Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold27G11691 Striga asiatica HOM05D002037 ORTHO05D005261 0.0e+00 3565.8 1881 100.0
SGA_v2.0_scaffold193G40648 Striga asiatica HOM05D002037 ORTHO05D005261 0.0e+00 2874.7 1850 82.4
MSTRG.25765 Avicennia marina HOM05D002037 ORTHO05D005261 0.0e+00 2560.8 1847 75.1
SalBow4G1905 Salvia bowleyana HOM05D002037 ORTHO05D005261 0.0e+00 2484.5 1856 73.8
Migut.A00462 Erythranthe guttata HOM05D002037 ORTHO05D005261 0.0e+00 2454.9 1868 71.9
Lj7A751T36 Lonicera japonica HOM05D002037 ORTHO05D005261 0.0e+00 2244.2 1856 67.7
Sopen08g023030 Solanum pennellii HOM05D002037 ORTHO05D005261 0.0e+00 2212.6 1853 65.6
CSS0033264 Camellia sinensis var. sinensis HOM05D002037 ORTHO05D005261 0.0e+00 2208.7 1858 66.3
Solyc08g074370.4 Solanum lycopersicum HOM05D002037 ORTHO05D005261 0.0e+00 2203.3 1841 65.6
CAN.G195.8 Capsicum annuum HOM05D002037 ORTHO05D005261 0.0e+00 2194.5 1846 65.0
Hund19377 Selenicereus undatus HOM05D002037 ORTHO05D005261 0.0e+00 2149.4 1850 63.5
TAR628G0359 Trochodendron aralioides HOM05D002037 ORTHO05D005261 0.0e+00 2137.5 1887 63.0
Thecc.09G001100 Theobroma cacao HOM05D002037 ORTHO05D005261 0.0e+00 2121.3 1861 63.4
Peaxi162Scf00213g01313 Petunia axillaris HOM05D002037 ORTHO05D005261 0.0e+00 2110.5 1808 64.5
Prupe.1G463700 Prunus persica HOM05D002037 ORTHO05D005261 0.0e+00 2109.3 1840 64.2
Actinidia03327 Actinidia chinensis HOM05D002037 ORTHO05D005261 0.0e+00 2100.9 1818 64.6
HanXRQChr03g0082961 Helianthus annuus HOM05D002037 ORTHO05D005261 0.0e+00 2099.7 1830 64.4
Gohir.A08G253200 Gossypium hirsutum HOM05D002037 ORTHO05D005261 0.0e+00 2098.2 1850 63.6
Ciclev10007230m.g Citrus clementina HOM05D002037 ORTHO05D005261 0.0e+00 2097.0 1839 64.2
Gorai.004G293400 Gossypium raimondii HOM05D002037 ORTHO05D005261 0.0e+00 2094.7 1850 63.4
CiPaw.08G017100 Carya illinoinensis HOM05D002037 ORTHO05D005261 0.0e+00 2090.8 1894 63.1
Cc00_g09840 Coffea canephora HOM05D002037 ORTHO05D005261 0.0e+00 2085.5 1882 62.6
Gohir.D08G274900 Gossypium hirsutum HOM05D002037 ORTHO05D005261 0.0e+00 2078.9 1841 63.3
CiPaw.07G216200 Carya illinoinensis HOM05D002037 ORTHO05D005261 0.0e+00 2069.3 1854 63.2
CsaV3_3G046860 Cucumis sativus L. HOM05D002037 ORTHO05D005261 0.0e+00 2067.4 1852 62.3
Haze_21662 Corylus avellana HOM05D002037 ORTHO05D005261 0.0e+00 2067.0 1886 62.2
TWI32G0793 Tripterygium wilfordii HOM05D002037 ORTHO05D005261 0.0e+00 2065.4 1884 62.4
TWI63G1280 Tripterygium wilfordii HOM05D002037 ORTHO05D005261 0.0e+00 2065.0 1880 62.6
COL.COLO4_18641 Corchorus olitorius HOM05D002037 ORTHO05D005261 0.0e+00 2063.1 1825 63.1
QL12p030895 Quercus lobata HOM05D002037 ORTHO05D005261 0.0e+00 2063.1 1863 62.4
Sc09g0007440 Simmondsia chinensis HOM05D002037 ORTHO05D005261 0.0e+00 2057.7 1844 62.6
Potri.006G280200 Populus trichocarpa HOM05D002037 ORTHO05D005261 0.0e+00 2057.0 1844 63.0
