Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold2726G54193 Striga asiatica HOM05D004777 ORTHO05D006240 4.7e-55 217.6 109 100.0
SGA_v2.0_scaffold18G08226 Striga asiatica HOM05D007685 ORTHO05D009136 1.8e-19 99.4 56 87.5
SGA_v2.0_scaffold135G34858 Striga asiatica HOM05D004777 ORTHO05D006240 6.8e-14 80.9 77 58.4
Migut.H00126 Erythranthe guttata HOM05D004777 ORTHO05D006240 8.9e-14 80.5 94 53.2
PSO017G2091 Papaver somniferum HOM05D004777 ORTHO05D006240 1.2e-10 70.1 87 47.1
unitig_21.g20495 Utricularia gibba HOM05D004777 ORTHO05D006240 1.2e-10 70.1 77 53.2
MSTRG.3173 Avicennia marina HOM05D004777 ORTHO05D006240 1.6e-10 69.7 77 51.9
PSO478G4796 Papaver somniferum HOM05D004777 ORTHO05D006240 1.6e-10 69.7 87 47.1
SalBow1G4936 Salvia bowleyana HOM05D004777 ORTHO05D006240 2.0e-10 69.3 77 54.5
Oeu043064.1 Olea europaea HOM05D004777 ORTHO05D006240 2.7e-10 68.9 77 53.2
Eucgr.I01816 Eucalyptus grandis HOM05D004777 ORTHO05D006240 4.6e-10 68.2 87 49.4
Lalb_Chr21g0319421 Lupinus albus HOM05D004777 ORTHO05D006240 6.0e-10 67.8 87 49.4
arahy.Tifrunner.gnm1.ann1.8Y3CFZ Arachis hypogaea HOM05D004777 ORTHO05D006240 7.8e-10 67.4 87 46.0
Duzib187G0683 Durio zibethinus HOM05D004777 ORTHO05D006240 1.0e-09 67.0 88 47.7
arahy.Tifrunner.gnm1.ann1.8ZV6UW Arachis hypogaea HOM05D004777 ORTHO05D006240 1.3e-09 66.6 87 46.0
Duzib147G0776 Durio zibethinus HOM05D004777 ORTHO05D006240 1.3e-09 66.6 88 47.7
Thecc.04G008400 Theobroma cacao HOM05D004777 ORTHO05D006240 1.3e-09 66.6 88 48.9
Lalb_Chr06g0176061 Lupinus albus HOM05D004777 ORTHO05D006240 1.7e-09 66.2 87 49.4
Lsat_1_v5_gn_0_26221 Lactuca sativa HOM05D004777 ORTHO05D006240 2.3e-09 65.9 77 46.8
Haze_14664 Corylus avellana HOM05D004777 ORTHO05D006240 3.9e-09 65.1 87 48.3
Prupe.3G283500 Prunus persica HOM05D004777 ORTHO05D006240 3.9e-09 65.1 88 46.6
QL02p076729 Quercus lobata HOM05D004777 ORTHO05D006240 3.9e-09 65.1 88 46.6
Zm00001eb042520 Zea mays HOM05D004777 ORTHO05D006240 3.9e-09 65.1 87 47.1
Dinv33499 Davidia involucrata HOM05D004777 ORTHO05D006240 5.0e-09 64.7 78 50.0
Hma1.2p1_0802F.1_g220410 Hydrangea macrophylla HOM05D004777 ORTHO05D006240 5.0e-09 64.7 87 50.6
Nn4g22807 Nelumbo nucifera HOM05D004777 ORTHO05D006240 5.0e-09 64.7 87 48.3
RcHm_v2.0_Chr2g0171371 Rosa chinensis HOM05D004777 ORTHO05D006240 5.0e-09 64.7 87 46.0
Sc16g0005400 Simmondsia chinensis HOM05D004777 ORTHO05D006240 5.0e-09 64.7 88 44.3
TAR622G1080 Trochodendron aralioides HOM05D004777 ORTHO05D006240 6.6e-09 64.3 88 46.6
ECA246G3514 Erigeron canadensis HOM05D004777 ORTHO05D006240 8.6e-09 63.9 80 45.0
MD09G1035000 Malus domestica HOM05D004777 ORTHO05D006240 8.6e-09 63.9 88 47.7
GSVIVG01032488001 Vitis vinifera HOM05D004777 ORTHO05D006240 8.6e-09 63.9 88 47.7
CiPaw.03G037400 Carya illinoinensis HOM05D004777 ORTHO05D006240 1.1e-08 63.5 87 47.1
Lj7A591G73 Lonicera japonica HOM05D004777 ORTHO05D006240 1.1e-08 63.5 100 43.0
MBI10_g11072_MAGBIO Magnolia biondii HOM05D004777 ORTHO05D006240 1.1e-08 63.5 78 47.4
Medtr6g007607 Medicago truncatula HOM05D004777 ORTHO05D006240 1.1e-08 63.5 87 48.3
