Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold295G47507 Striga asiatica HOM05D004190 ORTHO05D004692 1.5e-100 369.8 222 100.0
SGA_v2.0_scaffold177G39450 Striga asiatica HOM05D004190 ORTHO05D004692 6.1e-54 214.9 245 59.6
Migut.N02470 Erythranthe guttata HOM05D004190 ORTHO05D004692 6.4e-35 151.8 189 49.7
MSTRG.17696 Avicennia marina HOM05D004190 ORTHO05D004692 1.7e-32 143.7 187 49.7
SalBow3G0001 Salvia bowleyana HOM05D004190 ORTHO05D004692 8.9e-29 131.3 227 43.2
unitig_8.g3659 Utricularia gibba HOM05D004190 ORTHO05D004692 3.8e-19 99.4 128 46.1
Oeu048854.1 Olea europaea HOM05D004190 ORTHO05D004692 1.3e-16 90.9 82 57.3
Nitab4.5_0003516g0050 Nicotiana tabacum HOM05D004190 ORTHO05D004692 1.9e-15 87.0 159 38.4
Peaxi162Scf00224g00513 Petunia axillaris HOM05D004190 ORTHO05D004692 3.3e-15 86.3 159 39.6
HanXRQChr03g0089211 Helianthus annuus HOM05D004190 ORTHO05D004692 4.3e-15 85.9 74 59.5
Nitab4.5_0001135g0020 Nicotiana tabacum HOM05D004190 ORTHO05D004692 4.3e-15 85.9 156 37.8
Actinidia07264 Actinidia chinensis HOM05D004190 ORTHO05D004692 2.1e-14 83.6 156 37.8
Cc01_g08740 Coffea canephora HOM05D004190 ORTHO05D004692 2.4e-13 80.1 187 35.3
Sed0018693 Sechium edule HOM05D004190 ORTHO05D004692 3.4e-12 76.3 176 34.7
PGSC0003DMG400026344 Solanum tuberosum HOM05D004190 ORTHO05D004692 5.8e-12 75.5 178 37.6
Solyc11g068740.2 Solanum lycopersicum HOM05D004190 ORTHO05D004692 9.9e-12 74.7 167 35.9
Sopen11g027450 Solanum pennellii HOM05D004190 ORTHO05D004692 9.9e-12 74.7 170 37.6
ECA240G3776 Erigeron canadensis HOM05D004190 ORTHO05D000203 2.9e-11 73.2 129 39.5
Cfa011508 Carpinus fangiana HOM05D004190 ORTHO05D004692 6.4e-11 72.0 95 43.2
Lsat_1_v5_gn_3_111560 Lactuca sativa HOM05D004190 ORTHO05D004692 6.4e-11 72.0 81 56.8
CiPaw.04G135700 Carya illinoinensis HOM05D004190 ORTHO05D004692 8.4e-11 71.6 64 56.2
Ah.15g097420 Amaranthus hybridus HOM05D004190 ORTHO05D004692 3.2e-10 69.7 79 48.1
TWI31G1174 Tripterygium wilfordii HOM05D004190 ORTHO05D004692 3.2e-10 69.7 85 44.7
EL10Ac7g16022 Beta vulgaris HOM05D004190 ORTHO05D004692 4.2e-10 69.3 75 46.7
COL.COLO4_18512 Corchorus olitorius HOM05D004190 ORTHO05D004692 5.4e-10 68.9 94 41.5
Duzib170G0106 Durio zibethinus HOM05D004190 ORTHO05D004692 5.4e-10 68.9 106 41.5
HanXRQChr13g0419771 Helianthus annuus HOM05D004190 ORTHO05D004692 5.4e-10 68.9 85 45.9
CAN.G745.23 Capsicum annuum HOM05D004190 ORTHO05D004692 7.1e-10 68.6 175 35.4
ClCG03G001470 Citrullus lanatus HOM05D004190 ORTHO05D004692 7.1e-10 68.6 201 30.3
Sc21g0005810 Simmondsia chinensis HOM05D004190 ORTHO05D004692 7.1e-10 68.6 161 34.2