Manes.16G138600 Manihot esculenta HOM05D002037 ORTHO05D005261 0.0e+00 2055.0 1861 62.7
MD08G1132100 Malus domestica HOM05D002037 ORTHO05D005261 0.0e+00 2053.1 1841 63.1
arahy.Tifrunner.gnm1.ann1.8Q3S3N Arachis hypogaea HOM05D002037 ORTHO05D005261 0.0e+00 2051.2 1844 62.9
AUR62028065 Chenopodium quinoa HOM05D002037 ORTHO05D005261 0.0e+00 2050.8 1837 61.7
vmacro05091 Vaccinium macrocarpon HOM05D002037 ORTHO05D005261 0.0e+00 2050.8 1805 63.7
arahy.Tifrunner.gnm1.ann1.WQ4U6A Arachis hypogaea HOM05D002037 ORTHO05D005261 0.0e+00 2047.7 1844 62.9
RcHm_v2.0_Chr6g0312521 Rosa chinensis HOM05D002037 ORTHO05D005261 0.0e+00 2046.2 1850 62.3
EL10Ac2g03672 Beta vulgaris HOM05D002037 ORTHO05D005261 0.0e+00 2045.8 1851 61.4
MELO3C003650.2 Cucumis melo HOM05D002037 ORTHO05D005261 0.0e+00 2044.6 1884 61.3
VMungo1309G2917 Vigna mungo HOM05D002037 ORTHO05D005261 0.0e+00 2036.5 1842 62.0
Phvul.009G099700 Phaseolus vulgaris HOM05D002037 ORTHO05D005261 0.0e+00 2029.6 1848 61.5
Sed0009824 Sechium edule HOM05D002037 ORTHO05D005261 0.0e+00 2026.5 1839 61.7
ClCG05G017350 Citrullus lanatus HOM05D002037 ORTHO05D005261 0.0e+00 2025.8 1948 58.9
FvH4_2g30560 Fragaria vesca HOM05D002037 ORTHO05D005261 0.0e+00 2025.8 1837 61.7
Glyma.06G075000 Glycine max HOM05D002037 ORTHO05D005261 0.0e+00 2021.9 1840 61.9
FAN24G1054 Fragaria x ananassa HOM05D002037 ORTHO05D005261 0.0e+00 2019.2 1837 61.5
FAN27G2203 Fragaria x ananassa HOM05D002037 ORTHO05D005261 0.0e+00 2018.8 1844 61.4
Glyma.04G073900 Glycine max HOM05D002037 ORTHO05D005261 0.0e+00 2015.7 1858 61.5
AUR62020667 Chenopodium quinoa HOM05D002037 ORTHO05D005261 0.0e+00 2013.0 1836 60.9
Sabra06G0217200 Salix brachista HOM05D002037 ORTHO05D005261 0.0e+00 2011.5 1745 64.4
Cfa013233 Carpinus fangiana HOM05D002037 ORTHO05D005261 0.0e+00 2011.1 1779 63.4
Psat5g026040 Pisum sativum HOM05D002037 ORTHO05D005261 0.0e+00 2010.7 1845 61.0
DCAR_002179 Daucus carota HOM05D002037 ORTHO05D005261 0.0e+00 2006.5 1864 60.5
Aqoxy6G00128 Aquilegia oxysepala HOM05D002037 ORTHO05D005261 0.0e+00 2003.8 1875 61.0
PGR044G2064 Punica granatum HOM05D002037 ORTHO05D005261 0.0e+00 2002.3 1834 61.6
MD15G1113300 Malus domestica HOM05D002037 ORTHO05D005261 0.0e+00 1998.4 1841 61.7
Atru.chr7.2709 Acer truncatum HOM05D002037 ORTHO05D005261 0.0e+00 1983.8 1801 62.3
PGR044G2421 Punica granatum HOM05D002037 ORTHO05D005261 0.0e+00 1977.2 1832 61.1
ECA240G1370 Erigeron canadensis HOM05D002037 ORTHO05D005261 0.0e+00 1976.4 1831 61.1
GSVIVG01035587001 Vitis vinifera HOM05D002037 ORTHO05D005261 0.0e+00 1973.4 1828 61.4
Lalb_Chr11g0064041 Lupinus albus HOM05D002037 ORTHO05D005261 0.0e+00 1970.7 1854 60.2
Eucgr.C03980 Eucalyptus grandis HOM05D002037 ORTHO05D005261 0.0e+00 1966.0 1844 61.1
Medtr3g108470 Medicago truncatula HOM05D002037 ORTHO05D005261 0.0e+00 1965.3 1864 59.9
Lalb_Chr08g0243691 Lupinus albus HOM05D002037 ORTHO05D005261 0.0e+00 1964.1 1879 59.9
