Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold24G10244 Striga asiatica HOM05D004741 ORTHO05D005454 1.5e-123 446.0 209 100.0
MSTRG.20476 Avicennia marina HOM05D004741 ORTHO05D005454 2.7e-104 382.1 200 86.0
Oeu016078.1 Olea europaea HOM05D004741 ORTHO05D005454 3.0e-103 378.6 200 86.0
CSS0005545 Camellia sinensis var. sinensis HOM05D004741 ORTHO05D005454 8.2e-101 370.5 200 85.0
Migut.K00575 Erythranthe guttata HOM05D004741 ORTHO05D005454 1.1e-100 370.2 200 85.0
Peaxi162Scf00005g04810 Petunia axillaris HOM05D004741 ORTHO05D005454 4.1e-100 368.2 200 83.5
vmacro21376 Vaccinium macrocarpon HOM05D004741 ORTHO05D005454 7.0e-100 367.5 200 84.5
CAN.G673.1 Capsicum annuum HOM05D004741 ORTHO05D005454 5.9e-99 364.4 200 82.0
Dinv22023 Davidia involucrata HOM05D004741 ORTHO05D005454 2.9e-98 362.1 200 82.5
unitig_744.g24377 Utricularia gibba HOM05D004741 ORTHO05D005454 5.0e-98 361.3 200 80.0
Nitab4.5_0006397g0010 Nicotiana tabacum HOM05D004741 ORTHO05D005454 8.5e-98 360.5 200 82.0
Solyc07g017640.2 Solanum lycopersicum HOM05D004741 ORTHO05D005454 1.1e-97 360.1 200 80.5
Nitab4.5_0000159g0030 Nicotiana tabacum HOM05D004741 ORTHO05D005454 1.5e-97 359.8 199 82.9
PGSC0003DMG400002300 Solanum tuberosum HOM05D004741 ORTHO05D005454 1.5e-97 359.8 200 80.5
Sopen07g006470 Solanum pennellii HOM05D004741 ORTHO05D005454 2.5e-97 359.0 200 80.0
Lsat_1_v5_gn_4_135621 Lactuca sativa HOM05D004741 ORTHO05D005454 7.2e-97 357.5 200 80.0
ECA246G1320 Erigeron canadensis HOM05D004741 ORTHO05D005454 1.6e-96 356.3 200 80.5
ClCG08G013810 Citrullus lanatus HOM05D004741 ORTHO05D005454 2.1e-96 355.9 205 78.5
CsaV3_2G032600 Cucumis sativus L. HOM05D004741 ORTHO05D005454 4.7e-96 354.8 205 78.0
PSO210G2241 Papaver somniferum HOM05D004741 ORTHO05D005454 4.7e-96 354.8 200 80.5
DCAR_020033 Daucus carota HOM05D004741 ORTHO05D005454 6.1e-96 354.4 200 78.5
Lsat_1_v5_gn_6_106561 Lactuca sativa HOM05D004741 ORTHO05D005454 6.1e-96 354.4 200 79.5
Nn8g39668 Nelumbo nucifera HOM05D004741 ORTHO05D005454 6.1e-96 354.4 201 81.1
Lj4A81G69 Lonicera japonica HOM05D004741 ORTHO05D005454 8.0e-96 354.0 199 79.4
MELO3C011313.2 Cucumis melo HOM05D004741 ORTHO05D005454 1.0e-95 353.6 200 80.0
Sed0002897 Sechium edule HOM05D004741 ORTHO05D005454 1.0e-95 353.6 200 79.5
Aqoxy5G01951 Aquilegia oxysepala HOM05D004741 ORTHO05D005454 2.3e-95 352.4 205 77.6
Cc00_g23510 Coffea canephora HOM05D004741 ORTHO05D005454 4.0e-95 351.7 200 77.5
GSVIVG01009251001 Vitis vinifera HOM05D004741 ORTHO05D005454 5.2e-95 351.3 200 78.5
