Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold297G47601 Striga asiatica HOM05D003132 ORTHO05D003736 7.9e-127 457.2 247 100.0
SGA_v2.0_scaffold28G12034 Striga asiatica HOM05D003132 ORTHO05D003736 7.5e-77 291.2 219 72.6
Oeu001990.2 Olea europaea HOM05D003132 ORTHO05D003736 4.0e-46 189.1 226 49.6
SalBow7G4391 Salvia bowleyana HOM05D003132 ORTHO05D003736 4.0e-46 189.1 198 54.5
SalBow7G2329 Salvia bowleyana HOM05D003132 ORTHO05D003736 5.2e-46 188.7 198 54.5
Nitab4.5_0002247g0160 Nicotiana tabacum HOM05D003132 ORTHO05D003736 4.4e-45 185.7 233 48.9
Nitab4.5_0004014g0020 Nicotiana tabacum HOM05D003132 ORTHO05D003736 4.4e-45 185.7 233 48.9
Sopen01g040690 Solanum pennellii HOM05D003132 ORTHO05D003736 5.8e-45 185.3 246 44.7
PGSC0003DMG400027521 Solanum tuberosum HOM05D003132 ORTHO05D003736 7.6e-45 184.9 223 48.4
Solyc01g096990.4 Solanum lycopersicum HOM05D003132 ORTHO05D003736 9.9e-45 184.5 246 44.3
CSS0019182 Camellia sinensis var. sinensis HOM05D003132 ORTHO05D003736 2.2e-44 183.3 220 48.2
Migut.C01198 Erythranthe guttata HOM05D003132 ORTHO05D003736 2.9e-44 183.0 226 48.7
Oeu039582.2 Olea europaea HOM05D003132 ORTHO05D003736 2.9e-44 183.0 197 53.3
CAN.G134.60 Capsicum annuum HOM05D003132 ORTHO05D003736 4.2e-43 179.1 233 47.2
Dinv26724 Davidia involucrata HOM05D003132 ORTHO05D003736 7.1e-43 178.3 236 46.6
Actinidia29433 Actinidia chinensis HOM05D003132 ORTHO05D003736 1.2e-42 177.6 231 47.2
TWI56G0630 Tripterygium wilfordii HOM05D003132 ORTHO05D003736 2.7e-42 176.4 220 45.9
Dinv27388 Davidia involucrata HOM05D003132 ORTHO05D003736 6.0e-42 175.3 238 45.8
Prupe.1G506400 Prunus persica HOM05D003132 ORTHO05D003736 1.5e-40 170.6 238 45.4
Cpa.g.sc828.2 Carica papaya HOM05D003132 ORTHO05D003736 1.9e-40 170.2 247 44.5
Peaxi162Scf00647g00129 Petunia axillaris HOM05D003132 ORTHO05D003736 1.9e-40 170.2 221 48.4
Ciclev10001011m.g Citrus clementina HOM05D003132 ORTHO05D003736 3.3e-40 169.5 247 42.5
Haze_00528 Corylus avellana HOM05D003132 ORTHO05D003736 3.3e-40 169.5 237 44.7
PGR044G0368 Punica granatum HOM05D003132 ORTHO05D003736 3.3e-40 169.5 225 43.1
Cfa015956 Carpinus fangiana HOM05D003132 ORTHO05D003736 4.3e-40 169.1 224 46.9
CiPaw.06G024400 Carya illinoinensis HOM05D003132 ORTHO05D003736 1.3e-39 167.5 221 46.2
Haze_00527 Corylus avellana HOM05D003132 ORTHO05D003736 1.6e-39 167.2 213 47.4
Gohir.D06G041500 Gossypium hirsutum HOM05D003132 ORTHO05D003736 2.1e-39 166.8 219 44.7
Lj7C306G6 Lonicera japonica HOM05D000316 ORTHO05D000374 2.1e-39 166.8 218 46.8
