Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold239G44014 Striga asiatica HOM05D004270 ORTHO05D005037 3.7e-157 558.1 279 100.0
SGA_v2.0_scaffold49G18204 Striga asiatica HOM05D004270 ORTHO05D005037 3.5e-147 525.0 286 91.6
Migut.H01658 Erythranthe guttata HOM05D004270 ORTHO05D005037 3.0e-146 521.9 279 91.0
MSTRG.16093 Avicennia marina HOM05D004270 ORTHO05D005037 6.6e-146 520.8 278 91.4
ECA238G3087 Erigeron canadensis HOM05D004270 ORTHO05D005037 5.6e-145 517.7 275 90.9
CSS0035574 Camellia sinensis var. sinensis HOM05D004270 ORTHO05D005037 9.5e-145 516.9 275 91.6
Actinidia07391 Actinidia chinensis HOM05D004270 ORTHO05D005037 1.6e-144 516.2 276 90.9
arahy.Tifrunner.gnm1.ann1.PIH8R2 Arachis hypogaea HOM05D004270 ORTHO05D005037 4.7e-144 514.6 276 89.1
MSTRG.13089 Avicennia marina HOM05D004270 ORTHO05D005037 4.7e-144 514.6 275 91.3
HanXRQChr14g0449761 Helianthus annuus HOM05D004270 ORTHO05D005037 4.7e-144 514.6 275 89.5
DCAR_016846 Daucus carota HOM05D004270 ORTHO05D005037 1.0e-143 513.5 276 89.5
VMungo1383G2841 Vigna mungo HOM05D004270 ORTHO05D005037 1.0e-143 513.5 276 88.8
arahy.Tifrunner.gnm1.ann1.D5XWDC Arachis hypogaea HOM05D004270 ORTHO05D005037 1.8e-143 512.7 276 88.8
Cc11_g02350 Coffea canephora HOM05D004270 ORTHO05D005037 2.3e-143 512.3 275 90.2
CAN.G84.19 Capsicum annuum HOM05D004270 ORTHO05D005037 3.1e-143 511.9 276 89.5
Solyc11g072690.2 Solanum lycopersicum HOM05D004270 ORTHO05D005037 3.1e-143 511.9 276 89.5
Sopen11g030360 Solanum pennellii HOM05D004270 ORTHO05D005037 3.1e-143 511.9 276 89.5
Thecc.06G006500 Theobroma cacao HOM05D004270 ORTHO05D005037 4.0e-143 511.5 275 89.8
Lj1g0019682 Lotus japonicus HOM05D004270 ORTHO05D005037 5.2e-143 511.1 276 89.1
Phvul.008G049000 Phaseolus vulgaris HOM05D004270 ORTHO05D005037 5.2e-143 511.1 275 88.4
PGSC0003DMG400025362 Solanum tuberosum HOM05D004270 ORTHO05D005037 6.8e-143 510.8 276 89.1
Atru.chr1.67 Acer truncatum HOM05D004270 ORTHO05D005037 1.2e-142 510.0 276 88.8
Aqoxy7G03543 Aquilegia oxysepala HOM05D004270 ORTHO05D005037 1.2e-142 510.0 276 89.1
Nn6g34391 Nelumbo nucifera HOM05D004270 ORTHO05D005037 1.2e-142 510.0 276 89.5
TAR636G3127 Trochodendron aralioides HOM05D004270 ORTHO05D005037 1.2e-142 510.0 276 88.8
Thhalv10018956m.g Eutrema salsugineum HOM05D004270 ORTHO05D005037 2.0e-142 509.2 276 88.8
CiPaw.14G018200 Carya illinoinensis HOM05D004270 ORTHO05D005037 2.6e-142 508.8 275 88.7
Duzib268G0296 Durio zibethinus HOM05D004270 ORTHO05D005037 5.8e-142 507.7 276 88.0
