO05D005663 2.9e-211 738.8 508 77.6
Nitab4.5_0001114g0050 Nicotiana tabacum HOM05D004857 ORTHO05D005663 3.2e-210 735.3 504 75.4
Ca_02281_v3 Cicer arietinum L. HOM05D004857 ORTHO05D005663 5.4e-210 734.6 506 73.9
vmacro03340 Vaccinium macrocarpon HOM05D004857 ORTHO05D005663 1.2e-209 733.4 523 74.6
arahy.Tifrunner.gnm1.ann1.N9ATPP Arachis hypogaea HOM05D004857 ORTHO05D005663 4.6e-209 731.5 518 73.9
Lj6g0010651 Lotus japonicus HOM05D004857 ORTHO05D005663 6.0e-209 731.1 509 74.5
Nitab4.5_0002665g0010 Nicotiana tabacum HOM05D004857 ORTHO05D005663 6.0e-209 731.1 504 75.0
Sabra18G0057000 Salix brachista HOM05D004857 ORTHO05D005663 7.8e-209 730.7 505 74.3
Glyma.09G074100 Glycine max HOM05D004857 ORTHO05D005663 2.3e-208 729.2 505 73.7
Glyma.15G183100 Glycine max HOM05D004857 ORTHO05D005663 3.9e-208 728.4 505 72.9
arahy.Tifrunner.gnm1.ann1.N970BB Arachis hypogaea HOM05D004857 ORTHO05D005663 5.1e-208 728.0 518 73.6
Ciclev10007866m.g Citrus clementina HOM05D004857 ORTHO05D005663 5.1e-208 728.0 507 76.1
Thecc.09G070000 Theobroma cacao HOM05D004857 ORTHO05D005663 5.6e-207 724.5 511 74.4
MELO3C009580.2 Cucumis melo HOM05D004857 ORTHO05D005663 1.6e-206 723.0 506 74.5
Lalb_Chr08g0232851 Lupinus albus HOM05D004857 ORTHO05D005663 3.6e-206 721.8 508 73.8
Potri.018G064100 Populus trichocarpa HOM05D004857 ORTHO05D005663 3.6e-206 721.8 503 74.0
Manes.16G090200 Manihot esculenta HOM05D004857 ORTHO05D005663 1.4e-205 719.9 508 75.6
Eucgr.C00765 Eucalyptus grandis HOM05D004857 ORTHO05D005663 3.1e-205 718.8 508 74.4
CsaV3_3G038370 Cucumis sativus L. HOM05D004857 ORTHO05D005663 5.2e-205 718.0 506 74.7
Gohir.A05G036200 Gossypium hirsutum HOM05D004857 ORTHO05D005663 5.2e-205 718.0 505 72.5
Aqoxy6G02713 Aquilegia oxysepala HOM05D004857 ORTHO05D005663 6.8e-205 717.6 503 72.2
Cfa002936 Carpinus fangiana HOM05D004857 ORTHO05D005663 1.2e-204 716.8 509 72.5
CANSAT56G1105 Cannabis sativa HOM05D004857 ORTHO05D005663 2.6e-204 715.7 510 73.7
CAN.G457.2 Capsicum annuum HOM05D004857 ORTHO05D005663 3.4e-204 715.3 504 73.2
Gorai.009G038200 Gossypium raimondii HOM05D004857 ORTHO05D005663 3.4e-204 715.3 505 72.5
Hund21824 Selenicereus undatus HOM05D004857 ORTHO05D005663 4.4e-204 714.9 506 74.9
PGR142G2122 Punica granatum HOM05D004857 ORTHO05D005663 5.8e-204 714.5 505 73.5
Oeu000275.2 Olea europaea HOM05D004857 ORTHO05D005663 9.9e-204 713.8 668 60.5
Sopen07g006280 Solanum pennellii HOM05D004857 ORTHO05D005663 9.9e-204 713.8 505 73.9
PGSC0003DMG401015931 Solanum tuberosum HOM05D004857 ORTHO05D005663 1.7e-203 713.0 505 73.5
Gohir.D05G037700 Gossypium hirsutum HOM05D004857 ORTHO05D005663 2.9e-203 712.2 505 72.3
Solyc07g017490.3 Solanum lycopersicum HOM05D004857 ORTHO05D005663 2.9e-203 712.2 505 73.7
Psat1g138640 Pisum sativum HOM05D004857 ORTHO05D005663 1.4e-202 709.9 506 72.7
COL.COLO4_21204 Corchorus olitorius HOM05D004857 ORTHO05D005663 4.1e-202 708.4 526 72.1