CiPaw.07G232700 Carya illinoinensis HOM05D004741 ORTHO05D005454 2.6e-94 349.0 200 77.5
PSO761G0470 Papaver somniferum HOM05D004741 ORTHO05D005454 2.6e-94 349.0 200 79.5
TAR625G0772 Trochodendron aralioides HOM05D004741 ORTHO05D005454 3.3e-94 348.6 200 78.0
HanXRQChr10g0277671 Helianthus annuus HOM05D004741 ORTHO05D005454 2.8e-93 345.5 192 80.2
Eucgr.C04030 Eucalyptus grandis HOM05D004741 ORTHO05D005454 3.7e-93 345.1 200 77.0
arahy.Tifrunner.gnm1.ann1.68HE9A Arachis hypogaea HOM05D004741 ORTHO05D005454 1.8e-92 342.8 200 77.0
Thecc.09G013800 Theobroma cacao HOM05D004741 ORTHO05D005454 4.1e-92 341.7 200 75.5
TWI32G1217 Tripterygium wilfordii HOM05D004741 ORTHO05D005454 9.1e-92 340.5 200 76.0
AUR62035754 Chenopodium quinoa HOM05D004741 ORTHO05D005454 1.2e-91 340.1 200 78.0
AT4G31770 Arabidopsis thaliana HOM05D004741 ORTHO05D005454 1.6e-91 339.7 200 74.0
arahy.Tifrunner.gnm1.ann1.HM8GSV Arachis hypogaea HOM05D004741 ORTHO05D005454 1.6e-91 339.7 200 76.0
QL02p018098 Quercus lobata HOM05D004741 ORTHO05D005454 1.6e-91 339.7 200 74.5
Sc02g0008350 Simmondsia chinensis HOM05D004741 ORTHO05D005454 1.6e-91 339.7 200 76.5
FvH4_2g41360 Fragaria vesca HOM05D004741 ORTHO05D005454 2.0e-91 339.3 200 77.0
CDE06G0415 Ceratophyllum demersum HOM05D004741 ORTHO05D005454 5.9e-91 337.8 205 75.6
Aa31LG2G18560 Aethionema arabicum HOM05D004741 ORTHO05D005454 1.0e-90 337.0 200 73.5
Carub.0007s0879 Capsella rubella HOM05D004741 ORTHO05D005454 1.0e-90 337.0 200 73.0
FAN15G2922 Fragaria x ananassa HOM05D004741 ORTHO05D005454 1.0e-90 337.0 200 76.5
Lalb_Chr08g0244491 Lupinus albus HOM05D004741 ORTHO05D005454 1.3e-90 336.7 200 77.0
Atru.chr7.2571 Acer truncatum HOM05D004741 ORTHO05D005454 1.7e-90 336.3 200 75.0
AL7G20240 Arabidopsis lyrata HOM05D004741 ORTHO05D005454 2.2e-90 335.9 200 73.5
ATR0767G225 Amborella trichopoda HOM05D004741 ORTHO05D005454 3.8e-90 335.1 202 72.8
EL10Ac1g02297 Beta vulgaris HOM05D004741 ORTHO05D005454 8.5e-90 334.0 200 75.0
Duzib168G2074 Durio zibethinus HOM05D004741 ORTHO05D005454 8.5e-90 334.0 200 74.5
CARHR239670 Cardamine hirsuta HOM05D004741 ORTHO05D005454 1.1e-89 333.6 200 72.5
Gohir.D11G176300 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.1e-89 333.6 200 75.5
RcHm_v2.0_Chr6g0299131 Rosa chinensis HOM05D004741 ORTHO05D005454 1.1e-89 333.6 200 75.0
Ca_15788_v3 Cicer arietinum L. HOM05D004741 ORTHO05D005454 1.5e-89 333.2 200 75.0
Medtr3g105810 Medicago truncatula HOM05D004741 ORTHO05D005454 2.5e-89 332.4 200 75.0
VMungo1309G1293 Vigna mungo HOM05D004741 ORTHO05D005454 2.5e-89 332.4 200 76.0