Rhsim11G0064900 Rhododendron simsii HOM05D003132 ORTHO05D003736 2.1e-39 166.8 199 49.2
FAN13G2880 Fragaria x ananassa HOM05D003132 ORTHO05D003736 6.2e-39 165.2 217 46.1
Duzib041G0476 Durio zibethinus HOM05D003132 ORTHO05D003736 8.1e-39 164.9 230 44.3
CiPaw.05G229400 Carya illinoinensis HOM05D003132 ORTHO05D003736 1.1e-38 164.5 198 50.0
DCAR_020428 Daucus carota HOM05D003132 ORTHO05D003736 1.1e-38 164.5 219 43.4
Gohir.A06G040500 Gossypium hirsutum HOM05D003132 ORTHO05D003736 1.8e-38 163.7 219 43.8
RcHm_v2.0_Chr7g0240821 Rosa chinensis HOM05D003132 ORTHO05D003736 1.8e-38 163.7 222 46.4
Lalb_Chr11g0065661 Lupinus albus HOM05D003132 ORTHO05D003736 3.1e-38 162.9 223 43.9
Sc01g0001580 Simmondsia chinensis HOM05D003132 ORTHO05D003736 3.1e-38 162.9 224 44.6
Thecc.08G116200 Theobroma cacao HOM05D003132 ORTHO05D003736 3.1e-38 162.9 210 45.2
Gorai.010G046700 Gossypium raimondii HOM05D003132 ORTHO05D003736 4.0e-38 162.5 219 44.3
MD15G1358700 Malus domestica HOM05D003132 ORTHO05D003736 4.0e-38 162.5 236 43.2
Lj1g0008302 Lotus japonicus HOM05D003132 ORTHO05D003736 9.0e-38 161.4 190 47.4
Ca_25763_v3 Cicer arietinum L. HOM05D003132 ORTHO05D003736 1.2e-37 161.0 225 42.7
ECA238G0880 Erigeron canadensis HOM05D003132 ORTHO05D003736 1.2e-37 161.0 215 45.6
Aa31LG3G17710 Aethionema arabicum HOM05D003132 ORTHO05D003736 1.5e-37 160.6 223 42.2
Psat5g133920 Pisum sativum HOM05D003132 ORTHO05D003736 1.5e-37 160.6 215 43.7
FAN04G1930 Fragaria x ananassa HOM05D003132 ORTHO05D003736 2.6e-37 159.8 217 45.2
MD00G1104300 Malus domestica HOM05D003132 ORTHO05D003736 2.6e-37 159.8 230 42.2
BcaC05g28420 Brassica carinata HOM05D003132 ORTHO05D003736 3.4e-37 159.5 221 42.5
TPR.G32950 Trifolium pratense HOM05D003132 ORTHO05D003736 4.4e-37 159.1 215 44.2
Thhalv10020497m.g Eutrema salsugineum HOM05D003132 ORTHO05D003736 5.8e-37 158.7 227 41.9
BraA05t21832Z Brassica rapa HOM05D003132 ORTHO05D003736 7.6e-37 158.3 220 41.8
BolC5t33226H Brassica oleracea HOM05D003132 ORTHO05D003736 9.9e-37 157.9 221 42.1
Manes.02G158500 Manihot esculenta HOM05D003132 ORTHO05D003736 9.9e-37 157.9 197 45.7
FAN08G0026 Fragaria x ananassa HOM05D003132 ORTHO05D003736 1.3e-36 157.5 217 44.2
BcaB06g26045 Brassica carinata HOM05D003132 ORTHO05D003736 1.7e-36 157.1 211 43.6
FvH4_5g38820 Fragaria vesca HOM05D003132 ORTHO05D003736 1.7e-36 157.1 215 44.2
Glyma.04G254000 Glycine max HOM05D003132 ORTHO05D003736 1.7e-36 157.1 215 43.7
TAR624G0618 Trochodendron aralioides HOM05D003132 ORTHO05D003736 2.9e-36 156.4 227 43.2
