Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold2G00894 Striga asiatica HOM05D004298 ORTHO05D006236 0.0e+00 1461.0 736 100.0
SalBow3G4399 Salvia bowleyana HOM05D004298 ORTHO05D006236 0.0e+00 1253.8 750 84.5
Migut.N02606 Erythranthe guttata HOM05D004298 ORTHO05D006236 0.0e+00 1250.0 751 85.0
MSTRG.12319 Avicennia marina HOM05D004298 ORTHO05D006236 0.0e+00 1237.2 746 84.2
Oeu059093.1 Olea europaea HOM05D004298 ORTHO05D006236 0.0e+00 1237.2 746 84.2
Oeu002865.1 Olea europaea HOM05D004298 ORTHO05D006236 0.0e+00 1233.0 747 84.1
MSTRG.17806 Avicennia marina HOM05D004298 ORTHO05D006236 0.0e+00 1231.9 746 83.4
CiPaw.13G112600 Carya illinoinensis HOM05D004298 ORTHO05D006236 0.0e+00 1212.6 746 83.0
Nitab4.5_0000650g0220 Nicotiana tabacum HOM05D004298 ORTHO05D006236 0.0e+00 1212.6 743 83.4
Hma1.2p1_1031F.1_g250050 Hydrangea macrophylla HOM05D004298 ORTHO05D006236 0.0e+00 1208.4 748 82.1
Peaxi162Scf00270g00819 Petunia axillaris HOM05D004298 ORTHO05D006236 0.0e+00 1208.4 746 82.3
Nn2g10781 Nelumbo nucifera HOM05D004298 ORTHO05D006236 0.0e+00 1206.0 750 81.7
CSS0023657 Camellia sinensis var. sinensis HOM05D004298 ORTHO05D006236 0.0e+00 1205.7 749 81.4
CSS0023686 Camellia sinensis var. sinensis HOM05D004298 ORTHO05D006236 0.0e+00 1204.5 746 82.0
Manes.04G021700 Manihot esculenta HOM05D004298 ORTHO05D006236 0.0e+00 1204.5 746 81.9
CSS0037274 Camellia sinensis var. sinensis HOM05D004298 ORTHO05D006236 0.0e+00 1203.7 749 81.3
Manes.11G144700 Manihot esculenta HOM05D004298 ORTHO05D006236 0.0e+00 1203.7 743 82.5
CAN.G631.24 Capsicum annuum HOM05D004298 ORTHO05D006236 0.0e+00 1200.7 746 82.2
Thecc.09G340000 Theobroma cacao HOM05D004298 ORTHO05D006236 0.0e+00 1200.3 750 80.9
Actinidia20454 Actinidia chinensis HOM05D004298 ORTHO05D006236 0.0e+00 1199.9 747 81.9
Gorai.004G228600 Gossypium raimondii HOM05D004298 ORTHO05D006236 0.0e+00 1199.1 750 81.1
PGR102G1912 Punica granatum HOM05D004298 ORTHO05D006236 0.0e+00 1198.7 750 81.3
arahy.Tifrunner.gnm1.ann1.ETHX4E Arachis hypogaea HOM05D004298 ORTHO05D006236 0.0e+00 1198.3 747 81.5
Solyc11g069380.2 Solanum lycopersicum HOM05D004298 ORTHO05D006236 0.0e+00 1198.3 746 81.9
Cpa.g.sc216.13 Carica papaya HOM05D004298 ORTHO05D006236 0.0e+00 1198.0 750 81.5
Gohir.D08G214700 Gossypium hirsutum HOM05D004298 ORTHO05D006236 0.0e+00 1198.0 750 80.9
arahy.Tifrunner.gnm1.ann1.VBZF8N Arachis hypogaea HOM05D004298 ORTHO05D006236 0.0e+00 1197.2 747 81.4
Sopen11g028100 Solanum pennellii HOM05D004298 ORTHO05D006236 0.0e+00 1197.2 746 81.6