Glyma.04G059700 Glycine max HOM05D004741 ORTHO05D005454 3.2e-89 332.0 200 76.0
RcHm_v2.0_Chr2g0135121 Rosa chinensis HOM05D004741 ORTHO05D005454 3.2e-89 332.0 201 74.6
Manes.03G006700 Manihot esculenta HOM05D004741 ORTHO05D005454 7.2e-89 330.9 200 76.0
Phvul.009G085900 Phaseolus vulgaris HOM05D004741 ORTHO05D005454 7.2e-89 330.9 200 76.0
Psat5g034520 Pisum sativum HOM05D004741 ORTHO05D005454 7.2e-89 330.9 200 75.0
MD15G1043800 Malus domestica HOM05D004741 ORTHO05D005454 1.2e-88 330.1 200 74.5
THA.LOC104803607 Tarenaya hassleriana HOM05D004741 ORTHO05D005454 1.6e-88 329.7 200 72.5
BcaNung01502 Brassica carinata HOM05D004741 ORTHO05D005454 2.7e-88 328.9 205 69.8
Cpa.g.sc40.1 Carica papaya HOM05D004741 ORTHO05D005454 4.7e-88 328.2 200 72.5
Lj1g0020479 Lotus japonicus HOM05D004741 ORTHO05D005454 1.4e-87 326.6 200 74.5
Sp7g29560 Schrenkiella parvula HOM05D004741 ORTHO05D005454 1.4e-87 326.6 200 71.5
SEGI_18909 Sequoiadendron giganteum HOM05D004741 ORTHO05D005454 1.8e-87 326.2 198 74.7
Zm00001eb215780 Zea mays HOM05D004741 ORTHO05D005454 1.8e-87 326.2 200 73.5
BraA03t15138Z Brassica rapa HOM05D004741 ORTHO05D005454 2.3e-87 325.9 206 69.9
A03p60970 Brassica napus HOM05D004741 ORTHO05D005454 3.0e-87 325.5 206 69.9
BcaB03g12718 Brassica carinata HOM05D004741 ORTHO05D005454 6.8e-87 324.3 200 71.5
C07p58870 Brassica napus HOM05D004741 ORTHO05D005454 6.8e-87 324.3 206 69.4
BolC7t46334H Brassica oleracea HOM05D004741 ORTHO05D005454 6.8e-87 324.3 206 69.4
BraA08t33808Z Brassica rapa HOM05D004741 ORTHO05D005454 8.8e-87 323.9 201 71.6
COL.COLO4_18967 Corchorus olitorius HOM05D004741 ORTHO05D005454 1.5e-86 323.2 200 72.5
Potri.018G015300 Populus trichocarpa HOM05D004741 ORTHO05D005454 1.5e-86 323.2 205 71.7
Sabra18G0018800 Salix brachista HOM05D004741 ORTHO05D005454 2.6e-86 322.4 200 72.5
BcaNung04120 Brassica carinata HOM05D004741 ORTHO05D005454 4.4e-86 321.6 205 68.3
A08p18460 Brassica napus HOM05D004741 ORTHO05D005454 9.8e-86 320.5 201 70.1
Cfa013018 Carpinus fangiana HOM05D004741 ORTHO05D005454 9.8e-86 320.5 229 65.1
Thhalv10025305m.g Eutrema salsugineum HOM05D004741 ORTHO05D005454 9.8e-86 320.5 200 69.5
Mapoly0014s0124 Marchantia polymorpha HOM05D004741 ORTHO05D005454 2.2e-85 319.3 205 67.3
Aqoxy1G00870 Aquilegia oxysepala HOM05D004741 ORTHO05D005454 2.8e-85 318.9 194 73.2
TPR.G1862 Trifolium pratense HOM05D004741 ORTHO05D005454 8.3e-85 317.4 200 71.5
Atru.BG.288.p Acer truncatum HOM05D004741 ORTHO05D005454 3.3e-81 305.4 194 70.1