Glyma.09G244900 Glycine max HOM05D004270 ORTHO05D005037 5.8e-142 507.7 275 88.0
Lsat_1_v5_gn_2_88340 Lactuca sativa HOM05D004270 ORTHO05D005037 5.8e-142 507.7 275 88.4
TPR.G21772 Trifolium pratense HOM05D004270 ORTHO05D005037 5.8e-142 507.7 276 87.7
Carub.0002s2636 Capsella rubella HOM05D004270 ORTHO05D005037 7.5e-142 507.3 277 88.8
AUR62009294 Chenopodium quinoa HOM05D004270 ORTHO05D005037 9.8e-142 506.9 275 88.7
AT1G79500 Arabidopsis thaliana HOM05D004270 ORTHO05D005037 1.3e-141 506.5 276 89.1
CARHR073160 Cardamine hirsuta HOM05D004270 ORTHO05D005037 1.3e-141 506.5 276 88.8
EL10Ac2g04029 Beta vulgaris HOM05D004270 ORTHO05D005037 1.7e-141 506.1 275 88.0
Ciclev10005458m.g Citrus clementina HOM05D004270 ORTHO05D005037 1.7e-141 506.1 276 87.7
Hma1.2p1_0151F.1_g067120 Hydrangea macrophylla HOM05D004270 ORTHO05D005037 1.7e-141 506.1 275 89.1
Medtr7g081220 Medicago truncatula HOM05D004270 ORTHO05D005037 1.7e-141 506.1 276 88.8
Sp5g34553 Schrenkiella parvula HOM05D004270 ORTHO05D005037 1.7e-141 506.1 276 88.4
BcaC03g15900 Brassica carinata HOM05D004270 ORTHO05D005037 2.2e-141 505.8 275 88.7
Ca_08047_v3 Cicer arietinum L. HOM05D004270 ORTHO05D005037 2.2e-141 505.8 275 88.4
Ca_08053_v3 Cicer arietinum L. HOM05D004270 ORTHO05D005037 2.2e-141 505.8 275 88.4
Thhalv10008359m.g Eutrema salsugineum HOM05D004270 ORTHO05D005037 2.2e-141 505.8 275 89.5
Psat3g099560 Pisum sativum HOM05D004270 ORTHO05D005037 2.2e-141 505.8 276 88.0
AL2G40110 Arabidopsis lyrata HOM05D004270 ORTHO05D005037 2.9e-141 505.4 276 88.8
Gohir.D08G090400 Gossypium hirsutum HOM05D004270 ORTHO05D005037 2.9e-141 505.4 276 88.0
Sed0021681 Sechium edule HOM05D004270 ORTHO05D005037 2.9e-141 505.4 276 88.8
PGR119G1968 Punica granatum HOM05D004270 ORTHO05D005037 3.7e-141 505.0 276 87.7
Gorai.004G095400 Gossypium raimondii HOM05D004270 ORTHO05D005037 4.9e-141 504.6 276 88.0
Os12g0210800 Oryza sativa ssp. japonica HOM05D004270 ORTHO05D005037 4.9e-141 504.6 276 88.8
Ah.15g099350 Amaranthus hybridus HOM05D004270 ORTHO05D005037 6.4e-141 504.2 276 86.6
BcaB02g07218 Brassica carinata HOM05D004270 ORTHO05D005037 6.4e-141 504.2 275 88.7
Potri.002G061900 Populus trichocarpa HOM05D004270 ORTHO05D005037 6.4e-141 504.2 276 87.7
AUR62041708 Chenopodium quinoa HOM05D004270 ORTHO05D005037 8.3e-141 503.8 275 88.4
AUR62043393 Chenopodium quinoa HOM05D004270 ORTHO05D005037 8.3e-141 503.8 275 88.4
