Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold239G43999 Striga asiatica HOM05D003499 ORTHO05D004754 0.0e+00 3396.7 2064 100.0
MSTRG.14572 Avicennia marina HOM05D003499 ORTHO05D004754 0.0e+00 1822.0 2130 56.2
Migut.H01651 Erythranthe guttata HOM05D003499 ORTHO05D004754 0.0e+00 1705.6 2127 54.1
Oeu025990.2 Olea europaea HOM05D003499 ORTHO05D004754 0.0e+00 1637.1 2140 52.1
Cc00_g09120 Coffea canephora HOM05D003499 ORTHO05D004754 0.0e+00 1517.3 2158 48.6
GSVIVG01036698001 Vitis vinifera HOM05D003499 ORTHO05D004754 0.0e+00 1511.5 2162 49.6
CiPaw.15G111600 Carya illinoinensis HOM05D003499 ORTHO05D004754 0.0e+00 1511.1 2024 49.5
Potri.008G080900 Populus trichocarpa HOM05D003499 ORTHO05D004754 0.0e+00 1507.7 2159 48.2
QL04p095880 Quercus lobata HOM05D003499 ORTHO05D004754 0.0e+00 1492.6 2163 48.6
Gohir.A01G100800 Gossypium hirsutum HOM05D003499 ORTHO05D004754 0.0e+00 1492.2 2181 46.7
Gohir.D01G085300 Gossypium hirsutum HOM05D003499 ORTHO05D004754 0.0e+00 1491.1 2175 46.3
Gorai.002G110900 Gossypium raimondii HOM05D003499 ORTHO05D004754 0.0e+00 1486.5 2019 48.6
Actinidia26203 Actinidia chinensis HOM05D003499 ORTHO05D004754 0.0e+00 1467.6 2156 46.7
Dinv42452 Davidia involucrata HOM05D003499 ORTHO05D004754 0.0e+00 1467.2 2129 48.6
Duzib213G0086 Durio zibethinus HOM05D003499 ORTHO05D004754 0.0e+00 1458.0 2015 49.2
Dinv19570 Davidia involucrata HOM05D003499 ORTHO05D004754 0.0e+00 1451.4 2131 48.9
TWI38G0606 Tripterygium wilfordii HOM05D003499 ORTHO05D004754 0.0e+00 1444.1 2025 48.0
CAN.G374.15 Capsicum annuum HOM05D003499 ORTHO05D004754 0.0e+00 1442.9 2140 46.0
Lalb_Chr25g0284181 Lupinus albus HOM05D003499 ORTHO05D004754 0.0e+00 1441.0 2147 46.3
Thecc.07G189900 Theobroma cacao HOM05D003499 ORTHO05D004754 0.0e+00 1434.9 2002 48.2
Glyma.08G162300 Glycine max HOM05D003499 ORTHO05D004754 0.0e+00 1428.7 2155 45.7
Lalb_Chr01g0015591 Lupinus albus HOM05D003499 ORTHO05D004754 0.0e+00 1419.8 2155 46.6
Glyma.15G265300 Glycine max HOM05D003499 ORTHO05D004754 0.0e+00 1417.9 2157 45.5
PGSC0003DMG400016328 Solanum tuberosum HOM05D003499 ORTHO05D004754 0.0e+00 1413.3 2122 47.5
MD05G1240600 Malus domestica HOM05D003499 ORTHO05D004754 0.0e+00 1406.7 2019 48.2
Manes.16G052800 Manihot esculenta HOM05D003499 ORTHO05D004754 0.0e+00 1400.2 2137 45.9
Atru.chr1.17 Acer truncatum HOM05D003499 ORTHO05D004754 0.0e+00 1399.0 2017 47.5
Sopen06g018680 Solanum pennellii HOM05D003499 ORTHO05D004754 0.0e+00 1397.9 2127 46.7
RcHm_v2.0_Chr5g0023031 Rosa chinensis HOM05D003499 ORTHO05D004754 0.0e+00 1386.3 2008 47.4