MBI16_g14670_MAGBIO Magnolia biondii HOM05D004741 ORTHO05D005454 5.5e-81 304.7 192 71.4
Pp3c24_19510 Physcomitrium patens HOM05D004741 ORTHO05D005454 5.5e-81 304.7 203 67.0
Ah.04g152730 Amaranthus hybridus HOM05D004741 ORTHO05D005454 2.8e-80 302.4 235 62.1
CBR_g10907 Chara braunii HOM05D004741 ORTHO05D005454 2.8e-80 302.4 200 64.5
C03p87550 Brassica napus HOM05D004741 ORTHO05D005454 3.6e-80 302.0 206 67.0
BolC3t21075H Brassica oleracea HOM05D004741 ORTHO05D005454 3.6e-80 302.0 206 67.0
Aqoxy4G02579 Aquilegia oxysepala HOM05D004741 ORTHO05D005454 8.0e-80 300.8 186 73.7
SMO284G0001 Selaginella moellendorffii HOM05D004741 ORTHO05D005454 2.0e-78 296.2 200 65.0
Gohir.A02G000200 Gossypium hirsutum HOM05D004741 ORTHO05D005454 2.6e-78 295.8 192 71.9
Gohir.A03G000005 Gossypium hirsutum HOM05D004741 ORTHO05D005454 2.6e-78 295.8 198 71.2
Gohir.A02G000050 Gossypium hirsutum HOM05D004741 ORTHO05D005454 3.4e-78 295.4 198 69.7
Gohir.A11G330400 Gossypium hirsutum HOM05D004741 ORTHO05D005454 4.4e-78 295.0 192 70.8
SMO145G0212 Selaginella moellendorffii HOM05D004741 ORTHO05D005454 4.4e-78 295.0 200 65.0
SGA_v2.0_scaffold443G51691 Striga asiatica HOM05D004741 ORTHO05D005454 1.7e-77 293.1 155 87.7
Gohir.1Z049533 Gossypium hirsutum HOM05D004741 ORTHO05D005454 6.3e-77 291.2 192 69.8
SalBow7G0863 Salvia bowleyana HOM05D004741 ORTHO05D005454 1.8e-76 289.7 159 82.4
SalBow7G1987 Salvia bowleyana HOM05D004741 ORTHO05D005454 1.8e-76 289.7 159 82.4
Gohir.A05G415901 Gossypium hirsutum HOM05D004741 ORTHO05D005454 7.0e-76 287.7 185 70.8
MCO02G476 Micromonas commoda HOM05D004741 ORTHO05D005454 1.6e-75 286.6 206 60.2
Gohir.A09G249600 Gossypium hirsutum HOM05D004741 ORTHO05D005454 4.5e-75 285.0 197 68.5
Cre02.g146950 Chlamydomonas reinhardtii HOM05D004741 ORTHO05D005454 1.3e-74 283.5 203 62.1
SGA_v2.0_scaffold48G18066 Striga asiatica HOM05D004741 ORTHO05D005454 2.6e-70 269.2 148 84.5
HPP92_007721 Vanilla planifolia HOM05D004741 ORTHO05D005454 3.4e-70 268.9 159 76.1
BcaNung01500 Brassica carinata HOM05D004741 ORTHO05D005454 4.4e-70 268.5 199 62.3
BcaB02g11404 Brassica carinata HOM05D004741 ORTHO05D005454 3.5e-67 258.8 167 69.5
PSO210G0837 Papaver somniferum HOM05D004741 ORTHO05D005454 1.6e-64 250.0 165 70.3
Dinv44899 Davidia involucrata HOM05D004741 ORTHO05D005454 2.8e-64 249.2 144 79.9
PRCOL_00004462 Prasinoderma coloniale HOM05D004741 ORTHO05D005454 5.2e-63 245.0 231 50.2
Rhsim06G0068400 Rhododendron simsii HOM05D004741 ORTHO05D005454 2.6e-62 242.7 206 60.2
MD08G1051300 Malus domestica HOM05D004741 ORTHO05D005454 3.7e-61 238.8 153 72.5
