Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold291G47345 Striga asiatica HOM05D000283 ORTHO05D005391 0.0e+00 2148.6 1221 100.0
Migut.F01533 Erythranthe guttata HOM05D000283 ORTHO05D005391 0.0e+00 1132.1 1170 59.7
SalBow6G0521 Salvia bowleyana HOM05D000283 ORTHO05D005391 2.4e-285 986.1 1047 54.8
Oeu050639.2 Olea europaea HOM05D000283 ORTHO05D005391 2.3e-275 953.0 996 60.1
Cc02_g08650 Coffea canephora HOM05D000283 ORTHO05D005391 3.3e-274 949.1 1031 55.3
CSS0009141 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D005391 1.1e-272 944.1 1030 56.1
Thecc.10G063000 Theobroma cacao HOM05D000283 ORTHO05D005391 1.7e-267 926.8 1031 52.0
Atru.chr12.592 Acer truncatum HOM05D000283 ORTHO05D005391 2.9e-262 909.4 1033 52.4
Cfa001559 Carpinus fangiana HOM05D000283 ORTHO05D005391 2.7e-260 902.9 1056 55.3
Haze_16972 Corylus avellana HOM05D000283 ORTHO05D005391 5.1e-259 898.7 1056 55.7
Cpa.g.sc1.303 Carica papaya HOM05D000283 ORTHO05D005391 2.4e-256 889.8 1033 52.4
GSVIVG01032627001 Vitis vinifera HOM05D000283 ORTHO05D005391 3.1e-256 889.4 985 53.2
Hma1.2p1_0207F.1_g087980 Hydrangea macrophylla HOM05D000283 ORTHO05D005391 1.5e-255 887.1 1123 48.8
Duzib106G1632 Durio zibethinus HOM05D000283 ORTHO05D005391 2.0e-255 886.7 1035 50.3
Sopen05g033370 Solanum pennellii HOM05D000283 ORTHO05D005391 2.4e-253 879.8 1025 51.8
Nn2g10554 Nelumbo nucifera HOM05D000283 ORTHO05D005391 3.5e-252 875.9 1042 51.5
QL08p057534 Quercus lobata HOM05D000283 ORTHO05D005391 2.3e-251 873.2 1105 53.6
Lj8C92G16 Lonicera japonica HOM05D000283 ORTHO05D005391 5.1e-251 872.1 1062 50.4
Gohir.D10G217200 Gossypium hirsutum HOM05D000283 ORTHO05D005391 2.5e-250 869.8 1038 50.9
Gorai.011G242800 Gossypium raimondii HOM05D000283 ORTHO05D005391 1.6e-249 867.1 1038 50.7
Nitab4.5_0000914g0100 Nicotiana tabacum HOM05D000283 ORTHO05D005391 1.4e-248 864.0 1089 49.3
Nitab4.5_0010706g0030 Nicotiana tabacum HOM05D000283 ORTHO05D005391 1.4e-248 864.0 1064 50.1
COL.COLO4_05804 Corchorus olitorius HOM05D000283 ORTHO05D005391 4.0e-248 862.4 1073 50.2
Duzib128G1699 Durio zibethinus HOM05D000283 ORTHO05D005391 5.3e-248 862.1 1040 49.8
Gohir.A10G208900 Gossypium hirsutum HOM05D000283 ORTHO05D005391 1.5e-247 860.5 1038 50.6
CiPaw.02G178600 Carya illinoinensis HOM05D000283 ORTHO05D005391 2.0e-247 860.1 1055 54.4
Peaxi162Scf00015g02711 Petunia axillaris HOM05D000283 ORTHO05D005391 2.6e-247 859.8 1023 53.0
unitig_749.g14014 Utricularia gibba HOM05D000283 ORTHO05D005391 3.4e-247 859.4 983 51.8
Ciclev10030610m.g Citrus clementina HOM05D000283 ORTHO05D005391 3.2e-245 852.8 1026 51.6
TWI38G2098 Tripterygium wilfordii HOM05D000283 ORTHO05D005391 2.3e-243 846.7 1093 48.3
TWI15G0630 Tripterygium wilfordii HOM05D000283 ORTHO05D005391 3.0e-243 846.3 1072 48.4
Solyc05g054910.3 Solanum lycopersicum HOM05D000283 ORTHO05D005391 3.9e-243 845.9 1019 50.6
Potri.008G047700 Populus trichocarpa HOM05D000283 ORTHO05D005391 6.7e-243 845.1 1025 53.6