Nitab4.5_0002333g0110 Nicotiana tabacum HOM05D003499 ORTHO05D004754 0.0e+00 1379.8 2115 46.1
Prupe.4G125000 Prunus persica HOM05D003499 ORTHO05D004754 0.0e+00 1377.1 2001 46.5
Nn7g38420 Nelumbo nucifera HOM05D003499 ORTHO05D004754 0.0e+00 1376.7 2168 46.1
Phvul.005G045700 Phaseolus vulgaris HOM05D003499 ORTHO05D004754 0.0e+00 1372.1 2174 44.3
Cfa017771 Carpinus fangiana HOM05D003499 ORTHO05D004754 0.0e+00 1371.3 2159 46.4
CiPaw.16G079000 Carya illinoinensis HOM05D003499 ORTHO05D004754 0.0e+00 1367.4 2166 45.2
FAN21G2046 Fragaria x ananassa HOM05D003499 ORTHO05D004754 0.0e+00 1356.7 2033 46.5
Ciclev10006542m.g Citrus clementina HOM05D003499 ORTHO05D004754 0.0e+00 1351.7 2150 46.1
FAN16G2389 Fragaria x ananassa HOM05D003499 ORTHO05D004754 0.0e+00 1343.6 2075 45.1
Sabra08G0060200 Salix brachista HOM05D003499 ORTHO05D004754 0.0e+00 1341.6 2316 42.3
Psat0s13g0320 Pisum sativum HOM05D003499 ORTHO05D004754 0.0e+00 1338.9 2153 44.0
FvH4_3g13850 Fragaria vesca HOM05D003499 ORTHO05D004754 0.0e+00 1333.5 2020 45.8
CANSAT56G3760 Cannabis sativa HOM05D003499 ORTHO05D004754 0.0e+00 1332.8 2008 45.9
HanXRQChr14g0459251 Helianthus annuus HOM05D003499 ORTHO05D004754 0.0e+00 1329.3 2111 44.7
Medtr2g063480 Medicago truncatula HOM05D003499 ORTHO05D004754 0.0e+00 1323.1 2168 43.7
Lj3g0016310 Lotus japonicus HOM05D003499 ORTHO05D004754 0.0e+00 1320.8 2149 44.9
TPR.G3598 Trifolium pratense HOM05D003499 ORTHO05D004754 0.0e+00 1315.1 2148 43.5
unitig_578.g16338 Utricularia gibba HOM05D003499 ORTHO05D004754 0.0e+00 1313.9 2123 45.6
VMungo1080G1290 Vigna mungo HOM05D003499 ORTHO05D004754 0.0e+00 1313.9 2169 43.9
Peaxi162Scf00579g00316 Petunia axillaris HOM05D003499 ORTHO05D004754 0.0e+00 1313.1 2127 45.1
ECA233G1650 Erigeron canadensis HOM05D003499 ORTHO05D004754 0.0e+00 1310.0 2126 44.1
FAN25G2460 Fragaria x ananassa HOM05D003499 ORTHO05D004754 0.0e+00 1303.5 2178 44.0
EL10Ac8g19951 Beta vulgaris HOM05D003499 ORTHO05D004754 0.0e+00 1296.6 2155 45.7
Carub.0002s2615 Capsella rubella HOM05D003499 ORTHO05D004754 0.0e+00 1290.0 2009 44.4
Nitab4.5_0005627g0040 Nicotiana tabacum HOM05D003499 ORTHO05D004754 0.0e+00 1283.9 2120 44.1
arahy.Tifrunner.gnm1.ann1.DHQL63 Arachis hypogaea HOM05D003499 ORTHO05D004754 0.0e+00 1273.1 2165 42.0
Lsat_1_v5_gn_8_41780 Lactuca sativa HOM05D003499 ORTHO05D004754 0.0e+00 1272.7 2001 44.9
AL2G39880 Arabidopsis lyrata HOM05D003499 ORTHO05D004754 0.0e+00 1267.3 1870 47.2
Sc05g0008250 Simmondsia chinensis HOM05D003499 ORTHO05D004754 0.0e+00 1259.2 2150 43.8
arahy.Tifrunner.gnm1.ann1.LW990M Arachis hypogaea HOM05D003499 ORTHO05D004754 0.0e+00 1257.7 2178 42.1