VMungo1309G0264 Vigna mungo HOM05D003132 ORTHO05D003736 2.9e-36 156.4 229 41.9
COL.COLO4_21818 Corchorus olitorius HOM05D003132 ORTHO05D003736 3.8e-36 156.0 210 43.3
FAN18G1429 Fragaria x ananassa HOM05D003132 ORTHO05D003736 4.9e-36 155.6 215 43.7
Potri.005G171500 Populus trichocarpa HOM05D003132 ORTHO05D003736 4.9e-36 155.6 229 43.2
Phvul.009G026000 Phaseolus vulgaris HOM05D003132 ORTHO05D003736 8.4e-36 154.8 229 41.5
A05p29830 Brassica napus HOM05D003132 ORTHO05D003736 1.1e-35 154.5 221 41.6
Manes.18G072550 Manihot esculenta HOM05D003132 ORTHO05D003736 1.1e-35 154.5 225 42.7
C05p45020 Brassica napus HOM05D003132 ORTHO05D003736 1.4e-35 154.1 221 42.5
Nn1g08540 Nelumbo nucifera HOM05D003132 ORTHO05D003736 1.4e-35 154.1 204 46.1
PSO017G5000 Papaver somniferum HOM05D003132 ORTHO05D003736 1.4e-35 154.1 229 41.0
Medtr3g073360 Medicago truncatula HOM05D003132 ORTHO05D003736 1.9e-35 153.7 206 43.7
QL12p035360 Quercus lobata HOM05D003132 ORTHO05D003736 1.9e-35 153.7 202 49.5
Glyma.06G108200 Glycine max HOM05D003132 ORTHO05D003736 2.4e-35 153.3 213 41.8
Sabra05G0129000 Salix brachista HOM05D003132 ORTHO05D003736 2.4e-35 153.3 238 43.3
Hund20801 Selenicereus undatus HOM05D003132 ORTHO05D003736 2.4e-35 153.3 213 44.1
AL3G33220 Arabidopsis lyrata HOM05D003132 ORTHO05D003736 3.2e-35 152.9 219 42.5
HanXRQChr14g0440811 Helianthus annuus HOM05D003132 ORTHO05D003736 3.2e-35 152.9 210 49.5
unitig_21.g20190 Utricularia gibba HOM05D003132 ORTHO05D003736 3.2e-35 152.9 230 43.5
vmacro00793 Vaccinium macrocarpon HOM05D003132 ORTHO05D003736 4.2e-35 152.5 190 49.5
CARHR095280 Cardamine hirsuta HOM05D003132 ORTHO05D003736 5.4e-35 152.1 220 40.9
Thhalv10012815m.g Eutrema salsugineum HOM05D003132 ORTHO05D003736 7.1e-35 151.8 212 42.0
PSO170G1030 Papaver somniferum HOM05D003132 ORTHO05D003736 7.1e-35 151.8 195 44.1
TAR628G0266 Trochodendron aralioides HOM05D003132 ORTHO05D003736 9.3e-35 151.4 229 41.0
MBI03_g11133_MAGBIO Magnolia biondii HOM05D003132 ORTHO05D003736 2.1e-34 150.2 201 44.3
Aqoxy5G02472 Aquilegia oxysepala HOM05D003132 ORTHO05D003736 2.7e-34 149.8 244 40.2
AT3G19770 Arabidopsis thaliana HOM05D003132 ORTHO05D003736 7.9e-34 148.3 222 42.3
THA.LOC104806806 Tarenaya hassleriana HOM05D003132 ORTHO05D003736 1.3e-33 147.5 233 41.6
Lsat_1_v5_gn_2_115101 Lactuca sativa HOM05D003132 ORTHO05D003736 1.7e-33 147.1 210 50.5
EL10Ac1g00043 Beta vulgaris HOM05D003132 ORTHO05D003736 2.3e-33 146.7 232 46.1
