Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold22G09953 Striga asiatica HOM05D006029 ORTHO05D007439 2.3e-62 241.9 109 100.0
MSTRG.17362 Avicennia marina HOM05D006029 ORTHO05D007439 8.2e-44 180.3 111 68.5
Migut.B01899 Erythranthe guttata HOM05D006029 ORTHO05D007439 1.0e-41 173.3 112 68.8
unitig_60.g25801 Utricularia gibba HOM05D006029 ORTHO05D007439 4.4e-37 157.9 111 60.4
Gohir.D08G145300 Gossypium hirsutum HOM05D006029 ORTHO05D007439 1.7e-33 146.0 111 54.1
Gorai.004G150300 Gossypium raimondii HOM05D006029 ORTHO05D007439 2.2e-33 145.6 111 54.1
Eucgr.E03439 Eucalyptus grandis HOM05D006029 ORTHO05D007439 2.9e-33 145.2 113 57.5
Eucgr.E03441 Eucalyptus grandis HOM05D006029 ORTHO05D007439 2.9e-33 145.2 113 57.5
Eucgr.E03442 Eucalyptus grandis HOM05D006029 ORTHO05D007439 2.9e-33 145.2 113 57.5
Eucgr.L01751 Eucalyptus grandis HOM05D006029 ORTHO05D007439 2.9e-33 145.2 113 57.5
Gohir.A08G124200 Gossypium hirsutum HOM05D006029 ORTHO05D007439 3.8e-33 144.8 111 54.1
Cfa010653 Carpinus fangiana HOM05D006029 ORTHO05D007439 6.5e-33 144.1 113 55.8
COL.COLO4_06245 Corchorus olitorius HOM05D006029 ORTHO05D007439 6.5e-33 144.1 111 53.2
Gohir.D12G270400 Gossypium hirsutum HOM05D006029 ORTHO05D007439 6.5e-33 144.1 111 53.2
Gorai.008G290700 Gossypium raimondii HOM05D006029 ORTHO05D007439 6.5e-33 144.1 111 53.2
Duzib138G0795 Durio zibethinus HOM05D006029 ORTHO05D007439 1.5e-32 142.9 111 54.1
Gohir.A12G269900 Gossypium hirsutum HOM05D006029 ORTHO05D007439 1.9e-32 142.5 113 53.1
CiPaw.02G042300 Carya illinoinensis HOM05D006029 ORTHO05D007439 7.2e-32 140.6 113 54.0
PGR102G2016 Punica granatum HOM05D006029 ORTHO05D007439 1.2e-31 139.8 113 55.8
CANSAT56G3403 Cannabis sativa HOM05D006029 ORTHO05D007439 3.6e-31 138.3 111 59.5
Thecc.01G338500 Theobroma cacao HOM05D006029 ORTHO05D007439 4.7e-31 137.9 113 52.2
HanXRQChr05g0130881 Helianthus annuus HOM05D006029 ORTHO05D007439 6.1e-31 137.5 111 54.1
Lsat_1_v5_gn_4_30800 Lactuca sativa HOM05D006029 ORTHO05D007439 8.0e-31 137.1 111 55.0
Oeu043218.1 Olea europaea HOM05D006029 ORTHO05D007439 1.0e-30 136.7 113 54.0
Phvul.008G101000 Phaseolus vulgaris HOM05D006029 ORTHO05D007439 1.4e-30 136.3 113 56.6
arahy.Tifrunner.gnm1.ann1.A8XVJK Arachis hypogaea HOM05D006029 ORTHO05D007439 1.8e-30 136.0 113 55.8
arahy.Tifrunner.gnm1.ann1.ZU3BRN Arachis hypogaea HOM05D006029 ORTHO05D007439 1.8e-30 136.0 113 55.8
Haze_03591 Corylus avellana HOM05D004263 ORTHO05D004931 2.3e-30 135.6 98 60.2
Glyma.18G179600 Glycine max HOM05D006029 ORTHO05D007439 2.3e-30 135.6 113 54.9
Ciclev10022957m.g Citrus clementina HOM05D006029 ORTHO05D007439 4.0e-30 134.8 111 56.8
Glyma.07G131200 Glycine max HOM05D006029 ORTHO05D007439 4.0e-30 134.8 113 54.9
Cc06_g21100 Coffea canephora HOM05D006029 ORTHO05D007439 8.8e-30 133.7 111 52.3
TWI36G0126 Tripterygium wilfordii HOM05D006029 ORTHO05D007439 2.0e-29 132.5 113 53.1