HanXRQChr07g0197541 Helianthus annuus HOM05D004298 ORTHO05D006236 0.0e+00 1194.5 746 81.2
MD11G1135000 Malus domestica HOM05D004298 ORTHO05D006236 0.0e+00 1193.7 751 81.0
CiPaw.14G080300 Carya illinoinensis HOM05D004298 ORTHO05D006236 0.0e+00 1192.6 747 81.1
DCAR_015537 Daucus carota HOM05D004298 ORTHO05D006236 0.0e+00 1192.6 743 81.0
Duzib168G1617 Durio zibethinus HOM05D004298 ORTHO05D006236 0.0e+00 1192.2 750 80.4
Lsat_1_v5_gn_2_98360 Lactuca sativa HOM05D004298 ORTHO05D006236 0.0e+00 1191.8 746 81.4
Lj2C1029T7 Lonicera japonica HOM05D004298 ORTHO05D006236 0.0e+00 1191.4 750 81.1
CANSAT54G2863 Cannabis sativa HOM05D004298 ORTHO05D006236 0.0e+00 1191.0 750 81.2
QL01p022296 Quercus lobata HOM05D004298 ORTHO05D006236 0.0e+00 1191.0 750 82.0
Prupe.6G101000 Prunus persica HOM05D004298 ORTHO05D006236 0.0e+00 1190.6 746 80.8
MD03G1117300 Malus domestica HOM05D004298 ORTHO05D006236 0.0e+00 1190.3 750 80.7
Gohir.A08G197500 Gossypium hirsutum HOM05D004298 ORTHO05D006236 0.0e+00 1189.9 756 80.3
VMungo1080G1181 Vigna mungo HOM05D004298 ORTHO05D006236 0.0e+00 1189.5 750 80.9
HanXRQChr14g0452871 Helianthus annuus HOM05D004298 ORTHO05D006236 0.0e+00 1188.7 746 80.8
TPR.G11486 Trifolium pratense HOM05D004298 ORTHO05D006236 0.0e+00 1187.6 750 80.9
Phvul.005G135800 Phaseolus vulgaris HOM05D004298 ORTHO05D006236 0.0e+00 1186.8 750 80.1
FvH4_3g32460 Fragaria vesca HOM05D004298 ORTHO05D006236 0.0e+00 1186.0 743 80.9
Psat5g278240 Pisum sativum HOM05D004298 ORTHO05D006236 0.0e+00 1186.0 750 80.5
Haze_23837 Corylus avellana HOM05D004298 ORTHO05D006236 0.0e+00 1184.1 771 79.1
Haze_23839 Corylus avellana HOM05D004298 ORTHO05D006236 0.0e+00 1184.1 771 79.1
RcHm_v2.0_Chr5g0059471 Rosa chinensis HOM05D004298 ORTHO05D006236 0.0e+00 1184.1 750 79.7
PGSC0003DMG400008050 Solanum tuberosum HOM05D004298 ORTHO05D006236 0.0e+00 1183.7 746 81.5
GSVIVG01025182001 Vitis vinifera HOM05D004298 ORTHO05D006236 0.0e+00 1183.7 750 79.7
FAN11G2723 Fragaria x ananassa HOM05D004298 ORTHO05D006236 0.0e+00 1182.9 743 80.8
FAN21G2260 Fragaria x ananassa HOM05D004298 ORTHO05D006236 0.0e+00 1182.9 750 79.7
FAN25G3839 Fragaria x ananassa HOM05D004298 ORTHO05D006236 0.0e+00 1182.5 750 79.7
Ca_01417_v3 Cicer arietinum L. HOM05D004298 ORTHO05D006236 0.0e+00 1182.2 750 80.7
Lalb_Chr14g0374701 Lupinus albus HOM05D004298 ORTHO05D006236 0.0e+00 1181.4 742 80.3
Medtr2g094160 Medicago truncatula HOM05D004298 ORTHO05D006236 0.0e+00 1181.4 750 80.5
