Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold292G47401 Striga asiatica HOM05D005691 ORTHO05D007096 0.0e+00 2510.7 1262 100.0
SGA_v2.0_scaffold292G47412 Striga asiatica HOM05D005691 ORTHO05D007096 0.0e+00 2014.2 1278 82.7
SGA_v2.0_scaffold73G24511 Striga asiatica HOM05D005691 ORTHO05D007096 0.0e+00 2011.1 1225 85.3
Migut.M00032 Erythranthe guttata HOM05D005691 ORTHO05D007096 0.0e+00 1688.7 1306 67.4
MSTRG.6644 Avicennia marina HOM05D005691 ORTHO05D007096 0.0e+00 1632.1 1321 65.1
SalBow7G1588 Salvia bowleyana HOM05D005691 ORTHO05D007096 0.0e+00 1484.5 1302 62.5
Oeu029977.1 Olea europaea HOM05D005691 ORTHO05D007096 0.0e+00 1470.7 1293 61.5
CSS0040753 Camellia sinensis var. sinensis HOM05D005691 ORTHO05D007096 0.0e+00 1427.9 1325 57.1
Cc00_g04460 Coffea canephora HOM05D005691 ORTHO05D007096 0.0e+00 1398.3 1328 56.7
Peaxi162Scf00776g00233 Petunia axillaris HOM05D005691 ORTHO05D007096 0.0e+00 1383.2 1329 57.0
Nitab4.5_0009877g0010 Nicotiana tabacum HOM05D005691 ORTHO05D007096 0.0e+00 1381.7 1322 56.9
CSS0009966 Camellia sinensis var. sinensis HOM05D005691 ORTHO05D007096 0.0e+00 1379.4 1265 57.4
PGSC0003DMG400006150 Solanum tuberosum HOM05D005691 ORTHO05D007096 0.0e+00 1371.7 1324 56.4
Actinidia21444 Actinidia chinensis HOM05D005691 ORTHO05D007096 0.0e+00 1370.9 1323 56.2
Lj8A134T75 Lonicera japonica HOM05D005691 ORTHO05D007096 0.0e+00 1368.6 1322 55.6
Nitab4.5_0000441g0080 Nicotiana tabacum HOM05D005691 ORTHO05D007096 0.0e+00 1364.4 1322 56.4
Sopen07g024300 Solanum pennellii HOM05D005691 ORTHO05D007096 0.0e+00 1348.6 1324 55.7
QL08p028494 Quercus lobata HOM05D005691 ORTHO05D007096 0.0e+00 1342.4 1326 55.0
CAN.G854.9 Capsicum annuum HOM05D005691 ORTHO05D007096 0.0e+00 1341.3 1328 55.3
Haze_12684 Corylus avellana HOM05D005691 ORTHO05D007096 0.0e+00 1340.1 1318 54.8
Gohir.A07G191000 Gossypium hirsutum HOM05D005691 ORTHO05D007096 0.0e+00 1334.3 1319 54.1
Thecc.01G191500 Theobroma cacao HOM05D005691 ORTHO05D007096 0.0e+00 1333.5 1327 54.5
Prupe.3G200800 Prunus persica HOM05D005691 ORTHO05D007096 0.0e+00 1328.9 1323 55.4
vmacro09398 Vaccinium macrocarpon HOM05D005691 ORTHO05D007096 0.0e+00 1328.9 1393 53.3
Manes.12G061100 Manihot esculenta HOM05D005691 ORTHO05D007096 0.0e+00 1322.8 1324 53.8
Atru.chr6.3368 Acer truncatum HOM05D005691 ORTHO05D007096 0.0e+00 1320.4 1321 54.7
Hma1.2p1_0133F.1_g061380 Hydrangea macrophylla HOM05D005691 ORTHO05D007096 0.0e+00 1312.4 1257 55.1
CANSAT64G0049 Cannabis sativa HOM05D005691 ORTHO05D007096 0.0e+00 1299.6 1315 53.7
ECA240G2675 Erigeron canadensis HOM05D005691 ORTHO05D007096 0.0e+00 1298.1 1302 54.4
Potri.002G221300 Populus trichocarpa HOM05D005691 ORTHO05D007096 0.0e+00 1294.6 1280 53.8
Rhsim04G0038700 Rhododendron simsii HOM05D005691 ORTHO05D007096 0.0e+00 1293.5 1468 50.4
RcHm_v2.0_Chr2g0156551 Rosa chinensis HOM05D005691 ORTHO05D007096 0.0e+00 1292.3 1322 53.6