CDE02G3941 Ceratophyllum demersum HOM05D003499 ORTHO05D004754 0.0e+00 1252.7 2124 42.3
Aa31LG4G1710 Aethionema arabicum HOM05D003499 ORTHO05D004754 0.0e+00 1248.0 2019 44.8
Eucgr.F04480 Eucalyptus grandis HOM05D003499 ORTHO05D004754 0.0e+00 1241.1 2131 43.0
Aqoxy1G01362 Aquilegia oxysepala HOM05D003499 ORTHO05D004754 0.0e+00 1233.4 2150 45.0
Thhalv10017995m.g Eutrema salsugineum HOM05D003499 ORTHO05D004754 0.0e+00 1231.5 2018 44.0
CsaV3_7G023140 Cucumis sativus L. HOM05D003499 ORTHO05D004754 0.0e+00 1224.2 2114 43.2
AT1G79280 Arabidopsis thaliana HOM05D003499 ORTHO05D004754 0.0e+00 1223.0 1436 52.2
CARHR072950 Cardamine hirsuta HOM05D003499 ORTHO05D004754 0.0e+00 1216.4 2018 43.8
PSO675G8338 Papaver somniferum HOM05D003499 ORTHO05D004754 0.0e+00 1216.1 1849 44.3
A07p44380 Brassica napus HOM05D003499 ORTHO05D004754 0.0e+00 1211.8 2005 44.7
Hund21305 Selenicereus undatus HOM05D003499 ORTHO05D004754 0.0e+00 1207.2 2164 43.4
THA.LOC104813306 Tarenaya hassleriana HOM05D003499 ORTHO05D004754 0.0e+00 1207.2 1991 44.5
C06p53180 Brassica napus HOM05D003499 ORTHO05D004754 0.0e+00 1191.8 1831 46.4
AUR62014655 Chenopodium quinoa HOM05D003499 ORTHO05D004754 0.0e+00 1186.8 2184 43.1
DCAR_013704 Daucus carota HOM05D003499 ORTHO05D004754 0.0e+00 1186.4 2032 45.0
BolC6t40336H Brassica oleracea HOM05D003499 ORTHO05D004754 0.0e+00 1184.9 1860 45.7
Sed0001737 Sechium edule HOM05D003499 ORTHO05D004754 0.0e+00 1184.1 2135 43.3
Rhsim09G0000500 Rhododendron simsii HOM05D003499 ORTHO05D004754 0.0e+00 1182.5 2275 40.8
A07p27200 Brassica napus HOM05D003499 ORTHO05D004754 0.0e+00 1181.8 2145 41.9
Ah.09g236940 Amaranthus hybridus HOM05D003499 ORTHO05D004754 0.0e+00 1181.4 2129 43.7
TAR626G0290 Trochodendron aralioides HOM05D003499 ORTHO05D004754 0.0e+00 1180.2 1753 46.9
AUR62012541 Chenopodium quinoa HOM05D003499 ORTHO05D004754 0.0e+00 1179.9 2168 42.9
FAN11G2210 Fragaria x ananassa HOM05D003499 ORTHO05D004754 0.0e+00 1169.1 1507 49.8
BraA07t31947Z Brassica rapa HOM05D003499 ORTHO05D004754 0.0e+00 1159.8 2041 43.3
ClCG09G022890 Citrullus lanatus HOM05D003499 ORTHO05D004754 0.0e+00 1153.3 2126 41.5
PSO541G3284 Papaver somniferum HOM05D003499 ORTHO05D004754 0.0e+00 1137.1 1850 42.5
C06p29970 Brassica napus HOM05D003499 ORTHO05D004754 0.0e+00 1128.6 1842 43.7
BolC6t38157H Brassica oleracea HOM05D003499 ORTHO05D004754 0.0e+00 1124.4 1866 43.4
Sp5g34360 Schrenkiella parvula HOM05D003499 ORTHO05D004754 0.0e+00 1110.1 2023 42.3
PGR031G3814 Punica granatum HOM05D003499 ORTHO05D004754 0.0e+00 1107.8 1964 41.8
ATR1127G224 Amborella trichopoda HOM05D003499 ORTHO05D004754 0.0e+00 1100.1 1960 41.5