TAR633G1628 Trochodendron aralioides HOM05D000283 ORTHO05D005391 1.1e-242 844.3 998 50.7
MELO3C023808.2 Cucumis melo HOM05D000283 ORTHO05D005391 4.3e-242 842.4 1013 50.0
CANSAT56G0145 Cannabis sativa HOM05D000283 ORTHO05D005391 5.6e-242 842.0 1041 51.4
CsaV3_5G006520 Cucumis sativus L. HOM05D000283 ORTHO05D005391 7.4e-242 841.6 1033 48.9
Manes.07G106300 Manihot esculenta HOM05D000283 ORTHO05D005391 4.0e-240 835.9 1004 53.8
TAR636G1569 Trochodendron aralioides HOM05D000283 ORTHO05D005391 2.0e-239 833.6 1023 49.4
ClCG02G013670 Citrullus lanatus HOM05D000283 ORTHO05D005391 1.9e-237 827.0 1058 48.9
Sed0010822 Sechium edule HOM05D000283 ORTHO05D005391 5.5e-237 825.5 881 53.5
VMungo0720G2546 Vigna mungo HOM05D000283 ORTHO05D005391 7.1e-237 825.1 1032 48.8
Sabra10G0165400 Salix brachista HOM05D000283 ORTHO05D005391 9.3e-237 824.7 916 54.9
Dinv31389 Davidia involucrata HOM05D000283 ORTHO05D005391 1.6e-236 823.9 923 54.7
arahy.Tifrunner.gnm1.ann1.M4B7ES Arachis hypogaea HOM05D000283 ORTHO05D005391 4.6e-236 822.4 1036 49.4
Glyma.20G242100 Glycine max HOM05D000283 ORTHO05D005391 1.0e-235 821.2 1035 48.7
arahy.Tifrunner.gnm1.ann1.79HMAA Arachis hypogaea HOM05D000283 ORTHO05D005391 6.7e-235 818.5 1036 49.2
FvH4_7g20770 Fragaria vesca HOM05D000283 ORTHO05D005391 1.1e-234 817.8 894 54.8
RcHm_v2.0_Chr1g0365011 Rosa chinensis HOM05D000283 ORTHO05D005391 1.9e-234 817.0 1032 50.3
TPR.G10417 Trifolium pratense HOM05D000283 ORTHO05D005391 4.3e-234 815.8 1029 49.3
FAN06G1635 Fragaria x ananassa HOM05D000283 ORTHO05D005391 5.7e-234 815.5 894 54.7
CAN.G1602.11 Capsicum annuum HOM05D000283 ORTHO05D005391 4.8e-233 812.4 767 58.4
Sabra08G0033800 Salix brachista HOM05D000283 ORTHO05D005391 6.2e-233 812.0 890 52.7
Glyma.10G292300 Glycine max HOM05D000283 ORTHO05D005391 1.4e-232 810.8 1039 48.6
Prupe.2G224600 Prunus persica HOM05D000283 ORTHO05D005391 3.4e-231 806.2 959 50.9
Lj5g0022773 Lotus japonicus HOM05D000283 ORTHO05D005391 1.3e-230 804.3 1014 47.3
Manes.10G039400 Manihot esculenta HOM05D000283 ORTHO05D005391 1.3e-230 804.3 1031 49.4
Sed0023338 Sechium edule HOM05D000283 ORTHO05D005391 2.9e-230 803.1 1042 47.3
ECA232G0450 Erigeron canadensis HOM05D000283 ORTHO05D005391 5.5e-229 798.9 773 56.9
MD01G1117300 Malus domestica HOM05D000283 ORTHO05D005391 2.1e-228 797.0 953 51.4
Potri.010G213700 Populus trichocarpa HOM05D000283 ORTHO05D005391 2.1e-228 797.0 766 58.6
PGR142G1216 Punica granatum HOM05D000283 ORTHO05D005391 2.1e-228 797.0 1030 48.2
MD07G1184700 Malus domestica HOM05D000283 ORTHO05D005391 3.5e-228 796.2 1070 48.0
Aqoxy5G01311 Aquilegia oxysepala HOM05D000283 ORTHO05D005391 7.9e-228 795.0 964 47.8
Medtr3g073080 Medicago truncatula HOM05D000283 ORTHO05D005391 1.3e-222 777.7 1050 47.7
THA.LOC104809997 Tarenaya hassleriana HOM05D000283 ORTHO05D005391 1.3e-222 777.7 1020 47.8
AUR62042665 Chenopodium quinoa HOM05D000283 ORTHO05D005391 5.0e-222 775.8 767 55.9
AUR62025540 Chenopodium quinoa HOM05D000283 ORTHO05D005391 2.5e-221 773.5 767 55.7