BcaB08g37215 Brassica carinata HOM05D003132 ORTHO05D003736 3.0e-33 146.4 221 41.2
Carub.0003s1964 Capsella rubella HOM05D003132 ORTHO05D003736 3.9e-33 146.0 186 45.7
BcaB08g37217 Brassica carinata HOM05D003132 ORTHO05D003736 1.1e-32 144.4 223 40.8
BolC9t59562H Brassica oleracea HOM05D003132 ORTHO05D003736 1.1e-32 144.4 220 41.4
HanXRQChr15g0496671 Helianthus annuus HOM05D003132 ORTHO05D003736 1.1e-32 144.4 216 42.6
Sp3g17790 Schrenkiella parvula HOM05D003132 ORTHO05D003736 1.1e-32 144.4 223 40.8
Ah.05g172730 Amaranthus hybridus HOM05D003132 ORTHO05D003736 2.5e-32 143.3 229 41.9
MELO3C008519.2 Cucumis melo HOM05D003132 ORTHO05D003736 3.3e-32 142.9 185 46.5
A10p27920 Brassica napus HOM05D003132 ORTHO05D003736 5.6e-32 142.1 220 40.9
BraA10t44841Z Brassica rapa HOM05D003132 ORTHO05D003736 5.6e-32 142.1 220 40.9
ClCG06G009880 Citrullus lanatus HOM05D003132 ORTHO05D003736 5.6e-32 142.1 193 46.6
Lsat_1_v5_gn_9_67980 Lactuca sativa HOM05D003132 ORTHO05D003736 9.6e-32 141.4 239 39.3
arahy.Tifrunner.gnm1.ann1.KS02B5 Arachis hypogaea HOM05D003132 ORTHO05D003736 1.6e-31 140.6 241 39.0
arahy.Tifrunner.gnm1.ann1.M9VU1N Arachis hypogaea HOM05D003132 ORTHO05D003736 1.6e-31 140.6 241 39.0
Sp6g33990 Schrenkiella parvula HOM05D003132 ORTHO05D003736 2.1e-31 140.2 215 40.0
Sed0019762 Sechium edule HOM05D003132 ORTHO05D003736 2.8e-31 139.8 184 44.6
ECA246G0273 Erigeron canadensis HOM05D003132 ORTHO05D003736 4.8e-31 139.0 210 43.3
CsaV3_2G011340 Cucumis sativus L. HOM05D003132 ORTHO05D003736 8.1e-31 138.3 184 45.7
Zm00001eb398120 Zea mays HOM05D003132 ORTHO05D003736 1.4e-30 137.5 214 37.4
AUR62004688 Chenopodium quinoa HOM05D003132 ORTHO05D003736 1.8e-30 137.1 245 45.3
ATR0171G023 Amborella trichopoda HOM05D003132 ORTHO05D003736 3.4e-29 132.9 195 42.1
AT5G09320 Arabidopsis thaliana HOM05D003132 ORTHO05D003736 1.7e-28 130.6 190 40.5
HPP92_002181 Vanilla planifolia HOM05D003132 ORTHO05D003736 1.7e-28 130.6 210 42.9
CDE06G1857 Ceratophyllum demersum HOM05D003132 ORTHO05D003736 2.2e-28 130.2 198 41.9
SGA_v2.0_scaffold118G32441 Striga asiatica HOM05D003132 ORTHO05D003736 3.8e-28 129.4 210 41.9
CDE06G0428 Ceratophyllum demersum HOM05D003132 ORTHO05D003736 6.4e-28 128.6 193 43.0
ATR0495G010 Amborella trichopoda HOM05D003132 ORTHO05D003736 1.1e-27 127.9 195 41.0
Carub.0006s0787 Capsella rubella HOM05D003132 ORTHO05D003736 9.3e-27 124.8 191 39.8
CARHR204070 Cardamine hirsuta HOM05D003132 ORTHO05D003736 7.9e-26 121.7 192 38.0
AUR62023605 Chenopodium quinoa HOM05D003132 ORTHO05D003736 5.1e-25 119.0 211 37.4