QL11p002992 Quercus lobata HOM05D004857 ORTHO05D005663 7.1e-202 707.6 514 72.4
Duzib187G1561 Durio zibethinus HOM05D004857 ORTHO05D005663 9.2e-202 707.2 505 71.9
CiPaw.03G200100 Carya illinoinensis HOM05D004857 ORTHO05D005663 1.2e-201 706.8 482 75.3
Medtr2g044200 Medicago truncatula HOM05D004857 ORTHO05D005663 1.2e-201 706.8 517 72.3
DCAR_024780 Daucus carota HOM05D004857 ORTHO05D005663 2.1e-201 706.1 515 72.6
Sed0019967 Sechium edule HOM05D004857 ORTHO05D005663 3.5e-201 705.3 506 72.9
Duzib168G0723 Durio zibethinus HOM05D004857 ORTHO05D005663 2.3e-200 702.6 495 74.1
EL10Ac4g09573 Beta vulgaris HOM05D004857 ORTHO05D005663 3.0e-200 702.2 521 71.8
RcHm_v2.0_Chr2g0095991 Rosa chinensis HOM05D004857 ORTHO05D005663 3.9e-200 701.8 508 71.1
MD15G1223900 Malus domestica HOM05D004857 ORTHO05D005663 6.6e-200 701.0 510 72.4
CDE05G0310 Ceratophyllum demersum HOM05D004857 ORTHO05D005663 4.3e-199 698.4 508 72.4
Lsat_1_v5_gn_5_138760 Lactuca sativa HOM05D004857 ORTHO05D005663 1.4e-197 693.3 500 73.6
Prupe.7G191600 Prunus persica HOM05D004857 ORTHO05D005663 1.8e-197 693.0 520 72.3
Actinidia30259 Actinidia chinensis HOM05D004857 ORTHO05D005663 1.2e-196 690.3 465 77.2
TWI32G0792 Tripterygium wilfordii HOM05D004857 ORTHO05D005663 4.9e-195 684.9 513 73.7
FvH4_1g09440 Fragaria vesca HOM05D004857 ORTHO05D005663 6.4e-195 684.5 508 69.9
FAN23G0125 Fragaria x ananassa HOM05D004857 ORTHO05D005663 4.2e-194 681.8 510 69.8
FAN19G2563 Fragaria x ananassa HOM05D004857 ORTHO05D005663 7.1e-194 681.0 510 69.6
MD02G1102700 Malus domestica HOM05D004857 ORTHO05D005663 7.1e-194 681.0 514 70.6
FAN28G2840 Fragaria x ananassa HOM05D004857 ORTHO05D005663 9.3e-194 680.6 510 69.6
ATR0681G246 Amborella trichopoda HOM05D004857 ORTHO05D005663 1.6e-193 679.9 506 69.8
FAN26G0201 Fragaria x ananassa HOM05D004857 ORTHO05D005663 3.5e-193 678.7 510 69.4
THA.LOC104819454 Tarenaya hassleriana HOM05D004857 ORTHO05D005663 2.3e-192 676.0 501 70.9
ClCG10G017920 Citrullus lanatus HOM05D004857 ORTHO05D005663 6.6e-192 674.5 595 62.7
Os11g0146700 Oryza sativa ssp. japonica HOM05D004857 ORTHO05D005663 2.1e-190 669.5 506 70.9
PSO104G0255 Papaver somniferum HOM05D004857 ORTHO05D005663 4.8e-190 668.3 508 71.5
AUR62006828 Chenopodium quinoa HOM05D004857 ORTHO05D005663 3.1e-189 665.6 510 70.0
FAN26G1404 Fragaria x ananassa HOM05D004857 ORTHO05D005663 9.0e-189 664.1 537 65.9
Zm00001eb405000 Zea mays HOM05D004857 ORTHO05D005663 2.6e-188 662.5 505 70.7
arahy.Tifrunner.gnm1.ann1.I7JLU4 Arachis hypogaea HOM05D004857 ORTHO05D005663 2.2e-187 659.4 518 69.9
TWI34G1843 Tripterygium wilfordii HOM05D004857 ORTHO05D005663 2.9e-187 659.1 510 69.0
HPP92_017869 Vanilla planifolia HOM05D004857 ORTHO05D005663 8.4e-187 657.5 506 68.8
Carub.0004s0646 Capsella rubella HOM05D004857 ORTHO05D005663 2.1e-185 652.9 491 74.1
Sp4g07340 Schrenkiella parvula HOM05D004857 ORTHO05D005663 2.1e-185 652.9 489 68.5