Lalb_Chr21g0307161 Lupinus albus HOM05D000283 ORTHO05D005391 1.6e-220 770.8 1034 47.2
Eucgr.G02777 Eucalyptus grandis HOM05D000283 ORTHO05D005391 2.1e-220 770.4 1045 50.1
HanXRQChr15g0496771 Helianthus annuus HOM05D000283 ORTHO05D005391 2.1e-220 770.4 897 52.3
Ah.16g107830 Amaranthus hybridus HOM05D000283 ORTHO05D005391 5.1e-219 765.8 766 53.9
THA.LOC104824248 Tarenaya hassleriana HOM05D000283 ORTHO05D005391 5.1e-219 765.8 1020 46.7
Ca_10211_v3 Cicer arietinum L. HOM05D000283 ORTHO05D005391 1.1e-218 764.6 1018 47.1
EL10Ac2g03504 Beta vulgaris HOM05D000283 ORTHO05D005391 3.3e-218 763.1 771 54.5
FAN06G4940 Fragaria x ananassa HOM05D000283 ORTHO05D005391 5.7e-218 762.3 893 53.0
MBI05_g22074_MAGBIO Magnolia biondii HOM05D000283 ORTHO05D005391 7.4e-218 761.9 1031 48.1
PSO339G6458 Papaver somniferum HOM05D000283 ORTHO05D005391 1.3e-217 761.1 1136 43.7
ATR0681G328 Amborella trichopoda HOM05D000283 ORTHO05D005391 3.1e-216 756.5 1011 47.6
FAN10G3387 Fragaria x ananassa HOM05D000283 ORTHO05D005391 5.3e-216 755.7 900 50.4
Thhalv10016180m.g Eutrema salsugineum HOM05D000283 ORTHO05D005391 6.1e-212 742.3 1034 48.1
PSO384G3825 Papaver somniferum HOM05D000283 ORTHO05D005391 3.0e-211 740.0 721 56.4
Sp4g21650 Schrenkiella parvula HOM05D000283 ORTHO05D005391 3.9e-211 739.6 1044 47.6
SpUn0018_0020 Schrenkiella parvula HOM05D000283 ORTHO05D005391 3.9e-211 739.6 1044 47.6
Aa31LG5G20290 Aethionema arabicum HOM05D000283 ORTHO05D005391 3.3e-210 736.5 1084 45.2
Psat6g239040 Pisum sativum HOM05D000283 ORTHO05D005391 1.1e-208 731.5 708 56.6
Phvul.007G008100 Phaseolus vulgaris HOM05D000283 ORTHO05D005391 1.8e-208 730.7 879 50.4
CiPaw.01G279800 Carya illinoinensis HOM05D000283 ORTHO05D005391 1.2e-207 728.0 591 64.0
AT2G39340 Arabidopsis thaliana HOM05D000283 ORTHO05D005391 4.2e-205 719.5 1042 45.5
Lalb_Chr02g0143871 Lupinus albus HOM05D000283 ORTHO05D005391 2.0e-202 710.7 616 59.9
AL4G36680 Arabidopsis lyrata HOM05D000283 ORTHO05D005391 4.8e-201 706.1 1036 44.8
CARHR134130 Cardamine hirsuta HOM05D000283 ORTHO05D005391 2.6e-199 700.3 895 49.9
CDE09G1073 Ceratophyllum demersum HOM05D000283 ORTHO05D005391 4.5e-199 699.5 942 46.9
BcaC02g12050 Brassica carinata HOM05D000283 ORTHO05D005391 1.5e-197 694.5 1014 44.0
C04p08450 Brassica napus HOM05D000283 ORTHO05D005391 1.5e-197 694.5 1014 44.0
Lsat_1_v5_gn_9_66761 Lactuca sativa HOM05D000283 ORTHO05D004861 7.2e-197 692.2 1093 47.8
Carub.0004s2138 Capsella rubella HOM05D000283 ORTHO05D005391 1.2e-196 691.4 690 56.1
BolC4t22443H Brassica oleracea HOM05D000283 ORTHO05D005391 7.5e-194 682.2 891 49.2
A05p07060 Brassica napus HOM05D000283 ORTHO05D005391 1.7e-193 681.0 898 47.3
BraA05t19671Z Brassica rapa HOM05D000283 ORTHO05D005391 1.7e-193 681.0 898 47.3
BcaB02g09134 Brassica carinata HOM05D000283 ORTHO05D005391 3.7e-193 679.9 891 48.9
BraA04t18452Z Brassica rapa HOM05D000283 ORTHO05D005391 7.0e-192 675.6 1047 44.6