CANSAT25G0165 Cannabis sativa HOM05D002037 ORTHO05D005261 0.0e+00 1962.6 1850 59.9
Lsat_1_v5_gn_5_59360 Lactuca sativa HOM05D002037 ORTHO05D005261 0.0e+00 1962.2 1837 60.9
Duzib187G1591 Durio zibethinus HOM05D002037 ORTHO05D005261 0.0e+00 1950.6 1870 59.6
TPR.G12447 Trifolium pratense HOM05D002037 ORTHO05D005261 0.0e+00 1946.8 1841 59.6
Sed0015816 Sechium edule HOM05D002037 ORTHO05D005261 0.0e+00 1946.0 1876 59.0
Lj5g0025434 Lotus japonicus HOM05D002037 ORTHO05D005261 0.0e+00 1922.5 1858 59.4
DCAR_030972 Daucus carota HOM05D002037 ORTHO05D005261 0.0e+00 1909.4 1858 58.7
Cpa.g.sc148.12 Carica papaya HOM05D002037 ORTHO05D005261 0.0e+00 1906.3 1847 59.2
Lj1g0006019 Lotus japonicus HOM05D002037 ORTHO05D005261 0.0e+00 1893.6 1854 58.2
FAN20G1121 Fragaria x ananassa HOM05D002037 ORTHO05D005261 0.0e+00 1887.8 1831 58.9
Duzib168G1462 Durio zibethinus HOM05D002037 ORTHO05D005261 0.0e+00 1878.2 1673 63.3
Nn1g08375 Nelumbo nucifera HOM05D002037 ORTHO05D005261 0.0e+00 1867.0 1663 62.9
Ca_15684_v3 Cicer arietinum L. HOM05D002037 ORTHO05D005261 0.0e+00 1862.8 1832 58.2
PSO063G0181 Papaver somniferum HOM05D002037 ORTHO05D005261 0.0e+00 1857.4 1849 57.8
PSO017G1653 Papaver somniferum HOM05D002037 ORTHO05D005261 0.0e+00 1846.6 1859 57.7
ATR0584G173 Amborella trichopoda HOM05D002037 ORTHO05D005261 0.0e+00 1809.7 1858 56.0
MBI09_g40924_MAGBIO Magnolia biondii HOM05D002037 ORTHO05D005261 0.0e+00 1807.0 1902 56.9
THA.LOC104803889 Tarenaya hassleriana HOM05D002037 ORTHO05D005261 0.0e+00 1803.1 1822 57.5
CDE08G1677 Ceratophyllum demersum HOM05D002037 ORTHO05D005261 0.0e+00 1790.4 1867 56.3
THA.LOC104803581 Tarenaya hassleriana HOM05D002037 ORTHO05D005261 0.0e+00 1785.8 1896 55.5
CDE02G1944 Ceratophyllum demersum HOM05D002037 ORTHO05D005261 0.0e+00 1784.2 1890 55.7
Rhsim07G0173400 Rhododendron simsii HOM05D002037 ORTHO05D005261 0.0e+00 1751.1 1723 58.8
Thhalv10024189m.g Eutrema salsugineum HOM05D002037 ORTHO05D005261 0.0e+00 1732.2 1910 52.9
A03p60560 Brassica napus HOM05D002037 ORTHO05D005261 0.0e+00 1716.8 1908 53.6
BraA03t15097Z Brassica rapa HOM05D002037 ORTHO05D005261 0.0e+00 1713.7 1882 53.9
BcaB03g12684 Brassica carinata HOM05D002037 ORTHO05D005261 0.0e+00 1707.6 1894 53.2
AL7G20910 Arabidopsis lyrata HOM05D002037 ORTHO05D005261 0.0e+00 1706.8 1915 52.2
C07p58470 Brassica napus HOM05D002037 ORTHO05D005261 0.0e+00 1706.4 1878 53.6
BolC7t46302H Brassica oleracea HOM05D002037 ORTHO05D005261 0.0e+00 1706.4 1912 53.3
BcaC01g01107 Brassica carinata HOM05D002037 ORTHO05D005261 0.0e+00 1679.5 1877 52.7
C03p88150 Brassica napus HOM05D002037 ORTHO05D005261 0.0e+00 1678.3 1889 52.5
Aa31LG2G19150 Aethionema arabicum HOM05D002037 ORTHO05D005261 0.0e+00 1670.2 1887 52.6
BolC3t21123H Brassica oleracea HOM05D002037 ORTHO05D005261 0.0e+00 1669.1 1889 52.3
A08p18770 Brassica napus HOM05D002037 ORTHO05D005261 0.0e+00 1666.4 1887 52.2