CiPaw.03G279200 Carya illinoinensis HOM05D005691 ORTHO05D007096 0.0e+00 1291.9 1322 53.0
GSVIVG01030051001 Vitis vinifera HOM05D005691 ORTHO05D007096 0.0e+00 1286.2 1304 53.8
Nn1g07449 Nelumbo nucifera HOM05D005691 ORTHO05D007096 0.0e+00 1285.8 1327 53.2
HanXRQChr03g0075241 Helianthus annuus HOM05D005691 ORTHO05D007096 0.0e+00 1285.0 1290 53.5
Ciclev10014054m.g Citrus clementina HOM05D005691 ORTHO05D007096 0.0e+00 1277.7 1317 52.7
DCAR_019708 Daucus carota HOM05D005691 ORTHO05D007096 0.0e+00 1276.5 1262 54.0
AUR62015058 Chenopodium quinoa HOM05D005691 ORTHO05D007096 0.0e+00 1273.5 1319 52.1
FvH4_6g40930 Fragaria vesca HOM05D005691 ORTHO05D007096 0.0e+00 1271.9 1322 53.0
FAN09G3499 Fragaria x ananassa HOM05D005691 ORTHO05D007096 0.0e+00 1269.6 1321 52.5
FAN14G0170 Fragaria x ananassa HOM05D005691 ORTHO05D007096 0.0e+00 1269.2 1322 52.9
FAN05G1189 Fragaria x ananassa HOM05D005691 ORTHO05D007096 0.0e+00 1265.4 1320 52.5
MD17G1113600 Malus domestica HOM05D005691 ORTHO05D007096 0.0e+00 1264.2 1320 53.0
TWI18G1215 Tripterygium wilfordii HOM05D005691 ORTHO05D007096 0.0e+00 1263.8 1317 52.7
arahy.Tifrunner.gnm1.ann1.2CK2M8 Arachis hypogaea HOM05D005691 ORTHO05D007096 0.0e+00 1262.7 1315 51.6
Sc21g0000790 Simmondsia chinensis HOM05D005691 ORTHO05D007096 0.0e+00 1261.9 1322 52.0
Eucgr.A01048 Eucalyptus grandis HOM05D005691 ORTHO05D007096 0.0e+00 1258.4 1322 51.7
MBI16_g26390_MAGBIO Magnolia biondii HOM05D005691 ORTHO05D007096 0.0e+00 1258.4 1327 51.2
Sabra02G0169100 Salix brachista HOM05D005691 ORTHO05D007096 0.0e+00 1257.7 1359 51.4
AUR62017514 Chenopodium quinoa HOM05D005691 ORTHO05D007096 0.0e+00 1256.9 1319 51.6
arahy.Tifrunner.gnm1.ann1.5BD1HA Arachis hypogaea HOM05D005691 ORTHO05D007096 0.0e+00 1250.3 1313 51.3
EL10Ac9g22718 Beta vulgaris HOM05D005691 ORTHO05D007096 0.0e+00 1247.6 1327 50.8
LjContig00081g0016683 Lotus japonicus HOM05D005691 ORTHO05D007096 0.0e+00 1246.1 1314 50.9
Gohir.D07G197400 Gossypium hirsutum HOM05D005691 ORTHO05D007096 0.0e+00 1244.6 1202 54.8
Psat2g005000 Pisum sativum HOM05D005691 ORTHO05D007096 0.0e+00 1244.6 1318 51.1
PSO675G5893 Papaver somniferum HOM05D005691 ORTHO05D007096 0.0e+00 1240.7 1330 52.0
Gorai.001G221100 Gossypium raimondii HOM05D005691 ORTHO05D007096 0.0e+00 1239.6 1200 54.8
VMungo0647G0393 Vigna mungo HOM05D005691 ORTHO05D007096 0.0e+00 1239.6 1311 51.2
PGR042G3586 Punica granatum HOM05D005691 ORTHO05D007096 0.0e+00 1238.8 1322 51.8
TPR.G1235 Trifolium pratense HOM05D005691 ORTHO05D007096 0.0e+00 1234.9 1320 51.4
Ca_06452_v3 Cicer arietinum L. HOM05D005691 ORTHO05D007096 0.0e+00 1234.6 1316 50.8
FAN02G1659 Fragaria x ananassa HOM05D005691 ORTHO05D007096 0.0e+00 1233.4 1337 51.2
Glyma.14G008200 Glycine max HOM05D005691 ORTHO05D007096 0.0e+00 1233.0 1318 51.1