MSTRG.311 Avicennia marina HOM05D000283 ORTHO05D005391 9.1e-192 675.2 428 80.8
A04p30550 Brassica napus HOM05D000283 ORTHO05D005391 1.2e-191 674.9 1050 44.6
Hund22435 Selenicereus undatus HOM05D000283 ORTHO05D005391 5.2e-187 659.4 520 65.4
BcaB06g29078 Brassica carinata HOM05D000283 ORTHO05D005391 1.1e-184 651.7 781 49.9
CDE02G4519 Ceratophyllum demersum HOM05D000283 ORTHO05D005391 7.0e-184 649.0 775 50.6
BolC4t28220H Brassica oleracea HOM05D000283 ORTHO05D005391 2.3e-182 644.0 1051 42.8
BcaC02g07413 Brassica carinata HOM05D000283 ORTHO05D005391 1.2e-178 631.7 1048 41.8
C04p67220 Brassica napus HOM05D000283 ORTHO05D005391 1.2e-178 631.7 1048 41.8
HPP92_015567 Vanilla planifolia HOM05D000283 ORTHO05D005391 5.0e-174 616.3 750 48.5
Sc20g0002350 Simmondsia chinensis HOM05D000283 ORTHO05D005391 4.3e-173 613.2 833 47.2
Zm00001eb351500 Zea mays HOM05D000283 ORTHO05D005391 8.3e-169 599.0 736 49.5
Zm00001eb289820 Zea mays HOM05D000283 ORTHO05D005391 5.4e-168 596.3 761 48.0
Os05g0462600 Oryza sativa ssp. japonica HOM05D000283 ORTHO05D005391 1.7e-166 591.3 690 50.3
Mapoly0013s0152 Marchantia polymorpha HOM05D000283 ORTHO05D005391 3.7e-161 573.5 806 45.0
AagrBONN_evm.TU.Sc2ySwM_117.607 Anthoceros agrestis HOM05D000283 ORTHO05D005391 8.4e-153 545.8 635 49.1
Actinidia03006 Actinidia chinensis HOM05D000283 ORTHO05D005391 6.2e-148 529.6 363 72.2
AL5G26090 Arabidopsis lyrata HOM05D000283 ORTHO05D005391 5.8e-146 523.1 718 46.7
Actinidia38225 Actinidia chinensis HOM05D000283 ORTHO05D005391 2.9e-145 520.8 362 71.5
Os01g0836400 Oryza sativa ssp. japonica HOM05D000283 ORTHO05D005391 1.2e-143 515.4 790 43.5
Pp3c1_11990 Physcomitrium patens HOM05D000283 ORTHO05D005391 3.9e-142 510.4 655 48.2
Pp3c2_24860 Physcomitrium patens HOM05D000283 ORTHO05D005391 5.4e-136 490.0 655 45.2
DCAR_027697 Daucus carota HOM05D000283 ORTHO05D005391 3.4e-122 444.1 352 65.1
CBR_g53551 Chara braunii HOM05D000283 ORTHO05D005391 7.9e-119 433.0 724 40.3
SMO143G0323 Selaginella moellendorffii HOM05D000283 ORTHO05D005391 1.8e-118 431.8 356 62.1
SHI28193 Sapria himalayana HOM05D000283 ORTHO05D005391 1.7e-105 388.7 634 41.5
Actinidia29199 Actinidia chinensis HOM05D000283 ORTHO05D005391 1.6e-95 355.5 333 60.7
DCAR_005053 Daucus carota HOM05D000283 ORTHO05D005391 4.7e-87 327.4 466 44.0
SEGI_11420 Sequoiadendron giganteum HOM05D000283 ORTHO05D005391 2.2e-84 318.5 372 51.1
SMO141G0080 Selaginella moellendorffii HOM05D000283 ORTHO05D005391 3.2e-72 278.1 256 57.0
Dinv25941 Davidia involucrata HOM05D000283 ORTHO05D004861 4.1e-67 261.2 510 36.7
PRCOL_00005565 Prasinoderma coloniale HOM05D000283 ORTHO05D005391 1.6e-66 259.2 377 41.9
MCO13G063 Micromonas commoda HOM05D000283 ORTHO05D005391 2.4e-59 235.3 297 44.8
DCAR_005047 Daucus carota HOM05D000283 ORTHO05D005391 7.8e-58 230.3 459 36.4
Cre06.g258100 Chlamydomonas reinhardtii HOM05D000283 ORTHO05D005391 1.6e-50 206.1 621 29.5
HPP92_015519 Vanilla planifolia HOM05D000283 ORTHO05D005391 8.6e-49 200.3 157 63.1