BraA08t33838Z Brassica rapa HOM05D002037 ORTHO05D005261 0.0e+00 1666.4 1887 52.2
Carub.0007s0937 Capsella rubella HOM05D002037 ORTHO05D005261 0.0e+00 1665.2 1902 52.1
CARHR239070 Cardamine hirsuta HOM05D002037 ORTHO05D005261 0.0e+00 1654.0 1904 52.0
AT4G31160 Arabidopsis thaliana HOM05D002037 ORTHO05D005261 0.0e+00 1653.3 1883 51.7
HPP92_025041 Vanilla planifolia HOM05D002037 ORTHO05D005261 0.0e+00 1637.9 1916 52.7
unitig_26.g8827 Utricularia gibba HOM05D002037 ORTHO05D005261 0.0e+00 1611.7 1882 52.3
Zm00001eb434410 Zea mays HOM05D002037 ORTHO05D005261 0.0e+00 1600.5 1876 50.9
Zm00001eb076460 Zea mays HOM05D002037 ORTHO05D005261 0.0e+00 1557.3 1859 50.2
Dinv37481 Davidia involucrata HOM05D002037 ORTHO05D005261 0.0e+00 1454.5 1260 66.0
Eucgr.C00279 Eucalyptus grandis HOM05D002037 ORTHO05D005261 0.0e+00 1452.6 1239 65.2
Mapoly0062s0116 Marchantia polymorpha HOM05D002037 ORTHO05D005261 0.0e+00 1432.5 1951 46.8
Pp3c1_12700 Physcomitrium patens HOM05D002037 ORTHO05D005261 0.0e+00 1393.3 1911 46.0
Pp3c1_12703 Physcomitrium patens HOM05D002037 ORTHO05D005261 0.0e+00 1393.3 1911 46.0
Actinidia25728 Actinidia chinensis HOM05D002037 ORTHO05D005261 0.0e+00 1389.8 1843 47.4
Pp3c2_24840 Physcomitrium patens HOM05D002037 ORTHO05D005261 0.0e+00 1369.0 1848 46.9
Hma1.2p1_0214F.1_g090640 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 0.0e+00 1362.8 1244 63.3
BcaNung01540 Brassica carinata HOM05D002037 ORTHO05D005261 0.0e+00 1353.2 1326 57.2
MBI09_g01931_MAGBIO Magnolia biondii HOM05D002037 ORTHO05D005261 0.0e+00 1343.6 1529 55.1
Nitab4.5_0009273g0010 Nicotiana tabacum HOM05D002037 ORTHO05D005261 0.0e+00 1283.9 994 69.3
AagrBONN_evm.TU.Sc2ySwM_117.676 Anthoceros agrestis HOM05D002037 ORTHO05D005261 0.0e+00 1195.3 1784 44.1
Sp7g29040 Schrenkiella parvula HOM05D002037 ORTHO05D005261 0.0e+00 1157.1 1499 49.2
Oeu057143.1 Olea europaea HOM05D002037 ORTHO05D005261 0.0e+00 1114.0 1469 50.3
Dinv09451 Davidia involucrata HOM05D002037 ORTHO05D005261 0.0e+00 1093.2 945 65.2
Hma1.2p1_0319F.1_g123860 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 0.0e+00 1080.5 924 65.3
Lj1g0010809 Lotus japonicus HOM05D002037 ORTHO05D005261 1.8e-290 1003.8 1314 51.1
Nitab4.5_0003528g0010 Nicotiana tabacum HOM05D002037 ORTHO05D005261 7.3e-284 981.9 742 69.7
Dinv09452 Davidia involucrata HOM05D002037 ORTHO05D005261 4.7e-283 979.2 865 64.6
Migut.E01409 Erythranthe guttata HOM05D002037 ORTHO05D005261 3.4e-281 973.0 1845 38.2
CBR_g37392 Chara braunii HOM05D002037 ORTHO05D000002 3.0e-277 959.9 1614 39.7
SEGI_24212 Sequoiadendron giganteum HOM05D002037 ORTHO05D005261 1.3e-243 848.2 812 59.5
PSO170G5891 Papaver somniferum HOM05D002037 ORTHO05D005261 7.9e-238 828.9 862 55.8
Hma1.2p1_0214F.1_g090650 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 1.4e-194 685.3 496 69.4
Os04g0691200 Oryza sativa ssp. japonica HOM05D002037 ORTHO05D005261 4.4e-180 637.1 642 54.5