Eucgr.B02495 Eucalyptus grandis HOM05D004298 ORTHO05D006236 0.0e+00 1181.0 747 80.9
TWI79G1123 Tripterygium wilfordii HOM05D004298 ORTHO05D006236 0.0e+00 1181.0 747 80.5
FAN16G0818 Fragaria x ananassa HOM05D004298 ORTHO05D006236 0.0e+00 1180.6 750 79.7
Glyma.13G326400 Glycine max HOM05D004298 ORTHO05D006236 0.0e+00 1180.6 752 80.2
Cc01_g11160 Coffea canephora HOM05D004298 ORTHO05D006236 0.0e+00 1180.2 746 81.0
unitig_27.g25060 Utricularia gibba HOM05D004298 ORTHO05D006236 0.0e+00 1178.3 724 82.9
Rhsim01G0217200 Rhododendron simsii HOM05D004298 ORTHO05D006236 0.0e+00 1176.4 740 80.7
Sabra09G0008100 Salix brachista HOM05D004298 ORTHO05D006236 0.0e+00 1175.2 743 80.2
TAR636G1671 Trochodendron aralioides HOM05D004298 ORTHO05D006236 0.0e+00 1174.1 748 80.6
Lj3g0003128 Lotus japonicus HOM05D004298 ORTHO05D006236 0.0e+00 1172.5 777 77.7
ECA238G4788 Erigeron canadensis HOM05D004298 ORTHO05D006236 0.0e+00 1172.1 746 79.9
TAR636G3405 Trochodendron aralioides HOM05D004298 ORTHO05D006236 0.0e+00 1171.0 748 80.3
TWI31G1183 Tripterygium wilfordii HOM05D004298 ORTHO05D006236 0.0e+00 1169.8 750 79.5
Ciclev10027881m.g Citrus clementina HOM05D004298 ORTHO05D006236 0.0e+00 1169.5 750 78.9
Potri.009G013400 Populus trichocarpa HOM05D004298 ORTHO05D006236 0.0e+00 1169.5 745 79.5
Dinv32749 Davidia involucrata HOM05D004298 ORTHO05D006236 0.0e+00 1166.4 712 83.0
Potri.004G210400 Populus trichocarpa HOM05D004298 ORTHO05D006236 0.0e+00 1165.6 744 79.0
PSO339G0771 Papaver somniferum HOM05D004298 ORTHO05D006236 0.0e+00 1164.4 749 78.9
EL10Ac9g22507 Beta vulgaris HOM05D004298 ORTHO05D006236 0.0e+00 1163.3 750 78.4
Lalb_Chr03g0027311 Lupinus albus HOM05D004298 ORTHO05D006236 0.0e+00 1162.1 752 78.9
PSO384G0735 Papaver somniferum HOM05D004298 ORTHO05D006236 0.0e+00 1161.7 749 78.6
Sed0018088 Sechium edule HOM05D004298 ORTHO05D006236 0.0e+00 1161.0 746 79.4
ATR0115G030 Amborella trichopoda HOM05D004298 ORTHO05D006236 0.0e+00 1159.4 753 78.6
arahy.Tifrunner.gnm1.ann1.068WZH Arachis hypogaea HOM05D004298 ORTHO05D006236 0.0e+00 1159.1 745 78.4
AUR62024990 Chenopodium quinoa HOM05D004298 ORTHO05D006236 0.0e+00 1159.1 750 78.1
arahy.Tifrunner.gnm1.ann1.X2DMBM Arachis hypogaea HOM05D004298 ORTHO05D006236 0.0e+00 1158.3 746 78.3
Sabra04G0142000 Salix brachista HOM05D004298 ORTHO05D006236 0.0e+00 1156.7 747 79.0
Aqoxy1G01246 Aquilegia oxysepala HOM05D004298 ORTHO05D006236 0.0e+00 1155.2 747 79.0