BraA07t30364Z Brassica rapa HOM05D003499 ORTHO05D004754 8.2e-310 1068.1 2165 39.8
BcaC08g45365 Brassica carinata HOM05D003499 ORTHO05D004754 1.8e-304 1050.4 1841 42.0
BcaB02g07209 Brassica carinata HOM05D003499 ORTHO05D004754 5.3e-301 1038.9 1856 41.6
HanXRQChr08g0213121 Helianthus annuus HOM05D003499 ORTHO05D004754 2.3e-296 1023.5 1478 46.7
MELO3C012583.2 Cucumis melo HOM05D003499 ORTHO05D004754 6.1e-289 998.8 1880 40.6
Hma1.2p1_0151F.1_g066930 Hydrangea macrophylla HOM05D003499 ORTHO05D004754 4.7e-273 946.0 990 57.6
Zm00001eb194730 Zea mays HOM05D003499 ORTHO05D004754 6.1e-273 945.7 1969 38.4
MBI02_g17882_MAGBIO Magnolia biondii HOM05D003499 ORTHO05D004754 2.8e-265 920.2 945 57.1
Pp3c8_8020 Physcomitrium patens HOM05D003499 ORTHO05D004754 3.0e-264 916.8 1441 41.4
Os02g0741500 Oryza sativa ssp. japonica HOM05D003499 ORTHO05D004754 4.5e-260 902.9 2034 37.6
AagrBONN_evm.TU.Sc2ySwM_344.3653 Anthoceros agrestis HOM05D003499 ORTHO05D004754 4.3e-258 896.3 1431 40.7
Oeu025989.1 Olea europaea HOM05D003499 ORTHO05D004754 1.6e-257 894.4 1402 47.9
Mapoly0042s0082 Marchantia polymorpha HOM05D003499 ORTHO05D004754 2.3e-248 864.0 1431 39.8
HPP92_017349 Vanilla planifolia HOM05D003499 ORTHO05D004754 7.8e-244 849.0 1237 44.4
AL2G39750 Arabidopsis lyrata HOM05D003499 ORTHO05D004754 8.4e-230 802.4 947 50.9
Solyc06g053570.2 Solanum lycopersicum HOM05D003499 ORTHO05D004754 8.4e-222 775.8 819 55.7
Haze_18466 Corylus avellana HOM05D003499 ORTHO05D004754 6.2e-217 759.6 2098 34.7
SMO203G0250 Selaginella moellendorffii HOM05D003499 ORTHO05D004754 1.6e-212 745.0 2151 31.9
HPP92_017337 Vanilla planifolia HOM05D003499 ORTHO05D004754 1.2e-204 718.8 1039 44.4
SEGI_36052 Sequoiadendron giganteum HOM05D003499 ORTHO05D004754 2.6e-199 701.0 864 47.5
MD10G1218800 Malus domestica HOM05D003499 ORTHO05D004754 4.2e-181 640.6 757 52.6
COL.COLO4_25003 Corchorus olitorius HOM05D003499 ORTHO05D004754 4.4e-178 630.6 2076 32.2
vmacro21306 Vaccinium macrocarpon HOM05D003499 ORTHO05D004754 8.0e-172 609.8 820 49.0
Sabra16G0005400 Salix brachista HOM05D000228 ORTHO05D001122 5.7e-170 603.6 877 47.1
Ca_03377_v3 Cicer arietinum L. HOM05D003499 ORTHO05D004754 8.8e-163 579.7 763 48.2
SEGI_41216 Sequoiadendron giganteum HOM05D003499 ORTHO05D004754 1.2e-162 579.3 841 43.3
Ca_03376_v3 Cicer arietinum L. HOM05D003499 ORTHO05D004754 4.8e-161 573.9 1389 35.8
MD10G1218600 Malus domestica HOM05D003499 ORTHO05D004754 2.5e-157 561.6 547 57.4
CBR_g33916 Chara braunii HOM05D003499 ORTHO05D004754 6.2e-140 503.8 925 39.4
Sabra11G0075400 Salix brachista HOM05D000228 ORTHO05D001122 1.4e-107 396.4 757 39.2