THA.LOC104812380 Tarenaya hassleriana HOM05D004270 ORTHO05D005037 8.3e-141 503.8 276 87.7
GSVIVG01036737001 Vitis vinifera HOM05D004270 ORTHO05D005037 8.3e-141 503.8 275 88.7
CARHR016810 Cardamine hirsuta HOM05D004270 ORTHO05D005037 1.1e-140 503.4 275 89.1
ClCG03G001640 Citrullus lanatus HOM05D004270 ORTHO05D005037 1.4e-140 503.1 276 88.4
Ah.15g099360 Amaranthus hybridus HOM05D004270 ORTHO05D005037 1.9e-140 502.7 276 86.2
Manes.03G080050 Manihot esculenta HOM05D004270 ORTHO05D005037 1.9e-140 502.7 276 87.0
Sc15g0006060 Simmondsia chinensis HOM05D004270 ORTHO05D005037 1.9e-140 502.7 276 87.3
CsaV3_1G034040 Cucumis sativus L. HOM05D004270 ORTHO05D005037 3.2e-140 501.9 276 88.0
Duzib187G1348 Durio zibethinus HOM05D004270 ORTHO05D005037 3.2e-140 501.9 276 88.4
PSO675G6017 Papaver somniferum HOM05D004270 ORTHO05D005037 3.2e-140 501.9 276 87.7
Gohir.A08G080300 Gossypium hirsutum HOM05D004270 ORTHO05D005037 4.1e-140 501.5 276 87.7
CANSAT78G1193 Cannabis sativa HOM05D004270 ORTHO05D005037 7.0e-140 500.7 276 86.6
MELO3C020651.2 Cucumis melo HOM05D004270 ORTHO05D005037 7.0e-140 500.7 276 88.0
TPR.G29107 Trifolium pratense HOM05D004270 ORTHO05D005037 7.0e-140 500.7 276 87.3
arahy.Tifrunner.gnm1.ann1.WIVF2E Arachis hypogaea HOM05D004270 ORTHO05D005037 9.2e-140 500.4 283 85.2
PSO782G4107 Papaver somniferum HOM05D004270 ORTHO05D005037 1.2e-139 500.0 276 87.0
Potri.005G199100 Populus trichocarpa HOM05D004270 ORTHO05D005037 1.2e-139 500.0 275 86.9
vmacro23274 Vaccinium macrocarpon HOM05D004270 ORTHO05D005037 2.0e-139 499.2 305 81.3
AT1G16340 Arabidopsis thaliana HOM05D004270 ORTHO05D005037 3.5e-139 498.4 275 88.0
PSO732G0600 Papaver somniferum HOM05D004270 ORTHO05D005037 3.5e-139 498.4 276 87.3
RcHm_v2.0_Chr5g0023881 Rosa chinensis HOM05D004270 ORTHO05D005037 6.0e-139 497.7 275 86.5
BraA02t07287Z Brassica rapa HOM05D004270 ORTHO05D005037 7.8e-139 497.3 276 88.4
FvH4_3g14500 Fragaria vesca HOM05D004270 ORTHO05D005037 1.0e-138 496.9 275 86.2
Prupe.4G129800 Prunus persica HOM05D004270 ORTHO05D005037 1.0e-138 496.9 276 86.6
HPP92_024995 Vanilla planifolia HOM05D004270 ORTHO05D005037 1.0e-138 496.9 276 86.6
FAN25G1815 Fragaria x ananassa HOM05D004270 ORTHO05D005037 2.3e-138 495.7 275 86.2
AL1G28460 Arabidopsis lyrata HOM05D004270 ORTHO05D005037 3.0e-138 495.4 275 86.9
THA.LOC104813606 Tarenaya hassleriana HOM05D004270 ORTHO05D005037 3.0e-138 495.4 277 86.6
TWI12G0564 Tripterygium wilfordii HOM05D004270 ORTHO05D005037 5.0e-138 494.6 275 86.9