Glyma.02G305200 Glycine max HOM05D005691 ORTHO05D007096 0.0e+00 1231.5 1317 50.8
Phvul.008G284900 Phaseolus vulgaris HOM05D005691 ORTHO05D007096 0.0e+00 1231.5 1318 50.2
Hund01594 Selenicereus undatus HOM05D005691 ORTHO05D007096 0.0e+00 1230.7 1320 50.8
Medtr5g097260 Medicago truncatula HOM05D005691 ORTHO05D007096 0.0e+00 1230.3 1316 51.0
Lalb_Chr10g0107611 Lupinus albus HOM05D005691 ORTHO05D007096 0.0e+00 1215.7 1322 50.5
Dinv07866 Davidia involucrata HOM05D005691 ORTHO05D007096 0.0e+00 1208.4 1324 51.1
Lsat_1_v5_gn_9_104801 Lactuca sativa HOM05D005691 ORTHO05D007096 0.0e+00 1205.7 1302 51.5
Sed0003649 Sechium edule HOM05D005691 ORTHO05D007096 0.0e+00 1197.6 1320 50.7
MELO3C024202.2 Cucumis melo HOM05D005691 ORTHO05D007096 0.0e+00 1196.8 1320 50.5
THA.LOC104815358 Tarenaya hassleriana HOM05D005691 ORTHO05D007096 0.0e+00 1193.7 1328 49.2
CsaV3_7G002600 Cucumis sativus L. HOM05D005691 ORTHO05D007096 0.0e+00 1192.9 1323 50.3
ClCG02G002780 Citrullus lanatus HOM05D005691 ORTHO05D007096 0.0e+00 1191.8 1322 50.5
Aqoxy4G02218 Aquilegia oxysepala HOM05D005691 ORTHO05D007096 0.0e+00 1189.5 1331 50.2
Thhalv10003521m.g Eutrema salsugineum HOM05D005691 ORTHO05D007096 0.0e+00 1162.9 1319 48.8
AL3G42730 Arabidopsis lyrata HOM05D005691 ORTHO05D007096 0.0e+00 1158.7 1316 49.1
Carub.0003s2665 Capsella rubella HOM05D005691 ORTHO05D007096 0.0e+00 1154.8 1321 49.2
BcaB06g26838 Brassica carinata HOM05D005691 ORTHO05D007096 0.0e+00 1146.3 1310 48.2
C03p55370 Brassica napus HOM05D005691 ORTHO05D007096 0.0e+00 1139.4 1312 48.6
BraA03t13590Z Brassica rapa HOM05D005691 ORTHO05D007096 0.0e+00 1134.4 1312 48.9
BcaC01g03178 Brassica carinata HOM05D005691 ORTHO05D007096 0.0e+00 1134.0 1312 48.2
BolC3t17809H Brassica oleracea HOM05D005691 ORTHO05D007096 0.0e+00 1134.0 1312 48.2
Sp3g23610 Schrenkiella parvula HOM05D005691 ORTHO05D007096 0.0e+00 1132.1 1316 47.4
A03p44570 Brassica napus HOM05D005691 ORTHO05D007096 0.0e+00 1130.9 1312 48.6
BcaB08g34496 Brassica carinata HOM05D005691 ORTHO05D007096 0.0e+00 1130.5 1313 48.5
ATR1149G135 Amborella trichopoda HOM05D005691 ORTHO05D007096 0.0e+00 1105.5 1326 46.7
Zm00001eb399630 Zea mays HOM05D005691 ORTHO05D007096 6.3e-305 1051.2 1307 46.0
CARHR103010 Cardamine hirsuta HOM05D005691 ORTHO05D007096 2.0e-303 1046.2 1078 52.2
Os03g0225500 Oryza sativa ssp. japonica HOM05D005691 ORTHO05D007096 2.7e-300 1035.8 1303 45.3
TAR626G1898 Trochodendron aralioides HOM05D005691 ORTHO05D007096 2.3e-286 989.6 990 54.0
AT2G05120 Arabidopsis thaliana HOM05D005691 ORTHO05D007096 6.0e-279 964.9 971 53.6
SEGI_38606 Sequoiadendron giganteum HOM05D005691 ORTHO05D007096 3.0e-278 962.6 1322 41.8
Hma1.2p1_0133F.1_g061370 Hydrangea macrophylla HOM05D005691 ORTHO05D007096 2.3e-275 953.0 917 55.0
Solyc07g047860.4 Solanum lycopersicum HOM05D005691 ORTHO05D007096 3.6e-268 929.1 846 58.9
