Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold25G11139 Striga asiatica HOM05D006408 ORTHO05D008038 1.3e-219 766.1 392 100.0
Nitab4.5_0001168g0170 Nicotiana tabacum HOM05D006408 ORTHO05D008038 2.2e-102 376.7 361 57.3
MSTRG.22398 Avicennia marina HOM05D006408 ORTHO05D008038 5.3e-101 372.1 357 57.4
Migut.N03260 Erythranthe guttata HOM05D006408 ORTHO05D008038 5.9e-100 368.6 355 56.9
CAN.G288.5 Capsicum annuum HOM05D006408 ORTHO05D008038 3.8e-99 365.9 346 58.4
Peaxi162Scf00066g00222 Petunia axillaris HOM05D006408 ORTHO05D008038 1.6e-97 360.5 354 57.1
Ah.10g032560 Amaranthus hybridus HOM05D006408 ORTHO05D008038 2.7e-97 359.8 328 57.9
unitig_52.g17545 Utricularia gibba HOM05D006408 ORTHO05D008038 4.6e-97 359.0 360 56.4
Cfa018129 Carpinus fangiana HOM05D006408 ORTHO05D008038 6.1e-97 358.6 367 55.0
Sopen04g025710 Solanum pennellii HOM05D006408 ORTHO05D008038 3.0e-96 356.3 371 54.4
Aqoxy5G02393 Aquilegia oxysepala HOM05D006408 ORTHO05D008038 5.1e-96 355.5 373 53.1
Solyc04g057870.3 Solanum lycopersicum HOM05D006408 ORTHO05D008038 6.7e-96 355.1 341 57.5
TAR628G0457 Trochodendron aralioides HOM05D006408 ORTHO05D008038 6.7e-96 355.1 356 54.8
CANSAT25G1301 Cannabis sativa HOM05D006408 ORTHO05D008038 3.3e-95 352.8 321 58.3
Manes.02G168400 Manihot esculenta HOM05D006408 ORTHO05D008038 5.7e-95 352.1 331 56.5
MELO3C010512.2 Cucumis melo HOM05D006408 ORTHO05D008038 7.4e-95 351.7 417 50.6
ClCG11G015980 Citrullus lanatus HOM05D006408 ORTHO05D008038 1.7e-94 350.5 360 54.4
Cpa.g.sc26.317 Carica papaya HOM05D006408 ORTHO05D008038 2.2e-94 350.1 363 54.3
CsaV3_4G028270 Cucumis sativus L. HOM05D006408 ORTHO05D008038 4.8e-94 349.0 367 53.7
Cc10_g13760 Coffea canephora HOM05D006408 ORTHO05D008038 1.1e-93 347.8 353 55.0
CARHR021960 Cardamine hirsuta HOM05D006408 ORTHO05D008038 1.8e-93 347.1 364 53.8
PGSC0003DMG400028061 Solanum tuberosum HOM05D006408 ORTHO05D008038 2.4e-93 346.7 341 56.9
Potri.002G078900 Populus trichocarpa HOM05D006408 ORTHO05D008038 9.1e-93 344.7 365 54.2
MBI03_g48069_MAGBIO Magnolia biondii HOM05D006408 ORTHO05D008038 2.6e-92 343.2 348 53.7
RcHm_v2.0_Chr6g0296711 Rosa chinensis HOM05D006408 ORTHO05D008038 2.6e-92 343.2 353 53.8
Sp1g19130 Schrenkiella parvula HOM05D006408 ORTHO05D008038 2.6e-92 343.2 310 59.0
PSO017G3385 Papaver somniferum HOM05D006408 ORTHO05D008038 4.5e-92 342.4 321 57.0
PSO170G2303 Papaver somniferum HOM05D006408 ORTHO05D008038 4.5e-92 342.4 333 56.2
Prupe.1G489500 Prunus persica HOM05D006408 ORTHO05D008038 7.7e-92 341.7 351 54.7
CiPaw.16G022700 Carya illinoinensis HOM05D006408 ORTHO05D008038 1.0e-91 341.3 315 57.8