Ah.01g014360 Amaranthus hybridus HOM05D004298 ORTHO05D006236 0.0e+00 1154.8 746 78.2
THA.LOC104810855 Tarenaya hassleriana HOM05D004298 ORTHO05D006236 0.0e+00 1154.4 746 78.6
AL8G37190 Arabidopsis lyrata HOM05D004298 ORTHO05D006236 0.0e+00 1151.0 749 77.8
Thhalv10012774m.g Eutrema salsugineum HOM05D004298 ORTHO05D006236 0.0e+00 1151.0 749 77.3
Sp6g22170 Schrenkiella parvula HOM05D004298 ORTHO05D006236 0.0e+00 1151.0 749 77.7
Aa31LG1G12580 Aethionema arabicum HOM05D004298 ORTHO05D006236 0.0e+00 1150.6 745 77.4
TAR633G1103 Trochodendron aralioides HOM05D004298 ORTHO05D006236 0.0e+00 1149.8 712 81.3
BraA10t43856Z Brassica rapa HOM05D004298 ORTHO05D006236 0.0e+00 1149.4 749 77.7
Lalb_Chr24g0394611 Lupinus albus HOM05D004298 ORTHO05D006236 0.0e+00 1148.7 740 79.5
MELO3C005061.2 Cucumis melo HOM05D004298 ORTHO05D006236 0.0e+00 1147.1 749 78.0
Carub.0008s2128 Capsella rubella HOM05D004298 ORTHO05D006236 0.0e+00 1146.7 749 77.3
vmacro14439 Vaccinium macrocarpon HOM05D004298 ORTHO05D006236 0.0e+00 1146.7 827 72.9
AT5G60600 Arabidopsis thaliana HOM05D004298 ORTHO05D006236 0.0e+00 1145.6 749 77.2
CARHR274260 Cardamine hirsuta HOM05D004298 ORTHO05D006236 0.0e+00 1145.2 749 77.6
BcaB08g36355 Brassica carinata HOM05D004298 ORTHO05D006236 0.0e+00 1143.6 749 77.2
CsaV3_1G012820 Cucumis sativus L. HOM05D004298 ORTHO05D006236 0.0e+00 1143.6 749 77.7
A10p17790 Brassica napus HOM05D004298 ORTHO05D006236 0.0e+00 1142.5 749 77.2
Actinidia03730 Actinidia chinensis HOM05D004298 ORTHO05D006236 0.0e+00 1140.2 735 80.0
C09p53300 Brassica napus HOM05D004298 ORTHO05D006236 0.0e+00 1132.9 749 76.9
Os02g0603800 Oryza sativa ssp. japonica HOM05D004298 ORTHO05D006236 0.0e+00 1132.9 750 78.0
MBI07_g19314_MAGBIO Magnolia biondii HOM05D004298 ORTHO05D006236 0.0e+00 1129.0 715 80.6
BcaC04g19719 Brassica carinata HOM05D004298 ORTHO05D006236 0.0e+00 1124.4 746 76.7
SEGI_29082 Sequoiadendron giganteum HOM05D004298 ORTHO05D006236 0.0e+00 1124.4 743 76.6
Hund08138 Selenicereus undatus HOM05D004298 ORTHO05D006236 0.0e+00 1123.6 750 75.9
DCAR_006060 Daucus carota HOM05D004298 ORTHO05D006236 0.0e+00 1123.2 712 79.6
ClCG03G002170 Citrullus lanatus HOM05D004298 ORTHO05D006236 0.0e+00 1122.5 805 72.8
AUR62039630 Chenopodium quinoa HOM05D004298 ORTHO05D006236 0.0e+00 1121.7 762 75.5
Zm00001eb246530 Zea mays HOM05D004298 ORTHO05D006236 0.0e+00 1119.0 752 76.6
CDE02G3870 Ceratophyllum demersum HOM05D004298 ORTHO05D006236 0.0e+00 1117.4 751 75.8
Lj2C1029G11 Lonicera japonica HOM05D004298 ORTHO05D006236 0.0e+00 1113.6 746 78.0