Prupe.6G076700 Prunus persica HOM05D004190 ORTHO05D004692 1.2e-09 67.8 72 44.4
CAN.G1733.5 Capsicum annuum HOM05D004190 ORTHO05D004692 1.6e-09 67.4 81 49.4
Sc24g0002450 Simmondsia chinensis HOM05D004190 ORTHO05D004692 1.6e-09 67.4 135 37.8
Dinv08914 Davidia involucrata HOM05D004190 ORTHO05D004692 2.1e-09 67.0 61 57.4
Sed0024869 Sechium edule HOM05D004190 ORTHO05D004692 2.1e-09 67.0 76 43.4
Eucgr.J02050 Eucalyptus grandis HOM05D004190 ORTHO05D004692 2.7e-09 66.6 201 32.3
Potri.009G031100 Populus trichocarpa HOM05D004190 ORTHO05D004692 2.7e-09 66.6 85 41.2
CANSAT54G1895 Cannabis sativa HOM05D004190 ORTHO05D004692 3.5e-09 66.2 70 47.1
Ciclev10029152m.g Citrus clementina HOM05D004190 ORTHO05D004692 3.5e-09 66.2 75 45.3
Gohir.A13G227300 Gossypium hirsutum HOM05D004190 ORTHO05D004692 3.5e-09 66.2 172 30.8
Hund04953 Selenicereus undatus HOM05D004190 ORTHO05D004692 3.5e-09 66.2 67 47.8
SEGI_04263 Sequoiadendron giganteum HOM05D016141 ORTHO05D004692 3.5e-09 66.2 103 36.9
CsaV3_1G034280 Cucumis sativus L. HOM05D004190 ORTHO05D004692 4.6e-09 65.9 172 31.4
CiPaw.13G093900 Carya illinoinensis HOM05D004190 ORTHO05D004692 6.0e-09 65.5 64 51.6
CDE08G1317 Ceratophyllum demersum HOM05D004190 ORTHO05D004692 7.9e-09 65.1 73 47.9
PSO339G5001 Papaver somniferum HOM05D066734 ORTHO05D004692 7.9e-09 65.1 87 44.8
CDE02G2475 Ceratophyllum demersum HOM05D004190 ORTHO05D004692 1.0e-08 64.7 147 32.7
Ah.08g219540 Amaranthus hybridus HOM05D004190 ORTHO05D004692 1.3e-08 64.3 170 31.2
AL5G25450 Arabidopsis lyrata HOM05D004190 ORTHO05D004692 1.3e-08 64.3 62 50.0
Gohir.D13G232900 Gossypium hirsutum HOM05D004190 ORTHO05D004692 1.3e-08 64.3 172 30.8
Gorai.013G263700 Gossypium raimondii HOM05D004190 ORTHO05D004692 1.3e-08 64.3 172 30.8
Potri.001G240100 Populus trichocarpa HOM05D004190 ORTHO05D004692 1.3e-08 64.3 85 43.5
Carub.0005s1285 Capsella rubella HOM05D004190 ORTHO05D004692 1.8e-08 63.9 82 42.7
Oeu002349.1 Olea europaea HOM05D004190 ORTHO05D004692 1.8e-08 63.9 130 33.8
Hund18906 Selenicereus undatus HOM05D004190 ORTHO05D004692 1.8e-08 63.9 161 33.5
PGSC0003DMG400024773 Solanum tuberosum HOM05D004190 ORTHO05D004692 1.8e-08 63.9 81 44.4
Atru.chr3.3912 Acer truncatum HOM05D004190 ORTHO05D004692 2.3e-08 63.5 185 30.3
AT3G46580 Arabidopsis thaliana HOM05D004190 ORTHO05D004692 2.3e-08 63.5 88 42.0
MD11G1107500 Malus domestica HOM05D004190 ORTHO05D004692 3.0e-08 63.2 102 38.2
RcHm_v2.0_Chr5g0064931 Rosa chinensis HOM05D004190 ORTHO05D004692 3.0e-08 63.2 109 36.7
FvH4_3g36180 Fragaria vesca HOM05D004190 ORTHO05D004692 3.9e-08 62.8 73 43.8