Thhalv10001246m.g Eutrema salsugineum HOM05D004857 ORTHO05D005663 1.7e-184 649.8 489 68.1
PSO421G0319 Papaver somniferum HOM05D004857 ORTHO05D005663 5.1e-184 648.3 516 68.6
Aa31LG5G9410 Aethionema arabicum HOM05D004857 ORTHO05D005663 1.5e-183 646.7 520 65.4
CDE05G0890 Ceratophyllum demersum HOM05D004857 ORTHO05D005663 2.5e-183 646.0 508 68.7
HanXRQChr12g0355141 Helianthus annuus HOM05D004857 ORTHO05D005663 4.3e-183 645.2 510 70.6
AUR62000486 Chenopodium quinoa HOM05D004857 ORTHO05D005663 1.4e-181 640.2 510 67.3
Peaxi162Scf01184g10017 Petunia axillaris HOM05D004857 ORTHO05D005663 1.4e-181 640.2 525 67.4
TPR.G27074 Trifolium pratense HOM05D004857 ORTHO05D005663 1.4e-181 640.2 460 71.1
SHI27983 Sapria himalayana HOM05D004857 ORTHO05D005663 4.5e-180 635.2 526 65.4
BcaC07g40818 Brassica carinata HOM05D004857 ORTHO05D005663 1.3e-179 633.6 491 67.2
C08p38110 Brassica napus HOM05D004857 ORTHO05D005663 1.3e-179 633.6 491 67.2
BolC8t51386H Brassica oleracea HOM05D004857 ORTHO05D005663 1.3e-179 633.6 491 67.2
BraA09t40926Z Brassica rapa HOM05D004857 ORTHO05D005663 4.2e-178 628.6 493 66.9
BcaB08g35315 Brassica carinata HOM05D004857 ORTHO05D005663 5.4e-178 628.2 498 66.1
A09p55180 Brassica napus HOM05D004857 ORTHO05D005663 7.1e-178 627.9 491 66.6
AT2G26460 Arabidopsis thaliana HOM05D004857 ORTHO05D005663 9.3e-178 627.5 521 64.1
Zm00001eb163350 Zea mays HOM05D004857 ORTHO05D005663 1.6e-177 626.7 487 68.0
AL4G19270 Arabidopsis lyrata HOM05D004857 ORTHO05D005663 4.8e-174 615.1 491 66.6
Os12g0143400 Oryza sativa ssp. japonica HOM05D004857 ORTHO05D005663 2.5e-170 602.8 505 66.3
CARHR114530 Cardamine hirsuta HOM05D004857 ORTHO05D005663 4.2e-170 602.1 485 67.8
SEGI_40202 Sequoiadendron giganteum HOM05D004857 ORTHO05D005663 1.1e-165 587.4 521 63.3
Haze_26072 Corylus avellana HOM05D004857 ORTHO05D005663 6.9e-165 584.7 418 72.2
Mapoly0117s0005 Marchantia polymorpha HOM05D004857 ORTHO05D005663 1.2e-153 547.4 527 59.0
Cpa.g.sc82.61 Carica papaya HOM05D004857 ORTHO05D005663 4.4e-135 485.7 384 68.5
BcaB08g35309 Brassica carinata HOM05D004857 ORTHO05D005663 1.0e-131 474.6 490 55.9
BcaB08g35312 Brassica carinata HOM05D004857 ORTHO05D005663 1.0e-131 474.6 490 55.9
BcaB08g35314 Brassica carinata HOM05D004857 ORTHO05D005663 1.0e-131 474.6 490 55.9
CBR_g41264 Chara braunii HOM05D004857 ORTHO05D005663 1.8e-120 437.2 550 48.0
SMO266G0005 Selaginella moellendorffii HOM05D004857 ORTHO05D005663 8.8e-120 434.9 539 49.5
ECA234G2807 Erigeron canadensis HOM05D000593 ORTHO05D000562 1.2e-119 434.5 348 66.7
Atru.chr7.1770 Acer truncatum HOM05D004857 ORTHO05D005663 1.9e-114 417.2 262 79.8
AagrBONN_evm.TU.Sc2ySwM_344.4798 Anthoceros agrestis HOM05D004857 ORTHO05D005663 7.5e-111 405.2 435 53.3
Lsat_1_v5_gn_7_48600 Lactuca sativa HOM05D004857 ORTHO05D005663 5.1e-83 312.8 195 80.0
unitig_699.g19262 Utricularia gibba HOM05D001486 ORTHO05D003845 2.9e-78 297.0 162 88.9