EL10Ac1g01346 Beta vulgaris HOM05D006408 ORTHO05D008038 1.7e-91 340.5 359 53.2
THA.LOC104814021 Tarenaya hassleriana HOM05D006408 ORTHO05D008038 1.7e-91 340.5 310 58.4
HanXRQChr02g0045521 Helianthus annuus HOM05D006408 ORTHO05D008038 2.2e-91 340.1 359 52.4
Oeu047179.2 Olea europaea HOM05D006408 ORTHO05D008038 8.5e-91 338.2 349 53.9
Nn1g08961 Nelumbo nucifera HOM05D006408 ORTHO05D008038 1.1e-90 337.8 364 52.7
Atru.chr13.1568 Acer truncatum HOM05D006408 ORTHO05D008038 2.5e-90 336.7 330 55.2
Ca_16607_v3 Cicer arietinum L. HOM05D006408 ORTHO05D008038 3.2e-90 336.3 365 54.0
Glyma.04G087000 Glycine max HOM05D006408 ORTHO05D008038 3.2e-90 336.3 312 57.1
Glyma.06G117500 Glycine max HOM05D006408 ORTHO05D008038 3.2e-90 336.3 365 52.3
Medtr3g088605 Medicago truncatula HOM05D006408 ORTHO05D008038 7.2e-90 335.1 356 52.8
MD08G1159400 Malus domestica HOM05D006408 ORTHO05D008038 1.2e-89 334.3 368 51.6
CDE06G0572 Ceratophyllum demersum HOM05D006408 ORTHO05D008038 1.6e-89 334.0 366 52.5
AL1G34740 Arabidopsis lyrata HOM05D006408 ORTHO05D008038 2.1e-89 333.6 363 51.8
Lalb_Chr08g0241101 Lupinus albus HOM05D006408 ORTHO05D008038 2.7e-89 333.2 356 52.8
VMungo1309G0712 Vigna mungo HOM05D006408 ORTHO05D008038 3.6e-89 332.8 346 54.0
FAN20G2488 Fragaria x ananassa HOM05D006408 ORTHO05D008038 4.7e-89 332.4 364 52.5
Eucgr.A00239 Eucalyptus grandis HOM05D006408 ORTHO05D008038 7.9e-89 331.6 292 60.3
Sed0021255 Sechium edule HOM05D006408 ORTHO05D008038 1.4e-88 330.9 339 54.3
Thecc.08G133100 Theobroma cacao HOM05D006408 ORTHO05D008038 1.8e-88 330.5 354 52.3
Aa31LG7G5580 Aethionema arabicum HOM05D006408 ORTHO05D008038 3.0e-88 329.7 387 49.9
PGR083G0137 Punica granatum HOM05D006408 ORTHO05D008038 3.0e-88 329.7 348 52.6
Actinidia15213 Actinidia chinensis HOM05D006408 ORTHO05D008038 1.1e-87 327.8 349 53.0
Phvul.009G129900 Phaseolus vulgaris HOM05D006408 ORTHO05D008038 1.1e-87 327.8 366 51.4
A06p17690 Brassica napus HOM05D006408 ORTHO05D008038 3.3e-87 326.2 310 56.5
C05p20590 Brassica napus HOM05D006408 ORTHO05D008038 3.3e-87 326.2 310 56.5
BolC5t30757H Brassica oleracea HOM05D006408 ORTHO05D008038 3.3e-87 326.2 310 56.5
BraA06t24861Z Brassica rapa HOM05D006408 ORTHO05D008038 3.3e-87 326.2 310 56.5
Gorai.005G087700 Gossypium raimondii HOM05D006408 ORTHO05D008038 3.3e-87 326.2 371 51.2
Psat5g084760 Pisum sativum HOM05D006408 ORTHO05D008038 4.4e-87 325.9 364 52.7
TPR.G28811 Trifolium pratense HOM05D006408 ORTHO05D008038 1.3e-86 324.3 366 52.7
Nitab4.5_0003978g0010 Nicotiana tabacum HOM05D006408 ORTHO05D008038 2.2e-86 323.6 292 59.9
FAN24G2159 Fragaria x ananassa HOM05D006408 ORTHO05D008038 2.8e-86 323.2 355 52.7