SEGI_30049 Sequoiadendron giganteum HOM05D003132 ORTHO05D003736 8.1e-23 111.7 214 36.0
Eucgr.F03739 Eucalyptus grandis HOM05D003132 ORTHO05D003736 1.5e-21 107.5 175 41.7
SMO356G0397 Selaginella moellendorffii HOM05D003132 ORTHO05D003736 7.6e-21 105.1 181 39.8
Pp3c23_18370 Physcomitrium patens HOM05D003132 ORTHO05D003736 1.1e-19 101.3 218 34.9
Mapoly0003s0258 Marchantia polymorpha HOM05D003132 ORTHO05D003736 1.2e-18 97.8 180 36.7
C09p68030 Brassica napus HOM05D003132 ORTHO05D003736 2.7e-18 96.7 198 34.8
Dinv22067 Davidia involucrata HOM05D003132 ORTHO05D003736 4.6e-18 95.9 201 32.3
C05p44900 Brassica napus HOM05D003132 ORTHO05D033514 2.3e-17 93.6 153 39.9
BcaC05g28406 Brassica carinata HOM05D003132 ORTHO05D003736 8.7e-17 91.7 155 38.1
Atru.chr13.1312 Acer truncatum HOM05D003132 ORTHO05D026271 4.8e-15 85.9 60 61.7
Rhsim12G0001000 Rhododendron simsii HOM05D003132 ORTHO05D003736 1.1e-14 84.7 180 31.7
vmacro00917 Vaccinium macrocarpon HOM05D003132 ORTHO05D003736 6.9e-14 82.0 180 31.1
ATR1089G070 Amborella trichopoda HOM05D003132 ORTHO05D003736 2.0e-13 80.5 180 34.4
FAN24G0668 Fragaria x ananassa HOM05D003132 ORTHO05D003736 1.0e-12 78.2 219 29.7
Actinidia01536 Actinidia chinensis HOM05D003132 ORTHO05D003736 1.3e-12 77.8 213 29.6
GSVIVG01008947001 Vitis vinifera HOM05D003132 ORTHO05D003736 1.3e-12 77.8 122 45.9
Atru.chr13.1311 Acer truncatum HOM05D003132 ORTHO05D003736 2.2e-12 77.0 93 49.5
Atru.chr13.1355 Acer truncatum HOM05D003132 ORTHO05D003736 2.2e-12 77.0 93 49.5
VMungo1080G0294 Vigna mungo HOM05D003132 ORTHO05D003736 5.0e-12 75.9 215 30.2
MD10G1001000 Malus domestica HOM05D003132 ORTHO05D003736 6.5e-12 75.5 197 34.0
RcHm_v2.0_Chr6g0249521 Rosa chinensis HOM05D003132 ORTHO05D003736 6.5e-12 75.5 175 32.0
TAR628G0652 Trochodendron aralioides HOM05D003132 ORTHO05D003736 6.5e-12 75.5 179 30.2
FAN19G2774 Fragaria x ananassa HOM05D003132 ORTHO05D003736 1.1e-11 74.7 200 29.0
Lj9C693G4 Lonicera japonica HOM05D003132 ORTHO05D003736 1.1e-11 74.7 204 29.4
Prupe.8G002200 Prunus persica HOM05D003132 ORTHO05D003736 1.4e-11 74.3 175 32.0
FvH4_2g00230 Fragaria vesca HOM05D003132 ORTHO05D003736 1.9e-11 73.9 175 31.4
Duzib177G0974 Durio zibethinus HOM05D003132 ORTHO05D003736 3.2e-11 73.2 180 31.7
Hma1.2p1_0378F.1_g139670 Hydrangea macrophylla HOM05D003132 ORTHO05D003736 3.2e-11 73.2 179 32.4
Phvul.005G006600 Phaseolus vulgaris HOM05D003132 ORTHO05D003736 3.2e-11 73.2 205 29.8