HanXRQChr17g0547881 Helianthus annuus HOM05D004777 ORTHO05D006240 1.5e-08 63.2 77 48.1
Manes.15G183100 Manihot esculenta HOM05D004777 ORTHO05D006240 1.5e-08 63.2 87 47.1
Cc07_g02330 Coffea canephora HOM05D004777 ORTHO05D006240 1.9e-08 62.8 77 50.6
Os08g0382400 Oryza sativa ssp. japonica HOM05D004777 ORTHO05D006240 1.9e-08 62.8 88 44.3
Glyma.13G169500 Glycine max HOM05D004777 ORTHO05D006240 2.5e-08 62.4 87 47.1
Lj2g0000040 Lotus japonicus HOM05D004777 ORTHO05D006240 2.5e-08 62.4 88 45.5
THA.LOC104802404 Tarenaya hassleriana HOM05D004777 ORTHO05D006240 2.5e-08 62.4 77 48.1
AUR62043215 Chenopodium quinoa HOM05D004777 ORTHO05D006240 3.3e-08 62.0 88 44.3
Potri.017G072800 Populus trichocarpa HOM05D004777 ORTHO05D006240 3.3e-08 62.0 77 50.6
Hund02275 Selenicereus undatus HOM05D004777 ORTHO05D006240 3.3e-08 62.0 87 44.8
Solyc02g086910.4 Solanum lycopersicum HOM05D004777 ORTHO05D006240 3.3e-08 62.0 93 47.3
Sopen02g031680 Solanum pennellii HOM05D004777 ORTHO05D006240 3.3e-08 62.0 93 47.3
PGSC0003DMG401000527 Solanum tuberosum HOM05D004777 ORTHO05D006240 3.3e-08 62.0 93 47.3
CSS0014422 Camellia sinensis var. sinensis HOM05D004777 ORTHO05D006240 4.3e-08 61.6 77 49.4
CSS0014615 Camellia sinensis var. sinensis HOM05D004777 ORTHO05D006240 4.3e-08 61.6 77 49.4
AUR62035505 Chenopodium quinoa HOM05D004777 ORTHO05D006240 4.3e-08 61.6 88 43.2
Ciclev10015286m.g Citrus clementina HOM05D004777 ORTHO05D006240 4.3e-08 61.6 78 47.4
Potri.001G351400 Populus trichocarpa HOM05D004777 ORTHO05D006240 4.3e-08 61.6 86 47.7
Actinidia16931 Actinidia chinensis HOM05D004777 ORTHO05D006240 7.3e-08 60.8 78 47.4
Ah.04g163480 Amaranthus hybridus HOM05D004777 ORTHO05D006240 7.3e-08 60.8 87 43.7
CARHR075480 Cardamine hirsuta HOM05D004777 ORTHO05D006240 7.3e-08 60.8 78 50.0
Ca_04203_v3 Cicer arietinum L. HOM05D004777 ORTHO05D006240 7.3e-08 60.8 77 49.4
Lju41A35T60 Lonicera japonica HOM05D004777 ORTHO05D006240 7.3e-08 60.8 77 46.8
FvH4_6g50590 Fragaria vesca HOM05D004777 ORTHO05D006240 9.5e-08 60.5 87 44.8
FAN05G4199 Fragaria x ananassa HOM05D004777 ORTHO05D006240 9.5e-08 60.5 87 44.8
FAN14G1693 Fragaria x ananassa HOM05D004777 ORTHO05D006240 9.5e-08 60.5 87 44.8
FAN14G5049 Fragaria x ananassa HOM05D004777 ORTHO05D006240 9.5e-08 60.5 87 44.8
Glyma.19G009700 Glycine max HOM05D004777 ORTHO05D006240 9.5e-08 60.5 87 46.0
PGR142G2638 Punica granatum HOM05D004777 ORTHO05D006240 9.5e-08 60.5 77 50.6
TWI56G1110 Tripterygium wilfordii HOM05D004777 ORTHO05D006240 9.5e-08 60.5 86 47.7
vmacro18239 Vaccinium macrocarpon HOM05D004777 ORTHO05D006240 9.5e-08 60.5 77 48.1
HPP92_019954 Vanilla planifolia HOM05D004777 ORTHO05D006240 9.5e-08 60.5 88 45.5
CANSAT64G2847 Cannabis sativa HOM05D004777 ORTHO05D006240 1.2e-07 60.1 87 43.7
MD17G1035100 Malus domestica HOM05D004777 ORTHO05D006240 1.2e-07 60.1 88 44.3
Carub.0003s0061 Capsella rubella HOM05D004777 ORTHO05D006240 1.6e-07 59.7 78 48.7
Gohir.A09G026100 Gossypium hirsutum HOM05D004777 ORTHO05D006240 1.6e-07 59.7 86 44.2
Phvul.004G017000 Phaseolus vulgaris HOM05D004777 ORTHO05D006240 1.6e-07 59.7 77 46.8