BolC9t58204H Brassica oleracea HOM05D004298 ORTHO05D006236 0.0e+00 1107.0 782 73.4
Glyma.12G173200 Glycine max HOM05D004298 ORTHO05D006236 0.0e+00 1083.9 683 80.5
Atru.BG.119.p Acer truncatum HOM05D004298 ORTHO05D006236 1.0e-310 1069.7 675 80.3
CDE08G0282 Ceratophyllum demersum HOM05D004298 ORTHO05D006236 4.2e-309 1064.3 752 72.7
SMO146G0141 Selaginella moellendorffii HOM05D004298 ORTHO05D006236 5.5e-301 1037.3 689 76.3
Mapoly0048s0084 Marchantia polymorpha HOM05D004298 ORTHO05D006236 2.2e-297 1025.4 739 71.3
Pp3c19_16320 Physcomitrium patens HOM05D004298 ORTHO05D006236 3.8e-294 1014.6 751 69.1
Sc06g0010150 Simmondsia chinensis HOM05D004298 ORTHO05D006236 6.1e-292 1007.3 620 82.1
Pp3c22_14940 Physcomitrium patens HOM05D004298 ORTHO05D006236 1.5e-290 1002.7 705 71.6
HPP92_014714 Vanilla planifolia HOM05D004298 ORTHO05D006236 9.1e-288 993.4 638 79.2
Pp3c21_19070 Physcomitrium patens HOM05D004298 ORTHO05D006236 8.3e-281 970.3 705 69.4
AagrBONN_evm.TU.Sc2ySwM_117.2437 Anthoceros agrestis HOM05D004298 ORTHO05D006236 4.4e-274 948.0 662 73.6
Cre12.g490350 Chlamydomonas reinhardtii HOM05D004298 ORTHO05D006236 1.6e-220 770.0 670 58.8
MCO10G060 Micromonas commoda HOM05D004298 ORTHO05D006236 1.4e-208 730.3 700 55.7
Nitab4.5_0012814g0010 Nicotiana tabacum HOM05D004298 ORTHO05D006236 6.3e-204 714.9 400 89.0
Nitab4.5_0011114g0030 Nicotiana tabacum HOM05D004298 ORTHO05D006236 2.4e-203 713.0 400 88.8
COL.COLO4_18338 Corchorus olitorius HOM05D004298 ORTHO05D006236 8.5e-201 704.5 453 78.6
Atru.chr3.3635 Acer truncatum HOM05D004298 ORTHO05D006236 1.6e-199 700.3 466 76.6
Nitab4.5_0006333g0040 Nicotiana tabacum HOM05D004298 ORTHO05D006236 4.3e-197 692.2 537 70.8
PRCOL_00002263 Prasinoderma coloniale HOM05D004298 ORTHO05D006236 1.4e-195 687.2 646 57.4
Hma1.2p1_0391F.1_g142750 Hydrangea macrophylla HOM05D004298 ORTHO05D006236 1.4e-174 617.5 527 64.5
SGA_v2.0_scaffold84G26546 Striga asiatica HOM05D004298 ORTHO05D006236 2.1e-143 513.8 426 67.8
HanXRQChr13g0402271 Helianthus annuus HOM05D004298 ORTHO05D006236 1.2e-130 471.5 263 87.5
Hma1.2p1_1031F.1_g250040 Hydrangea macrophylla HOM05D004298 ORTHO05D006236 1.1e-99 368.6 220 84.1
HanXRQChr02g0034121 Helianthus annuus HOM05D004298 ORTHO05D006236 1.0e-68 265.8 142 90.8
CBR_g51121 Chara braunii HOM05D004298 ORTHO05D006236 2.4e-62 244.6 577 32.1
C09p53310 Brassica napus HOM05D004298 ORTHO05D006236 3.8e-60 237.3 141 81.6
Nitab4.5_0005621g0180 Nicotiana tabacum HOM05D004609 ORTHO05D005537 8.8e-57 226.1 170 70.6