MD10G1213400 Malus domestica HOM05D004270 ORTHO05D005037 6.6e-138 494.2 276 85.9
A02p22860 Brassica napus HOM05D004270 ORTHO05D005037 8.6e-138 493.8 279 87.1
C02p36680 Brassica napus HOM05D004270 ORTHO05D005037 1.5e-137 493.0 276 87.3
COL.COLO4_12345 Corchorus olitorius HOM05D004270 ORTHO05D005037 7.3e-137 490.7 260 91.9
Sabra05G0151600 Salix brachista HOM05D004270 ORTHO05D005037 2.8e-136 488.8 297 80.1
Carub.0001s1608 Capsella rubella HOM05D004270 ORTHO05D005037 3.6e-136 488.4 275 87.6
BolC6t38147H Brassica oleracea HOM05D004270 ORTHO05D005037 4.7e-136 488.0 275 87.6
BraA07t30356Z Brassica rapa HOM05D004270 ORTHO05D005037 1.1e-135 486.9 275 87.3
A07p27110 Brassica napus HOM05D004270 ORTHO05D005037 1.4e-135 486.5 275 86.9
BolC2t09663H Brassica oleracea HOM05D004270 ORTHO05D005037 3.1e-135 485.3 280 86.1
unitig_744.g24505 Utricularia gibba HOM05D004270 ORTHO05D005037 1.2e-134 483.4 276 85.5
Rhsim06G0243500 Rhododendron simsii HOM05D004270 ORTHO05D005037 7.5e-134 480.7 297 80.8
Lalb_Chr19g0126381 Lupinus albus HOM05D004270 ORTHO05D005037 1.3e-133 479.9 267 86.9
Zm00001eb138330 Zea mays HOM05D004270 ORTHO05D005037 2.9e-133 478.8 276 84.4
Haze_02880 Corylus avellana HOM05D004270 ORTHO05D005037 4.9e-133 478.0 260 86.9
MD05G1236400 Malus domestica HOM05D004270 ORTHO05D005037 4.9e-133 478.0 276 84.1
vmacro11688 Vaccinium macrocarpon HOM05D004270 ORTHO05D005037 4.9e-133 478.0 349 71.1
BcaC08g45353 Brassica carinata HOM05D004270 ORTHO05D005037 8.3e-133 477.2 259 90.0
Glyma.18G248300 Glycine max HOM05D004270 ORTHO05D005037 8.3e-133 477.2 259 88.0
SalBow8G2534 Salvia bowleyana HOM05D004270 ORTHO05D005037 1.9e-132 476.1 286 83.9
SalBow8G3927 Salvia bowleyana HOM05D004270 ORTHO05D005037 1.9e-132 476.1 286 83.9
MBI07_g44658_MAGBIO Magnolia biondii HOM05D004270 ORTHO05D005037 3.2e-132 475.3 276 85.1
QL04p092971 Quercus lobata HOM05D004270 ORTHO05D005037 3.2e-132 475.3 260 88.1
PGR119G0090 Punica granatum HOM05D004270 ORTHO05D005037 4.1e-132 474.9 276 84.1
Ah.15g099340 Amaranthus hybridus HOM05D004270 ORTHO05D005037 1.2e-131 473.4 261 85.8
QL04p091607 Quercus lobata HOM05D004270 ORTHO05D005037 2.7e-131 472.2 260 87.7
Lj7A89G45 Lonicera japonica HOM05D004270 ORTHO05D005037 3.0e-130 468.8 266 86.8
Lj7A89G46 Lonicera japonica HOM05D004270 ORTHO05D005037 3.0e-130 468.8 266 86.8
FAN16G1654 Fragaria x ananassa HOM05D004270 ORTHO05D005037 5.1e-130 468.0 259 86.5