SEGI_28363 Sequoiadendron giganteum HOM05D002037 ORTHO05D005261 7.5e-180 636.3 651 55.5
Glyma.14G131100 Glycine max HOM05D002037 ORTHO05D005261 1.1e-170 605.9 713 50.2
Dinv37482 Davidia involucrata HOM05D002037 ORTHO05D005261 4.3e-159 567.4 501 61.3
SHI50541 Sapria himalayana HOM05D002037 ORTHO05D005261 3.5e-153 547.7 615 52.5
Hma1.2p1_2010F.1_g311000 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 1.7e-152 545.4 339 76.7
Hma1.2p1_1382F.1_g279390 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 5.8e-140 503.8 439 60.8
Hma1.2p1_2176F.1_g316130 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 2.4e-130 471.9 439 58.5
Aqoxy4G02471 Aquilegia oxysepala HOM05D002037 ORTHO05D005261 9.0e-117 426.8 1226 29.4
SHI21131 Sapria himalayana HOM05D002037 ORTHO05D005261 9.0e-109 400.2 423 55.3
FAN20G0200 Fragaria x ananassa HOM05D002037 ORTHO05D005261 6.7e-96 357.5 483 46.6
Migut.E01404 Erythranthe guttata HOM05D002037 ORTHO05D005261 3.9e-88 331.6 639 37.9
Migut.E01403 Erythranthe guttata HOM05D002037 ORTHO05D005261 8.0e-81 307.4 461 42.5
Cre17.g725450 Chlamydomonas reinhardtii HOM05D002037 ORTHO05D005261 5.7e-79 301.2 2071 22.4
Hund03252 Selenicereus undatus HOM05D002037 ORTHO05D005261 2.9e-75 288.9 841 33.2
Lj1g0019909 Lotus japonicus HOM05D002037 ORTHO05D005261 3.4e-63 248.8 160 76.9
Hma1.2p1_1382F.1_g279380 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 2.8e-62 245.7 314 52.9
SEGI_07751 Sequoiadendron giganteum HOM05D002037 ORTHO05D005261 8.6e-59 234.2 479 36.3
BcaNung01541 Brassica carinata HOM05D002037 ORTHO05D005261 3.6e-57 228.8 525 35.8
Hma1.2p1_2176F.1_g316120 Hydrangea macrophylla HOM05D002037 ORTHO05D005586 8.9e-56 224.2 173 72.8
TPR.G39361 Trifolium pratense HOM05D002037 ORTHO05D005261 5.6e-50 204.9 264 47.7
TPR.G7111 Trifolium pratense HOM05D002037 ORTHO05D005261 1.4e-40 173.7 233 51.1
Gohir.D08G274833 Gossypium hirsutum HOM05D002037 ORTHO05D005261 2.6e-31 142.9 76 86.8
Potri.006G280600 Populus trichocarpa HOM05D003201 ORTHO05D008914 8.7e-19 101.3 182 43.4
Dinv03356 Davidia involucrata HOM05D002037 ORTHO05D005261 1.8e-16 93.6 165 36.4
Dinv42062 Davidia involucrata HOM05D000142 ORTHO05D000124 6.4e-14 85.1 60 65.0
arahy.Tifrunner.gnm1.ann1.ME62WN Arachis hypogaea HOM05D002037 ORTHO05D005261 1.0e-11 77.8 94 45.7
Hund03253 Selenicereus undatus HOM05D002037 ORTHO05D005261 2.3e-11 76.6 52 65.4
MD08G1134600 Malus domestica HOM05D002037 ORTHO05D005261 1.1e-10 74.3 58 62.1
Nitab4.5_0026868g0020 Nicotiana tabacum HOM05D002037 ORTHO05D005261 9.6e-10 71.2 52 55.8
Nitab4.5_0000919g0010 Nicotiana tabacum HOM05D002037 ORTHO05D021575 1.6e-09 70.5 53 60.4
TPR.G29968 Trifolium pratense HOM05D001758 ORTHO05D005969 4.8e-09 68.9 33 81.8
Ah.04g156720 Amaranthus hybridus HOM05D002037 ORTHO05D005261 1.7e-06 60.5 39 84.6


User provided reference genes

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