Ca_28980_v3 Cicer arietinum L. HOM05D004298 ORTHO05D007370 3.0e-41 174.5 294 37.4
MBI12_g33358_MAGBIO Magnolia biondii HOM05D004298 ORTHO05D025791 4.1e-38 164.1 84 90.5
MBI12_g31227_MAGBIO Magnolia biondii HOM05D004298 ORTHO05D025791 5.6e-35 153.7 112 68.8
HanXRQChr12g0375701 Helianthus annuus HOM05D004298 ORTHO05D006236 4.3e-27 127.5 72 83.3
CAN.G907.27 Capsicum annuum HOM05D002478 ORTHO05D020307 1.5e-24 119.0 71 77.5
SGA_v2.0_scaffold12G06316 Striga asiatica HOM05D004298 ORTHO05D023169 3.4e-24 117.9 86 66.3
SGA_v2.0_scaffold290G47319 Striga asiatica HOM05D004298 ORTHO05D023169 2.7e-21 108.2 86 60.5
SEGI_39119 Sequoiadendron giganteum HOM05D004298 ORTHO05D006236 3.5e-21 107.8 69 72.5
Nn1g05516 Nelumbo nucifera HOM05D001057 ORTHO05D002028 1.5e-19 102.4 69 71.0
SEGI_37191 Sequoiadendron giganteum HOM05D004298 ORTHO05D050955 7.3e-19 100.1 222 34.7
CAN.G53.21 Capsicum annuum HOM05D002478 ORTHO05D020307 6.2e-18 97.1 79 67.1
arahy.Tifrunner.gnm1.ann1.BZC8YM Arachis hypogaea HOM05D004298 ORTHO05D000893 4.0e-17 94.4 105 52.4
Hma1.2p1_1050F.1_g251950 Hydrangea macrophylla HOM05D004298 ORTHO05D004816 4.0e-17 94.4 62 74.2
Hma1.2p1_0105F.1_g050690 Hydrangea macrophylla HOM05D004298 ORTHO05D004816 4.4e-16 90.9 115 44.3
TAR636G3504 Trochodendron aralioides HOM05D004298 ORTHO05D023169 4.1e-14 84.3 102 50.0
Peaxi162Scf00218g02111 Petunia axillaris HOM05D004298 ORTHO05D008833 7.1e-14 83.6 49 89.8
Cc00_g31230 Coffea canephora HOM05D004298 ORTHO05D006236 6.0e-13 80.5 47 78.7
SEGI_34190 Sequoiadendron giganteum HOM05D004298 ORTHO05D050955 3.9e-12 77.8 46 76.1
SGA_v2.0_scaffold28G11882 Striga asiatica HOM05D000239 ORTHO05D000484 5.1e-12 77.4 45 75.6
COL.COLO4_18339 Corchorus olitorius HOM05D004298 ORTHO05D160745 6.6e-12 77.0 71 54.9
TAR636G1311 Trochodendron aralioides HOM05D004298 ORTHO05D023169 1.9e-11 75.5 47 72.3
TAR381G0461 Trochodendron aralioides HOM05D004298 ORTHO05D023169 6.2e-10 70.5 59 59.3
CAN.G548.17 Capsicum annuum HOM05D002478 ORTHO05D005706 8.1e-10 70.1 43 69.8
SEGI_14813 Sequoiadendron giganteum HOM05D016845 ORTHO05D018122 2.4e-09 68.6 41 78.0
TAR156G0002 Trochodendron aralioides HOM05D000002 ORTHO05D000001 2.4e-09 68.6 48 64.6
TAR381G1634 Trochodendron aralioides HOM05D004298 ORTHO05D023169 9.0e-09 66.6 45 68.9
CAN.G970.17 Capsicum annuum HOM05D004298 ORTHO05D115446 7.1e-06 57.0 58 53.4


User provided reference genes

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