Sabra16G0132400 Salix brachista HOM05D000228 ORTHO05D001122 8.1e-92 344.0 737 37.3
Lj2C7G1 Lonicera japonica HOM05D003499 ORTHO05D004754 3.6e-79 302.0 324 54.0
vmacro21307 Vaccinium macrocarpon HOM05D003499 ORTHO05D004754 2.5e-77 295.8 482 42.9
Mapoly2166s0001 Marchantia polymorpha HOM05D003499 ORTHO05D004754 2.4e-75 289.3 528 37.5
AUR62044736 Chenopodium quinoa HOM05D003499 ORTHO05D004754 9.0e-75 287.3 401 46.1
HPP92_017338 Vanilla planifolia HOM05D003499 ORTHO05D004754 3.9e-70 271.9 335 48.7
Sabra19G0031300 Salix brachista HOM05D000228 ORTHO05D001122 1.5e-69 270.0 326 53.4
Haze_18469 Corylus avellana HOM05D003499 ORTHO05D004754 1.3e-60 240.4 280 53.6
MBI02_g17883_MAGBIO Magnolia biondii HOM05D003499 ORTHO05D004754 1.3e-60 240.4 243 58.0
SEGI_27786 Sequoiadendron giganteum HOM05D003499 ORTHO05D004754 1.7e-60 240.0 1056 28.6
SalBow6G0003 Salvia bowleyana HOM05D003499 ORTHO05D004754 4.5e-58 231.9 185 70.8
SalBow6G2443 Salvia bowleyana HOM05D003499 ORTHO05D004754 5.9e-58 231.5 185 70.8
SalBow6G6137 Salvia bowleyana HOM05D003136 ORTHO05D003562 5.9e-58 231.5 185 70.8
Haze_18467 Corylus avellana HOM05D003499 ORTHO05D004754 1.2e-55 223.8 187 63.6
PRCOL_00003349 Prasinoderma coloniale HOM05D003499 ORTHO05D004754 2.3e-54 219.5 1466 23.9
Sabra19G0031200 Salix brachista HOM05D000228 ORTHO05D001122 4.5e-50 205.3 505 34.5
MCO03G110 Micromonas commoda HOM05D003499 ORTHO05D004754 8.5e-49 201.1 1462 21.5
CBR_g33917 Chara braunii HOM05D003499 ORTHO05D004754 5.5e-48 198.4 388 34.8
SHI33381 Sapria himalayana HOM05D003499 ORTHO05D004754 1.6e-42 180.3 191 52.4
MBI18_g33844_MAGBIO Magnolia biondii HOM05D003499 ORTHO05D004754 1.6e-39 170.2 153 60.1
HanXRQChr11g0329221 Helianthus annuus HOM05D003499 ORTHO05D004754 5.7e-37 161.8 193 48.7
Cpa.g.sc569.2 Carica papaya HOM05D003499 ORTHO05D004754 1.8e-35 156.8 290 40.7
MELO3C000424.2 Cucumis melo HOM05D003499 ORTHO05D004754 9.5e-32 144.4 182 48.9
AL2G39760 Arabidopsis lyrata HOM05D003499 ORTHO05D004754 1.4e-30 140.6 194 45.9
MBI12_g17629_MAGBIO Magnolia biondii HOM05D003499 ORTHO05D004199 5.2e-30 138.7 137 57.7
Lj2A6T29 Lonicera japonica HOM05D003499 ORTHO05D004754 3.4e-29 136.0 735 28.8
CDE05G0263 Ceratophyllum demersum HOM05D003499 ORTHO05D004754 8.3e-28 131.3 111 61.3
MBI07_g23017_MAGBIO Magnolia biondii HOM05D003499 ORTHO05D004754 1.4e-27 130.6 155 51.0
MBI18_g27146_MAGBIO Magnolia biondii HOM05D003499 ORTHO05D004199 1.2e-23 117.5 216 39.4
Rhsim02G0129800 Rhododendron simsii HOM05D003499 ORTHO05D004754 3.6e-23 115.9 238 37.8