FAN11G2049 Fragaria x ananassa HOM05D004190 ORTHO05D004692 3.9e-08 62.8 73 43.8
Gohir.D05G095900 Gossypium hirsutum HOM05D004190 ORTHO05D004692 3.9e-08 62.8 100 38.0
Gorai.009G099200 Gossypium raimondii HOM05D004190 ORTHO05D004692 3.9e-08 62.8 100 38.0
Sopen00g012630 Solanum pennellii HOM05D004190 ORTHO05D004692 3.9e-08 62.8 106 38.7
Sopen01g043570 Solanum pennellii HOM05D004190 ORTHO05D004692 3.9e-08 62.8 106 38.7
PSO339G5527 Papaver somniferum HOM05D066660 ORTHO05D004692 5.1e-08 62.4 89 37.1
THA.LOC104810778 Tarenaya hassleriana HOM05D004190 ORTHO05D004692 5.1e-08 62.4 83 42.2
Thecc.09G321100 Theobroma cacao HOM05D004190 ORTHO05D004692 5.1e-08 62.4 97 41.2
FAN16G2398 Fragaria x ananassa HOM05D004190 ORTHO05D004692 6.7e-08 62.0 73 43.8
FAN21G2646 Fragaria x ananassa HOM05D004190 ORTHO05D004692 6.7e-08 62.0 73 43.8
FAN25G3130 Fragaria x ananassa HOM05D004190 ORTHO05D004692 6.7e-08 62.0 73 43.8
Gohir.A05G095600 Gossypium hirsutum HOM05D004190 ORTHO05D004692 6.7e-08 62.0 98 39.8
Manes.01G173632 Manihot esculenta HOM05D004190 ORTHO05D004692 6.7e-08 62.0 95 42.1
PSO384G2347 Papaver somniferum HOM05D066734 ORTHO05D004692 6.7e-08 62.0 76 46.1
CAN.G745.26 Capsicum annuum HOM05D004190 ORTHO05D004692 8.7e-08 61.6 183 31.1
PSO384G5141 Papaver somniferum HOM05D066660 ORTHO05D004692 8.7e-08 61.6 110 32.7
C02p12490 Brassica napus HOM05D000173 ORTHO05D000316 1.1e-07 61.2 109 37.6
SEGI_09707 Sequoiadendron giganteum HOM05D004190 ORTHO05D004692 1.5e-07 60.8 95 41.1
Cpa.g.sc81.141 Carica papaya HOM05D004190 ORTHO05D004692 1.9e-07 60.5 191 31.4
Thhalv10002683m.g Eutrema salsugineum HOM05D004190 ORTHO05D004692 1.9e-07 60.5 91 40.7
Aa31LG4G15580 Aethionema arabicum HOM05D004190 ORTHO05D004692 2.5e-07 60.1 72 43.1
BraA02t05794Z Brassica rapa HOM05D004190 ORTHO05D004692 2.5e-07 60.1 65 47.7
PGR119G1862 Punica granatum HOM05D004190 ORTHO05D004692 2.5e-07 60.1 189 30.7
PGSC0003DMG400006228 Solanum tuberosum HOM05D004190 ORTHO05D004692 2.5e-07 60.1 65 49.2
TWI31G0561 Tripterygium wilfordii HOM05D004190 ORTHO05D004692 2.5e-07 60.1 90 40.0
BraA10t43742Z Brassica rapa HOM05D000173 ORTHO05D000316 3.3e-07 59.7 67 44.8
CAN.G1733.1 Capsicum annuum HOM05D004190 ORTHO05D004692 3.3e-07 59.7 199 31.2
Nn2g13344 Nelumbo nucifera HOM05D004190 ORTHO05D004692 3.3e-07 59.7 165 30.3
MD03G1092700 Malus domestica HOM05D004190 ORTHO05D004692 5.6e-07 58.9 108 36.1
GSVIVG01024954001 Vitis vinifera HOM05D004190 ORTHO05D004692 5.6e-07 58.9 65 49.2
BcaB05g22507 Brassica carinata HOM05D004190 ORTHO05D004692 7.4e-07 58.5 85 40.0
CARHR285750 Cardamine hirsuta HOM05D004190 ORTHO05D004692 7.4e-07 58.5 87 40.2