BcaC01g01061 Brassica carinata HOM05D004741 ORTHO05D005454 7.3e-57 224.6 171 60.8
Gohir.1Z049306 Gossypium hirsutum HOM05D004741 ORTHO05D005454 5.2e-55 218.4 152 69.1
Gohir.1Z049408 Gossypium hirsutum HOM05D004741 ORTHO05D005454 5.2e-55 218.4 152 69.1
Gohir.1Z049565 Gossypium hirsutum HOM05D004741 ORTHO05D005454 5.2e-55 218.4 152 69.1
FvH4_6g29560 Fragaria vesca HOM05D004741 ORTHO05D005454 1.2e-54 217.2 140 70.7
FAN14G3005 Fragaria x ananassa HOM05D004741 ORTHO05D005454 1.2e-54 217.2 140 70.7
Gohir.1Z049424 Gossypium hirsutum HOM05D004741 ORTHO05D005454 5.8e-54 214.9 152 68.4
Gohir.A07G233600 Gossypium hirsutum HOM05D004741 ORTHO05D005454 2.7e-51 206.1 192 54.2
Haze_27111 Corylus avellana HOM05D004741 ORTHO05D005454 8.1e-48 194.5 208 43.3
Cfa025655 Carpinus fangiana HOM05D004741 ORTHO05D005454 5.8e-46 188.3 200 47.0
MD13G1228500 Malus domestica HOM05D004741 ORTHO05D005454 1.0e-42 177.6 115 70.4
Hund05236 Selenicereus undatus HOM05D004741 ORTHO05D005454 1.7e-42 176.8 106 72.6
AUR62033828 Chenopodium quinoa HOM05D004741 ORTHO05D005454 1.5e-41 173.7 186 49.5
Prupe.1G397300 Prunus persica HOM05D004741 ORTHO05D005454 1.5e-41 173.7 111 72.1
Gohir.A12G000500 Gossypium hirsutum HOM05D004741 ORTHO05D005454 3.6e-40 169.1 139 62.6
Sopen07g006070 Solanum pennellii HOM05D004741 ORTHO05D005454 6.2e-40 168.3 86 88.4
Gohir.A12G001050 Gossypium hirsutum HOM05D004741 ORTHO05D005454 5.8e-38 161.8 96 72.9
Gohir.A12G001100 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.9e-36 156.8 106 68.9
Lsat_1_v5_gn_9_90121 Lactuca sativa HOM05D000676 ORTHO05D001458 8.7e-34 147.9 108 64.8
Gohir.1Z049489 Gossypium hirsutum HOM05D004741 ORTHO05D005454 3.1e-31 139.4 130 55.4
Os03g0725300 Oryza sativa ssp. japonica HOM05D004741 ORTHO05D005454 3.5e-27 125.9 84 66.7
Gohir.A07G000083 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.0e-26 124.4 87 67.8
Gohir.D12G000832 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.2e-22 110.9 75 68.0
RcHm_v2.0_Chr1g0357361 Rosa chinensis HOM05D004741 ORTHO05D005454 1.1e-15 87.8 52 75.0
SalBow7G3287 Salvia bowleyana HOM05D004741 ORTHO05D005454 3.1e-15 86.3 43 88.4
AagrBONN_evm.TU.Sc2ySwM_369.559 Anthoceros agrestis HOM05D004741 ORTHO05D005454 2.2e-08 63.5 44 54.5
ATR0582G232 Amborella trichopoda HOM05D004741 ORTHO05D005454 2.6e-06 56.6 39 53.8
Pp3c16_14300 Physcomitrium patens HOM05D005251 ORTHO05D006680 3.4e-06 56.2 201 28.9


User provided reference genes

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