SHI10144 Sapria himalayana HOM05D005691 ORTHO05D007096 5.6e-253 878.6 1223 42.5
unitig_746.g26642 Utricularia gibba HOM05D005691 ORTHO05D007096 7.9e-247 858.2 1291 41.7
Mapoly0061s0124 Marchantia polymorpha HOM05D005691 ORTHO05D007096 3.3e-229 799.7 1312 38.9
BcaC06g35896 Brassica carinata HOM05D005691 ORTHO05D007096 5.7e-229 798.9 1274 39.9
SMO351G0158 Selaginella moellendorffii HOM05D005691 ORTHO05D007096 5.5e-208 729.2 1267 37.3
AagrBONN_evm.TU.Sc2ySwM_362.2878 Anthoceros agrestis HOM05D005691 ORTHO05D007096 2.0e-194 684.1 1062 40.3
Pp3c21_14430 Physcomitrium patens HOM05D005691 ORTHO05D007096 2.7e-191 673.7 1309 34.5
CDE04G3337 Ceratophyllum demersum HOM05D005691 ORTHO05D007096 3.2e-184 650.2 946 41.9
COL.COLO4_09229 Corchorus olitorius HOM05D005691 ORTHO05D007096 4.8e-135 486.9 473 53.9
HPP92_000880 Vanilla planifolia HOM05D005691 ORTHO05D007096 7.6e-125 453.0 592 44.9
COL.COLO4_09230 Corchorus olitorius HOM05D005691 ORTHO05D007096 1.6e-114 418.7 553 46.1
CBR_g39814 Chara braunii HOM05D005691 ORTHO05D007096 2.5e-107 394.8 1164 28.3
Cpa.g.sc211.12 Carica papaya HOM05D005691 ORTHO05D007096 1.1e-83 316.2 286 55.9
CDE04G1592 Ceratophyllum demersum HOM05D005691 ORTHO05D007096 7.5e-80 303.5 324 49.4
HPP92_000881 Vanilla planifolia HOM05D005691 ORTHO05D007096 5.0e-76 290.8 336 47.0
SMO351G0109 Selaginella moellendorffii HOM05D005691 ORTHO05D007096 6.1e-74 283.9 1053 27.0
Cpa.g.sc211.9 Carica papaya HOM05D005691 ORTHO05D007096 1.4e-73 282.7 305 50.2
C07p09910 Brassica napus HOM05D005691 ORTHO05D007096 4.3e-59 234.6 260 52.3
C07p09950 Brassica napus HOM05D005691 ORTHO05D007096 1.8e-49 202.6 309 39.2
Hma1.2p1_1825F.1_g304370 Hydrangea macrophylla HOM05D005691 ORTHO05D007096 2.2e-47 195.7 184 51.6
TAR626G0169 Trochodendron aralioides HOM05D005691 ORTHO05D007096 1.5e-43 183.0 218 46.8
Hma1.2p1_0133F.1_g061390 Hydrangea macrophylla HOM05D005691 ORTHO05D007096 1.4e-41 176.4 169 49.7
BolC7t41441H Brassica oleracea HOM05D005691 ORTHO05D007096 1.8e-41 176.0 290 37.2
Hma1.2p1_1825F.1_g304360 Hydrangea macrophylla HOM05D005691 ORTHO05D007096 5.2e-41 174.5 157 59.2
C07p09940 Brassica napus HOM05D005691 ORTHO05D007096 4.9e-31 141.4 119 59.7
MCO12G144 Micromonas commoda HOM05D005691 ORTHO05D007096 2.7e-29 135.6 670 25.1
PGR042G0477 Punica granatum HOM05D005691 ORTHO05D007096 1.1e-27 130.2 128 56.2
PGR042G0061 Punica granatum HOM05D005691 ORTHO05D007096 5.3e-17 94.7 124 43.5
SalBow7G3724 Salvia bowleyana HOM05D005691 ORTHO05D007096 6.0e-13 81.3 101 47.5
BolC7t41437H Brassica oleracea HOM05D005691 ORTHO05D027513 1.3e-07 63.5 121 32.2
SHI10145 Sapria himalayana HOM05D005691 ORTHO05D007096 1.3e-07 63.5 92 44.6
Hma1.2p1_0133F.1_g061360 Hydrangea macrophylla HOM05D005691 ORTHO05D007096 4.2e-06 58.5 65 52.3


User provided reference genes

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