Hma1.2p1_1121F.1_g259280 Hydrangea macrophylla HOM05D006408 ORTHO05D008038 3.7e-86 322.8 362 51.4
ATR0568G086 Amborella trichopoda HOM05D006408 ORTHO05D008038 4.8e-86 322.4 316 55.1
CSS0036755 Camellia sinensis var. sinensis HOM05D006408 ORTHO05D008038 4.8e-86 322.4 353 52.4
FAN27G1901 Fragaria x ananassa HOM05D006408 ORTHO05D008038 4.8e-86 322.4 367 51.0
Ciclev10001886m.g Citrus clementina HOM05D006408 ORTHO05D008038 1.1e-85 321.2 336 54.2
ECA236G3303 Erigeron canadensis HOM05D006408 ORTHO05D008038 7.0e-85 318.5 325 53.2
arahy.Tifrunner.gnm1.ann1.227FW7 Arachis hypogaea HOM05D006408 ORTHO05D008038 9.1e-85 318.2 369 51.8
AT1G21600 Arabidopsis thaliana HOM05D006408 ORTHO05D008038 2.0e-84 317.0 309 55.7
DCAR_003587 Daucus carota HOM05D006408 ORTHO05D008038 2.6e-84 316.6 294 57.1
arahy.Tifrunner.gnm1.ann1.8X384Y Arachis hypogaea HOM05D006408 ORTHO05D008038 3.5e-84 316.2 370 50.5
FAN15G0171 Fragaria x ananassa HOM05D006408 ORTHO05D008038 7.7e-84 315.1 288 57.6
GSVIVG01008807001 Vitis vinifera HOM05D006408 ORTHO05D008038 2.9e-83 313.2 257 61.9
Lj4A682G50 Lonicera japonica HOM05D006408 ORTHO05D008038 3.8e-83 312.8 282 58.5
Carub.0001s2103 Capsella rubella HOM05D006408 ORTHO05D008038 8.5e-83 311.6 259 61.4
CDE04G0676 Ceratophyllum demersum HOM05D006408 ORTHO05D008038 1.9e-82 310.5 354 50.3
HPP92_009911 Vanilla planifolia HOM05D006408 ORTHO05D008038 1.9e-82 310.5 319 53.0
Lj1g0002290 Lotus japonicus HOM05D006408 ORTHO05D008038 2.5e-82 310.1 331 53.5
QL09p032485 Quercus lobata HOM05D006408 ORTHO05D008038 3.2e-82 309.7 258 61.2
BcaC05g26077 Brassica carinata HOM05D006408 ORTHO05D008038 4.2e-82 309.3 287 56.8
BcaB07g32155 Brassica carinata HOM05D006408 ORTHO05D008038 7.2e-82 308.5 259 61.0
Lsat_1_v5_gn_1_7780 Lactuca sativa HOM05D006408 ORTHO05D008038 2.7e-81 306.6 368 48.6
FvH4_2g27850 Fragaria vesca HOM05D006408 ORTHO05D008038 3.6e-81 306.2 262 59.9
Gohir.D02G078200 Gossypium hirsutum HOM05D006408 ORTHO05D008038 1.4e-80 304.3 368 48.9
Sc26g0002930 Simmondsia chinensis HOM05D006408 ORTHO05D008038 4.8e-78 295.8 280 55.7
Thhalv10007813m.g Eutrema salsugineum HOM05D006408 ORTHO05D008038 2.4e-77 293.5 245 61.6
Os11g0110100 Oryza sativa ssp. japonica HOM05D006408 ORTHO05D008038 2.1e-73 280.4 265 55.1
Os12g0110400 Oryza sativa ssp. japonica HOM05D006408 ORTHO05D008038 2.1e-73 280.4 262 55.3
A08p28910 Brassica napus HOM05D006408 ORTHO05D008038 3.0e-72 276.6 240 60.0
Zm00001eb195160 Zea mays HOM05D006408 ORTHO05D008038 3.0e-72 276.6 292 50.3
BolC8t49731H Brassica oleracea HOM05D006408 ORTHO05D008038 6.8e-72 275.4 373 44.5
Hund17341 Selenicereus undatus HOM05D006408 ORTHO05D008038 1.2e-71 274.6 293 55.3