BcaC03g14013 Brassica carinata HOM05D004190 ORTHO05D004692 9.6e-07 58.2 154 31.2
BcaC04g19780 Brassica carinata HOM05D004190 ORTHO05D004692 9.6e-07 58.2 67 43.3
C09p51780 Brassica napus HOM05D000173 ORTHO05D004692 9.6e-07 58.2 67 43.3
BolC2t07349H Brassica oleracea HOM05D004190 ORTHO05D004692 9.6e-07 58.2 154 31.2
BolC9t58040H Brassica oleracea HOM05D000173 ORTHO05D004692 9.6e-07 58.2 67 43.3
Duzib150G1353 Durio zibethinus HOM05D004190 ORTHO05D004692 9.6e-07 58.2 169 29.0
THA.LOC104814877 Tarenaya hassleriana HOM05D004190 ORTHO05D004692 9.6e-07 58.2 95 37.9
Aqoxy4G02933 Aquilegia oxysepala HOM05D004190 ORTHO05D004692 1.3e-06 57.8 71 46.5
BcaC01g06528 Brassica carinata HOM05D004190 ORTHO05D004692 1.3e-06 57.8 75 40.0
C03p13790 Brassica napus HOM05D004190 ORTHO05D004692 1.3e-06 57.8 75 40.0
BcaB08g36263 Brassica carinata HOM05D004190 ORTHO05D004692 1.6e-06 57.4 62 45.2
Sp6g21060 Schrenkiella parvula HOM05D004190 ORTHO05D004692 1.6e-06 57.4 62 45.2
Sp5g15120 Schrenkiella parvula HOM05D004190 ORTHO05D004692 2.1e-06 57.0 80 40.0
Carub.0008s2005 Capsella rubella HOM05D004190 ORTHO05D004692 2.8e-06 56.6 72 38.9
MBI18_g01149_MAGBIO Magnolia biondii HOM05D003520 ORTHO05D003332 2.8e-06 56.6 68 45.6
ATR0559G266 Amborella trichopoda HOM05D004190 ORTHO05D004692 3.6e-06 56.2 68 42.6
BcaB01g04590 Brassica carinata HOM05D004190 ORTHO05D004692 3.6e-06 56.2 89 38.2
BolC3t13827H Brassica oleracea HOM05D004190 ORTHO05D004692 3.6e-06 56.2 75 38.7
TAR623G1294 Trochodendron aralioides HOM05D004190 ORTHO05D004692 3.6e-06 56.2 130 32.3
AL8G35820 Arabidopsis lyrata HOM05D004190 ORTHO05D004692 4.8e-06 55.8 82 35.4
AT5G59380 Arabidopsis thaliana HOM05D004190 ORTHO05D004692 4.8e-06 55.8 72 37.5
BcaB01g04586 Brassica carinata HOM05D004190 ORTHO05D004692 4.8e-06 55.8 72 37.5
BraA03t10485Z Brassica rapa HOM05D004190 ORTHO05D004692 4.8e-06 55.8 72 37.5
Solyc10g049990.1 Solanum lycopersicum HOM05D004190 ORTHO05D018124 4.8e-06 55.8 66 45.5
Thhalv10014530m.g Eutrema salsugineum HOM05D004190 ORTHO05D004692 6.2e-06 55.5 98 35.7
Gorai.001G110900 Gossypium raimondii HOM05D004190 ORTHO05D004692 6.2e-06 55.5 64 42.2
Sabra09G0021900 Salix brachista HOM05D004190 ORTHO05D004692 6.2e-06 55.5 155 28.4
PGSC0003DMG400042312 Solanum tuberosum HOM05D004190 ORTHO05D018124 6.2e-06 55.5 64 45.3
TWI79G1380 Tripterygium wilfordii HOM05D004190 ORTHO05D004692 6.2e-06 55.5 62 46.8
AUR62001782 Chenopodium quinoa HOM05D004190 ORTHO05D004692 8.1e-06 55.1 67 44.8
Mapoly0026s0046 Marchantia polymorpha HOM05D004190 ORTHO05D004692 8.1e-06 55.1 93 30.1


User provided reference genes

Program Settings