MBI05_g32639_MAGBIO Magnolia biondii HOM05D000283 ORTHO05D005391 1.1e-48 199.9 155 63.2
Oeu058323.4 Olea europaea HOM05D000283 ORTHO05D005391 5.6e-48 197.6 376 42.8
MBI05_g30758_MAGBIO Magnolia biondii HOM05D000283 ORTHO05D005391 1.3e-44 186.4 130 66.2
SEGI_03051 Sequoiadendron giganteum HOM05D000283 ORTHO05D005391 2.2e-44 185.7 155 60.6
Gohir.D07G196232 Gossypium hirsutum HOM05D000283 ORTHO05D005391 2.4e-43 182.2 113 79.6
CSS0032527 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D005391 1.7e-41 176.0 179 52.5
TAR381G0169 Trochodendron aralioides HOM05D000283 ORTHO05D005391 5.6e-40 171.0 169 55.6
QL10p060204 Quercus lobata HOM05D000283 ORTHO05D005391 1.2e-39 169.9 144 66.0
PRCOL_00002713 Prasinoderma coloniale HOM05D000283 ORTHO05D005391 8.9e-38 163.7 276 36.2
SHI28196 Sapria himalayana HOM05D000283 ORTHO05D005391 2.3e-33 149.1 118 65.3
Actinidia29200 Actinidia chinensis HOM05D000283 ORTHO05D019495 2.1e-31 142.5 97 69.1
Hund28801 Selenicereus undatus HOM05D000283 ORTHO05D005391 1.4e-27 129.8 290 33.1
Hund28802 Selenicereus undatus HOM05D000283 ORTHO05D005391 1.4e-27 129.8 290 33.1
PGR044G1425 Punica granatum HOM05D000283 ORTHO05D005391 2.7e-26 125.6 85 74.1
Psat3g183560 Pisum sativum HOM05D000283 ORTHO05D030474 4.6e-26 124.8 85 74.1
Psat3g183640 Pisum sativum HOM05D000283 ORTHO05D030474 3.0e-25 122.1 85 72.9
CAN.G10752.1 Capsicum annuum HOM05D000283 ORTHO05D005391 8.7e-25 120.6 310 34.8
SEGI_11289 Sequoiadendron giganteum HOM05D000283 ORTHO05D005391 2.4e-22 112.5 395 35.2
HanXRQChr09g0246591 Helianthus annuus HOM05D000283 ORTHO05D005391 3.3e-16 92.0 110 49.1
Medtr1g115940 Medicago truncatula HOM05D000283 ORTHO05D019495 2.1e-15 89.4 159 34.6
CSS0012380 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D043332 2.8e-15 89.0 50 82.0
TAR381G1264 Trochodendron aralioides HOM05D000283 ORTHO05D005391 8.1e-15 87.4 291 30.2
CSS0035555 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D043332 2.4e-14 85.9 50 78.0
BraA03t11440Z Brassica rapa HOM05D000283 ORTHO05D019495 1.2e-13 83.6 84 51.2
Psat6g098640 Pisum sativum HOM05D000283 ORTHO05D005391 7.1e-11 74.3 52 63.5
Psat1g113360 Pisum sativum HOM05D000283 ORTHO05D030474 2.7e-10 72.4 47 66.0
BcaB01g03663 Brassica carinata HOM05D033592 ORTHO05D019495 3.5e-10 72.0 108 47.2
CiPaw.01G279700 Carya illinoinensis HOM05D000283 ORTHO05D005391 3.0e-09 68.9 312 33.0
PSO339G3701 Papaver somniferum HOM05D000283 ORTHO05D005391 2.5e-08 65.9 456 23.2
A03p22060 Brassica napus HOM05D000283 ORTHO05D019495 5.6e-08 64.7 59 54.2
Psat7g108960 Pisum sativum HOM05D000283 ORTHO05D030474 8.1e-07 60.8 49 59.2
SGA_v2.0_scaffold23G10231 Striga asiatica HOM05D000004 ORTHO05D406382 3.1e-06 58.9 48 66.7
SGA_v2.0_scaffold380G50364 Striga asiatica HOM05D000407 ORTHO05D000558 6.9e-06 57.8 70 51.4
TWI38G0573 Tripterygium wilfordii HOM05D002494 ORTHO05D002673 9.0e-06 57.4 275 26.5


User provided reference genes

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