Gohir.A08G230900 Gossypium hirsutum HOM05D003132 ORTHO05D003736 7.2e-11 72.0 174 32.8
QL09p001110 Quercus lobata HOM05D003132 ORTHO05D003736 7.2e-11 72.0 177 29.4
TWI12G0091 Tripterygium wilfordii HOM05D003132 ORTHO05D003736 9.3e-11 71.6 203 29.6
Gorai.004G268000 Gossypium raimondii HOM05D003132 ORTHO05D003736 1.6e-10 70.9 175 32.0
CiPaw.03G011700 Carya illinoinensis HOM05D003132 ORTHO05D003736 3.5e-10 69.7 175 32.0
Gohir.D08G251300 Gossypium hirsutum HOM05D003132 ORTHO05D003736 3.5e-10 69.7 175 32.0
Ciclev10020271m.g Citrus clementina HOM05D003132 ORTHO05D003736 4.6e-10 69.3 185 31.4
Manes.18G119900 Manihot esculenta HOM05D003132 ORTHO05D003736 4.6e-10 69.3 195 30.3
Nn5g27185 Nelumbo nucifera HOM05D003132 ORTHO05D003736 7.9e-10 68.6 180 26.7
Medtr3g009180 Medicago truncatula HOM05D003132 ORTHO05D003736 1.3e-09 67.8 215 28.8
Cfa021494 Carpinus fangiana HOM05D003132 ORTHO05D003736 2.3e-09 67.0 176 30.1
Haze_14017 Corylus avellana HOM05D003132 ORTHO05D003736 3.0e-09 66.6 172 29.7
Ca_14120_v3 Cicer arietinum L. HOM05D003132 ORTHO05D003736 3.9e-09 66.2 196 29.6
Lj3g0025144 Lotus japonicus HOM05D003132 ORTHO05D003736 3.9e-09 66.2 205 26.8
CSS0047902 Camellia sinensis var. sinensis HOM05D003132 ORTHO05D003736 6.7e-09 65.5 198 27.8
arahy.Tifrunner.gnm1.ann1.F59MVU Arachis hypogaea HOM05D003132 ORTHO05D003736 8.7e-09 65.1 211 28.9
Glyma.04G116900 Glycine max HOM05D003132 ORTHO05D003736 1.1e-08 64.7 182 28.0
Potri.019G066200 Populus trichocarpa HOM05D003132 ORTHO05D003736 1.1e-08 64.7 188 29.3
arahy.Tifrunner.gnm1.ann1.M3HMN7 Arachis hypogaea HOM05D003132 ORTHO05D003736 1.5e-08 64.3 211 28.9
COL.COLO4_25069 Corchorus olitorius HOM05D003132 ORTHO05D003736 1.5e-08 64.3 199 27.6
PGR102G0292 Punica granatum HOM05D003132 ORTHO05D003736 1.5e-08 64.3 189 30.2
TPR.G16695 Trifolium pratense HOM05D003132 ORTHO05D003736 2.5e-08 63.5 189 29.6
SHI23772 Sapria himalayana HOM05D003132 ORTHO05D003736 3.3e-08 63.2 133 35.3
Eucgr.F04096 Eucalyptus grandis HOM05D003132 ORTHO05D003736 2.2e-07 60.5 179 29.1
Cpa.g.sc249.17 Carica papaya HOM05D003132 ORTHO05D003736 2.8e-07 60.1 180 26.7
Sabra19G0078500 Salix brachista HOM05D003132 ORTHO05D003736 3.7e-07 59.7 194 29.4
CDE04G2334 Ceratophyllum demersum HOM05D003132 ORTHO05D003736 1.4e-06 57.8 181 26.5
CBR_g241 Chara braunii HOM05D003132 ORTHO05D003736 3.1e-06 56.6 60 45.0
MBI03_g39997_MAGBIO Magnolia biondii HOM05D003132 ORTHO05D003736 4.1e-06 56.2 201 25.4


User provided reference genes

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