FAN11G3302 Fragaria x ananassa HOM05D004270 ORTHO05D005037 1.1e-129 466.8 275 82.2
Oeu026000.2 Olea europaea HOM05D004270 ORTHO05D005037 1.5e-129 466.5 323 74.6
Rhsim03G0145800 Rhododendron simsii HOM05D004270 ORTHO05D005037 3.3e-129 465.3 299 78.9
BcaB05g25203 Brassica carinata HOM05D004270 ORTHO05D005037 5.6e-129 464.5 277 84.1
Aa31LG4G1520 Aethionema arabicum HOM05D004270 ORTHO05D005037 6.2e-128 461.1 260 88.5
CSS0009623 Camellia sinensis var. sinensis HOM05D004270 ORTHO05D005037 8.1e-128 460.7 246 90.7
C06p29850 Brassica napus HOM05D004270 ORTHO05D005037 1.1e-127 460.3 259 88.4
BcaC08g45351 Brassica carinata HOM05D004270 ORTHO05D005037 4.0e-127 458.4 271 84.1
Duzib187G1262 Durio zibethinus HOM05D004270 ORTHO05D005037 5.2e-127 458.0 255 88.2
SMO347G0325 Selaginella moellendorffii HOM05D004270 ORTHO05D005037 5.8e-126 454.5 268 81.7
Nitab4.5_0004015g0030 Nicotiana tabacum HOM05D004270 ORTHO05D005037 2.4e-124 449.1 275 81.1
ATR0743G256 Amborella trichopoda HOM05D004270 ORTHO05D005037 2.1e-123 446.0 244 88.1
DCAR_013716 Daucus carota HOM05D004270 ORTHO05D005037 2.1e-123 446.0 238 90.3
Pp3c22_7420 Physcomitrium patens HOM05D004270 ORTHO05D005037 3.5e-123 445.3 275 77.8
ATR0561G061 Amborella trichopoda HOM05D004270 ORTHO05D005037 6.0e-123 444.5 244 87.7
Hma1.2p1_2351F.1_g320490 Hydrangea macrophylla HOM05D004270 ORTHO05D005037 7.8e-123 444.1 255 85.5
Peaxi162Scf00616g00418 Petunia axillaris HOM05D004270 ORTHO05D005037 1.7e-122 443.0 276 79.3
FAN21G0266 Fragaria x ananassa HOM05D004270 ORTHO05D005037 3.6e-120 435.3 254 82.7
Eucgr.K01360 Eucalyptus grandis HOM05D004270 ORTHO05D005037 1.5e-118 429.9 234 88.0
AagrBONN_evm.TU.Sc2ySwM_344.2891 Anthoceros agrestis HOM05D004270 ORTHO05D005037 2.0e-118 429.5 274 73.4
Lj4A247G30 Lonicera japonica HOM05D004270 ORTHO05D005037 3.5e-115 418.7 229 89.1
PSO832G2042 Papaver somniferum HOM05D004270 ORTHO05D005037 1.1e-113 413.7 276 76.1
Mapoly0024s0056 Marchantia polymorpha HOM05D004270 ORTHO05D005037 4.5e-110 401.7 275 70.9
vmacro08704 Vaccinium macrocarpon HOM05D004270 ORTHO05D005037 5.4e-108 394.8 380 58.4
CiPaw.13G024200 Carya illinoinensis HOM05D004270 ORTHO05D005037 1.2e-107 393.7 217 87.1
RcHm_v2.0_Chr6g0274781 Rosa chinensis HOM05D004270 ORTHO05D005037 1.3e-101 373.6 261 72.8
Nitab4.5_0006659g0030 Nicotiana tabacum HOM05D004270 ORTHO05D005037 8.7e-98 360.9 195 88.7
CDE05G0560 Ceratophyllum demersum HOM05D004270 ORTHO05D005037 1.5e-94 350.1 191 85.3