Cpa.g.sc31.23 Carica papaya HOM05D003499 ORTHO05D004754 8.9e-22 111.3 112 58.0
Sc21g0005210 Simmondsia chinensis HOM05D003499 ORTHO05D004754 2.9e-20 106.3 103 50.5
Solyc06g053590.4 Solanum lycopersicum HOM05D003499 ORTHO05D004754 8.3e-20 104.8 753 28.4
Cpa.g.c39206 Carica papaya HOM05D003499 ORTHO05D004754 4.1e-19 102.4 82 69.5
SGA_v2.0_scaffold167G38468 Striga asiatica HOM05D003499 ORTHO05D004754 5.4e-19 102.1 75 77.3
SHI33383 Sapria himalayana HOM05D000105 ORTHO05D000023 2.0e-18 100.1 146 46.6
MBI17_g19041_MAGBIO Magnolia biondii HOM05D003499 ORTHO05D004199 4.6e-18 99.0 98 57.1
MBI03_g24553_MAGBIO Magnolia biondii HOM05D003499 ORTHO05D004754 1.5e-16 94.0 92 58.7
MBI14_g41599_MAGBIO Magnolia biondii HOM05D003499 ORTHO05D004754 3.3e-16 92.8 92 56.5
Medtr2g450170 Medicago truncatula HOM05D003499 ORTHO05D004754 1.2e-15 90.9 146 43.2
Rhsim03G0230300 Rhododendron simsii HOM05D000285 ORTHO05D004754 2.8e-15 89.7 254 33.5
Sc15g0004610 Simmondsia chinensis HOM05D000219 ORTHO05D000226 1.1e-14 87.8 84 50.0
MELO3C012602.2 Cucumis melo HOM05D003499 ORTHO05D004754 3.1e-14 86.3 101 49.5
MBI16_g34347_MAGBIO Magnolia biondii HOM05D003499 ORTHO05D004199 1.5e-13 84.0 97 51.5
MBI18_g13000_MAGBIO Magnolia biondii HOM05D003499 ORTHO05D004754 2.0e-13 83.6 184 36.4
Sabra16G0132500 Salix brachista HOM05D000228 ORTHO05D001122 7.5e-13 81.6 82 58.5
MBI10_g08630_MAGBIO Magnolia biondii HOM05D003499 ORTHO05D004199 1.3e-12 80.9 124 46.0
SalBow6G3979 Salvia bowleyana HOM05D003499 ORTHO05D004754 4.9e-12 79.0 77 59.7
arahy.Tifrunner.gnm1.ann1.M9UA6E Arachis hypogaea HOM05D026678 ORTHO05D004754 1.1e-11 77.8 87 50.6
Cpa.g.c34987 Carica papaya HOM05D003499 ORTHO05D004754 5.4e-11 75.5 60 61.7
AL8G20460 Arabidopsis lyrata HOM05D003499 ORTHO05D004754 2.1e-10 73.6 114 43.0
MBI10_g16742_MAGBIO Magnolia biondii HOM05D003499 ORTHO05D004199 4.6e-10 72.4 104 50.0
COL.COLO4_35707 Corchorus olitorius HOM05D003499 ORTHO05D004754 1.0e-09 71.2 164 35.4
Phvul.011G179500 Phaseolus vulgaris HOM05D000631 ORTHO05D011720 1.1e-08 67.8 263 27.4
Glyma.15G214700 Glycine max HOM05D014746 ORTHO05D011720 3.3e-08 66.2 311 27.3
VMungo1127G1758 Vigna mungo HOM05D003499 ORTHO05D011720 3.3e-08 66.2 282 27.0
Medtr8g447290 Medicago truncatula HOM05D014746 ORTHO05D011720 4.3e-08 65.9 229 26.6
MBI02_g18804_MAGBIO Magnolia biondii HOM05D003499 ORTHO05D004199 2.8e-07 63.2 100 44.0
Glyma.08G234500 Glycine max HOM05D003499 ORTHO05D011720 4.7e-07 62.4 324 23.8
MBI02_g41948_MAGBIO Magnolia biondii HOM05D003499 ORTHO05D004199 2.3e-06 60.1 51 64.7


User provided reference genes

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