arahy.Tifrunner.gnm1.ann1.97VZCN Arachis hypogaea HOM05D004857 ORTHO05D005663 5.6e-74 282.7 159 87.4
ECA234G1433 Erigeron canadensis HOM05D000959 ORTHO05D000775 3.2e-69 266.9 169 78.1
HanXRQChr12g0354251 Helianthus annuus HOM05D004857 ORTHO05D005663 6.6e-67 259.2 488 40.0
HanXRQChr12g0355211 Helianthus annuus HOM05D004857 ORTHO05D005663 5.6e-66 256.1 415 40.7
Nn2g14232 Nelumbo nucifera HOM05D004857 ORTHO05D005663 1.1e-64 251.9 194 68.6
BcaB08g35308 Brassica carinata HOM05D004857 ORTHO05D005663 9.0e-64 248.8 196 66.3
Pp3c19_4680 Physcomitrium patens HOM05D004857 ORTHO05D005663 1.3e-62 245.0 296 49.0
BcaB08g35313 Brassica carinata HOM05D004857 ORTHO05D005663 2.7e-60 237.3 264 52.3
unitig_699.g19261 Utricularia gibba HOM05D004857 ORTHO05D005663 2.8e-57 227.3 257 52.9
TAR626G1635 Trochodendron aralioides HOM05D001862 ORTHO05D005663 4.9e-54 216.5 134 78.4
Atru.chr7.1769 Acer truncatum HOM05D004857 ORTHO05D005663 3.0e-51 207.2 142 72.5
SMO270G0044 Selaginella moellendorffii HOM05D004857 ORTHO05D005663 1.3e-49 201.8 137 72.3
Lsat_1_v5_gn_5_77300 Lactuca sativa HOM05D004857 ORTHO05D005663 3.6e-44 183.7 114 78.1
Cpa.g.sc3709.1 Carica papaya HOM05D004857 ORTHO05D005663 8.2e-41 172.6 101 81.2
Lsat_1_v5_gn_5_77280 Lactuca sativa HOM05D004857 ORTHO05D005663 7.7e-39 166.0 170 60.0
Cre16.g688750 Chlamydomonas reinhardtii HOM05D004857 ORTHO05D005663 1.9e-37 161.4 573 32.6
SMO270G0035 Selaginella moellendorffii HOM05D004857 ORTHO05D005663 3.2e-37 160.6 336 36.9
Lsat_1_v5_gn_7_48580 Lactuca sativa HOM05D004857 ORTHO05D005663 2.8e-33 147.5 145 58.6
Lsat_1_v5_gn_3_37601 Lactuca sativa HOM05D004857 ORTHO05D005663 2.9e-30 137.5 154 53.2
BcaB08g35310 Brassica carinata HOM05D004857 ORTHO05D005663 3.6e-28 130.6 155 50.3
Dinv32013 Davidia involucrata HOM05D004857 ORTHO05D005663 2.6e-26 124.4 76 80.3
QL05p089308 Quercus lobata HOM05D004857 ORTHO05D005663 1.7e-22 111.7 75 70.7
TPR.G21223 Trifolium pratense HOM05D004857 ORTHO05D005663 8.5e-22 109.4 58 91.4
CAN.G457.3 Capsicum annuum HOM05D004857 ORTHO05D005663 5.7e-18 96.7 53 88.7
TAR626G1095 Trochodendron aralioides HOM05D004857 ORTHO05D005663 5.3e-16 90.1 68 67.6
BcaB08g35311 Brassica carinata HOM05D004857 ORTHO05D005663 7.0e-16 89.7 137 40.1
Lsat_1_v5_gn_7_64781 Lactuca sativa HOM05D004857 ORTHO05D005663 7.0e-16 89.7 58 72.4
ECA247G2383 Erigeron canadensis HOM05D004857 ORTHO05D005663 4.5e-15 87.0 90 51.1
MCO14G054 Micromonas commoda HOM05D004857 ORTHO05D005663 4.7e-12 77.0 131 37.4
Rhsim09G0048200 Rhododendron simsii HOM05D004857 ORTHO05D005663 1.0e-11 75.9 89 51.7
PSO832G3983 Papaver somniferum HOM05D004857 ORTHO05D005663 2.3e-11 74.7 83 42.2
PSO407G0399 Papaver somniferum HOM05D001929 ORTHO05D002426 4.5e-07 60.5 53 49.1
PSO541G5242 Papaver somniferum HOM05D004857 ORTHO05D005663 1.7e-06 58.5 53 47.2


User provided reference genes

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