arahy.Tifrunner.gnm1.ann1.S8QNVY Arachis hypogaea HOM05D004270 ORTHO05D005037 4.6e-91 338.6 267 65.9
QL04p093439 Quercus lobata HOM05D004270 ORTHO05D005037 1.1e-89 334.0 388 50.8
Cpa.g.sc32.74 Carica papaya HOM05D004270 ORTHO05D005037 5.7e-89 331.6 184 86.4
arahy.Tifrunner.gnm1.ann1.IC77ZE Arachis hypogaea HOM05D004270 ORTHO05D005037 1.8e-82 310.1 259 63.7
SHI21470 Sapria himalayana HOM05D004270 ORTHO05D005037 1.0e-77 294.3 266 59.4
CBR_g41577 Chara braunii HOM05D000019 ORTHO05D000048 7.9e-75 284.6 169 78.7
Cfa020378 Carpinus fangiana HOM05D004270 ORTHO05D005037 5.7e-73 278.5 233 63.5
Haze_26612 Corylus avellana HOM05D004270 ORTHO05D005037 3.6e-67 259.2 261 49.0
arahy.Tifrunner.gnm1.ann1.06J840 Arachis hypogaea HOM05D004270 ORTHO05D005037 1.8e-66 256.9 194 68.0
arahy.Tifrunner.gnm1.ann1.BQF4LJ Arachis hypogaea HOM05D004270 ORTHO05D005037 2.6e-49 199.9 133 72.2
arahy.Tifrunner.gnm1.ann1.C4QR2M Arachis hypogaea HOM05D004270 ORTHO05D005037 2.6e-49 199.9 133 72.2
arahy.Tifrunner.gnm1.ann1.IZH1PK Arachis hypogaea HOM05D004270 ORTHO05D005037 1.2e-46 191.0 181 58.6
QL04p092150 Quercus lobata HOM05D004270 ORTHO05D005037 1.5e-36 157.5 142 59.9
MBI10_g05703_MAGBIO Magnolia biondii HOM05D004270 ORTHO05D005037 5.0e-29 132.5 124 60.5
vmacro07967 Vaccinium macrocarpon HOM05D004270 ORTHO05D007590 7.0e-23 112.1 100 60.0
SEGI_39104 Sequoiadendron giganteum HOM05D004270 ORTHO05D005037 1.2e-22 111.3 78 70.5
Lsat_1_v5_gn_3_92901 Lactuca sativa HOM05D004270 ORTHO05D005037 2.7e-22 110.2 72 68.1
Lsat_1_v5_gn_2_10621 Lactuca sativa HOM05D004270 ORTHO05D005037 6.0e-22 109.0 57 93.0
arahy.Tifrunner.gnm1.ann1.J4JBIL Arachis hypogaea HOM05D004270 ORTHO05D005037 1.1e-20 104.8 88 63.6
arahy.Tifrunner.gnm1.ann1.SB2A23 Arachis hypogaea HOM05D004270 ORTHO05D005037 1.1e-20 104.8 88 63.6
SEGI_07848 Sequoiadendron giganteum HOM05D004270 ORTHO05D005037 9.9e-17 91.7 48 85.4
arahy.Tifrunner.gnm1.ann1.8HXD5I Arachis hypogaea HOM05D004270 ORTHO05D005037 1.7e-13 80.9 46 84.8
RcHm_v2.0_Chr2g0110821 Rosa chinensis HOM05D004270 ORTHO05D005037 1.9e-12 77.4 45 77.8
FAN12G0414 Fragaria x ananassa HOM05D000835 ORTHO05D035555 2.4e-10 70.5 90 46.7
FAN12G0605 Fragaria x ananassa HOM05D000835 ORTHO05D035555 2.4e-10 70.5 90 46.7
TAR636G1752 Trochodendron aralioides HOM05D004270 ORTHO05D005037 2.2e-08 63.9 40 82.5
Dinv19578 Davidia involucrata HOM05D006464 ORTHO05D007923 2.1e-06 57.4 41 73.2


User provided reference genes

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