Sabra16G0231000 Salix brachista HOM05D004777 ORTHO05D006240 1.6e-07 59.7 86 47.7
Atru.BG.27.p Acer truncatum HOM05D004777 ORTHO05D006240 2.1e-07 59.3 77 44.2
Gorai.001G261200 Gossypium raimondii HOM05D004777 ORTHO05D006240 2.1e-07 59.3 88 43.2
Sp3g00590 Schrenkiella parvula HOM05D004777 ORTHO05D006240 2.1e-07 59.3 77 49.4
Aqoxy3G01003 Aquilegia oxysepala HOM05D004777 ORTHO05D006240 2.8e-07 58.9 86 45.3
AL3G10690 Arabidopsis lyrata HOM05D004777 ORTHO05D006240 2.8e-07 58.9 78 48.7
Rhsim08G0055400 Rhododendron simsii HOM05D004777 ORTHO05D006240 2.8e-07 58.9 78 50.0
Sabra17G0060200 Salix brachista HOM05D004777 ORTHO05D006240 2.8e-07 58.9 77 49.4
TPR.G2322 Trifolium pratense HOM05D004777 ORTHO05D006240 2.8e-07 58.9 78 47.4
Cpa.g.sc186.15 Carica papaya HOM05D004777 ORTHO05D006240 3.6e-07 58.5 87 42.5
FAN09G3008 Fragaria x ananassa HOM05D004777 ORTHO05D006240 3.6e-07 58.5 87 43.7
Nitab4.5_0003337g0100 Nicotiana tabacum HOM05D004777 ORTHO05D006240 3.6e-07 58.5 92 44.6
CDE02G3984 Ceratophyllum demersum HOM05D004777 ORTHO05D006240 4.7e-07 58.2 77 44.2
Gohir.A07G219400 Gossypium hirsutum HOM05D004777 ORTHO05D006240 4.7e-07 58.2 87 42.5
Gohir.D07G226300 Gossypium hirsutum HOM05D004777 ORTHO05D006240 4.7e-07 58.2 87 42.5
Gohir.D09G025500 Gossypium hirsutum HOM05D004777 ORTHO05D006240 4.7e-07 58.2 86 43.0
Gorai.006G029700 Gossypium raimondii HOM05D004777 ORTHO05D006240 4.7e-07 58.2 86 43.0
Psat1g057880 Pisum sativum HOM05D004777 ORTHO05D006240 6.2e-07 57.8 77 48.1
EL10Ac4g08570 Beta vulgaris HOM05D004777 ORTHO05D006240 8.0e-07 57.4 88 43.2
Nitab4.5_0005176g0090 Nicotiana tabacum HOM05D004777 ORTHO05D006240 8.0e-07 57.4 77 48.1
ATR0730G054 Amborella trichopoda HOM05D004777 ORTHO05D006240 1.1e-06 57.0 80 45.0
CDE06G2275 Ceratophyllum demersum HOM05D004777 ORTHO05D006240 1.1e-06 57.0 77 42.9
AT3G01480 Arabidopsis thaliana HOM05D004777 ORTHO05D006240 1.4e-06 56.6 78 47.4
Aa31LG5G10580 Aethionema arabicum HOM05D004777 ORTHO05D006240 1.8e-06 56.2 77 45.5
RcHm_v2.0_Chr2g0171281 Rosa chinensis HOM05D004777 ORTHO05D006240 1.8e-06 56.2 77 44.2
Sed0004879 Sechium edule HOM05D004777 ORTHO05D006240 1.8e-06 56.2 77 45.5
ClCG10G014260 Citrullus lanatus HOM05D004777 ORTHO05D006240 3.1e-06 55.5 76 44.7
BraA05t23204Z Brassica rapa HOM05D004777 ORTHO05D006240 4.0e-06 55.1 79 46.8
DCAR_011208 Daucus carota HOM05D004777 ORTHO05D006240 4.0e-06 55.1 78 43.6
Thhalv10020775m.g Eutrema salsugineum HOM05D004777 ORTHO05D006240 4.0e-06 55.1 77 46.8
Peaxi162Scf00129g01038 Petunia axillaris HOM05D004777 ORTHO05D006240 4.0e-06 55.1 103 41.7
C09p75120 Brassica napus HOM05D004777 ORTHO05D006240 5.2e-06 54.7 81 45.7
CsaV3_3G042370 Cucumis sativus L. HOM05D004777 ORTHO05D006240 5.2e-06 54.7 77 46.8
MELO3C009952.2 Cucumis melo HOM05D004777 ORTHO05D006240 6.8e-06 54.3 76 44.7
TAR374G0088 Trochodendron aralioides HOM05D004777 ORTHO05D006240 6.8e-06 54.3 78 42.3
A05p44530 Brassica napus HOM05D004777 ORTHO05D006240 8.9e-06 53.9 79 45.6
VMungo0464G0641 Vigna mungo HOM05D004777 ORTHO05D006240 8.9e-06 53.9 77 45.5


User provided reference genes

Program Settings