AUR62007717 Chenopodium quinoa HOM05D006408 ORTHO05D008038 7.0e-69 265.4 324 49.4
AUR62013426 Chenopodium quinoa HOM05D006408 ORTHO05D008038 1.6e-68 264.2 330 48.5
Rhsim06G0091400 Rhododendron simsii HOM05D006408 ORTHO05D008038 3.2e-66 256.5 297 50.5
SalBow2G2951 Salvia bowleyana HOM05D006408 ORTHO05D008038 5.2e-64 249.2 214 62.1
Gohir.A02G071000 Gossypium hirsutum HOM05D006408 ORTHO05D008038 4.9e-62 242.7 368 42.4
SEGI_15088 Sequoiadendron giganteum HOM05D006408 ORTHO05D008038 6.6e-59 232.3 254 48.4
CsaV3_5G019980 Cucumis sativus L. HOM05D006408 ORTHO05D008038 2.1e-57 227.3 240 51.2
COL.COLO4_06961 Corchorus olitorius HOM05D006408 ORTHO05D008038 2.9e-54 216.9 226 54.4
Mapoly0008s0219 Marchantia polymorpha HOM05D006408 ORTHO05D008038 3.2e-53 213.4 351 39.0
Pp3c1_1000 Physcomitrium patens HOM05D006408 ORTHO05D008038 3.5e-52 209.9 338 39.9
C08p20930 Brassica napus HOM05D006408 ORTHO05D008038 3.0e-51 206.8 206 54.9
Dinv14691 Davidia involucrata HOM05D006408 ORTHO05D008038 3.0e-51 206.8 181 60.2
vmacro20822 Vaccinium macrocarpon HOM05D006408 ORTHO05D008038 4.4e-47 193.0 202 51.5
Duzib093G1884 Durio zibethinus HOM05D006408 ORTHO05D008038 5.4e-45 186.0 259 42.5
CsaV3_UNG224650 Cucumis sativus L. HOM05D006408 ORTHO05D008038 9.5e-42 175.3 220 47.7
SMO146G0302 Selaginella moellendorffii HOM05D006408 ORTHO05D008038 1.4e-40 171.4 243 40.7
MBI03_g39652_MAGBIO Magnolia biondii HOM05D006408 ORTHO05D008038 8.9e-40 168.7 109 72.5
BraA08t34821Z Brassica rapa HOM05D006408 ORTHO05D008038 7.1e-37 159.1 179 50.8
MBI03_g28486_MAGBIO Magnolia biondii HOM05D006408 ORTHO05D008038 2.4e-32 144.1 279 36.9
CsaV3_5G018920 Cucumis sativus L. HOM05D006408 ORTHO05D008038 1.7e-27 127.9 97 63.9
BolC5t30909H Brassica oleracea HOM05D006408 ORTHO05D008038 4.3e-26 123.2 61 88.5
AagrBONN_evm.TU.Sc2ySwM_344.4901 Anthoceros agrestis HOM05D006408 ORTHO05D008038 8.4e-22 109.0 135 45.9
Aqoxy219s001 Aquilegia oxysepala HOM05D006408 ORTHO05D008038 5.4e-21 106.3 94 59.6
Sabra02G0061800 Salix brachista HOM05D006408 ORTHO05D008038 2.7e-20 104.0 96 57.3
Actinidia21278 Actinidia chinensis HOM05D006408 ORTHO05D008038 3.5e-20 103.6 66 71.2
CBR_g40143 Chara braunii HOM05D006408 ORTHO05D008038 4.5e-15 86.7 364 23.6
MBI14_g28586_MAGBIO Magnolia biondii HOM05D007982 ORTHO05D010255 6.7e-11 72.8 40 85.0
CsaV3_UNG111870 Cucumis sativus L. HOM05D006408 ORTHO05D008038 6.9e-08 62.8 58 53.4
CsaV3_UNG115880 Cucumis sativus L. HOM05D006408 ORTHO05D008038 6.9e-08 62.8 58 53.4
Actinidia21279 Actinidia chinensis HOM05D006408 ORTHO05D008038 1.5e-07 61.6 161 37.3


User provided reference genes

Program Settings