Lalb_Chr04g0261421 Lupinus albus HOM05D006029 ORTHO05D007439 2.6e-29 132.1 113 54.0
Cc00_g02440 Coffea canephora HOM05D006029 ORTHO05D007439 5.7e-29 131.0 111 51.4
Peaxi162Scf00156g00617 Petunia axillaris HOM05D006029 ORTHO05D007439 9.8e-29 130.2 113 51.3
Solyc05g055890.3 Solanum lycopersicum HOM05D006029 ORTHO05D007439 9.8e-29 130.2 113 52.2
Sopen05g034290 Solanum pennellii HOM05D006029 ORTHO05D007439 9.8e-29 130.2 113 52.2
vmacro12594 Vaccinium macrocarpon HOM05D006029 ORTHO05D007439 9.8e-29 130.2 113 53.1
Sed0019070 Sechium edule HOM05D006029 ORTHO05D007439 1.3e-28 129.8 113 52.2
ClCG10G013250 Citrullus lanatus HOM05D006029 ORTHO05D007439 2.2e-28 129.0 113 53.1
Peaxi162Scf00740g00556 Petunia axillaris HOM05D006029 ORTHO05D007439 2.8e-28 128.6 100 55.0
PGSC0003DMG402023468 Solanum tuberosum HOM05D006029 ORTHO05D007439 2.8e-28 128.6 113 51.3
Rhsim01G0175700 Rhododendron simsii HOM05D006029 ORTHO05D007439 3.7e-28 128.3 113 52.2
GSVIVG01027190001 Vitis vinifera HOM05D006029 ORTHO05D007439 3.7e-28 128.3 113 53.1
MELO3C026899.2 Cucumis melo HOM05D006029 ORTHO05D007439 8.3e-28 127.1 113 52.2
CsaV3_3G043380 Cucumis sativus L. HOM05D006029 ORTHO05D007439 8.3e-28 127.1 113 52.2
CAN.G694.9 Capsicum annuum HOM05D006029 ORTHO05D007439 1.1e-27 126.7 113 51.3
Psat3g005240 Pisum sativum HOM05D006029 ORTHO05D007439 1.4e-27 126.3 113 52.2
Manes.01G243500 Manihot esculenta HOM05D006029 ORTHO05D007439 9.1e-27 123.6 113 48.7
Lj1g0014790 Lotus japonicus HOM05D006029 ORTHO05D007439 1.2e-26 123.2 113 52.2
Lj1g0022243 Lotus japonicus HOM05D006029 ORTHO05D007439 1.2e-26 123.2 113 52.2
TAR374G1259 Trochodendron aralioides HOM05D006029 ORTHO05D007439 1.2e-26 123.2 113 53.1
PSO170G0977 Papaver somniferum HOM05D006029 ORTHO05D007439 4.5e-26 121.3 111 50.5
DCAR_006981 Daucus carota HOM05D006425 ORTHO05D007312 5.9e-26 120.9 113 48.7
TPR.G4810 Trifolium pratense HOM05D006029 ORTHO05D007439 7.7e-26 120.6 111 55.0
HanXRQChr17g0563271 Helianthus annuus HOM05D006029 ORTHO05D007439 2.9e-25 118.6 102 52.0
Sed0007850 Sechium edule HOM05D006029 ORTHO05D007439 2.9e-25 118.6 113 49.6
Hma1.2p1_1482F.1_g286210 Hydrangea macrophylla HOM05D006029 ORTHO05D007439 3.8e-25 118.2 113 46.9
PSO782G1905 Papaver somniferum HOM05D006029 ORTHO05D007439 3.8e-25 118.2 111 48.6
PSO782G2649 Papaver somniferum HOM05D006029 ORTHO05D007439 3.8e-25 118.2 111 48.6
PSO782G4464 Papaver somniferum HOM05D006029 ORTHO05D007439 3.8e-25 118.2 111 48.6
HPP92_017871 Vanilla planifolia HOM05D006029 ORTHO05D007439 3.8e-25 118.2 111 47.7
Medtr7g116750 Medicago truncatula HOM05D006029 ORTHO05D007439 5.0e-25 117.9 118 49.2
Medtr5g030180 Medicago truncatula HOM05D006029 ORTHO05D007439 1.1e-24 116.7 115 49.6
Aqoxy4G03109 Aquilegia oxysepala HOM05D006029 ORTHO05D007439 2.5e-24 115.5 109 45.0
Os02g0672700 Oryza sativa ssp. japonica HOM05D006029 ORTHO05D007439 4.2e-24 114.8 111 46.8
MD01G1085300 Malus domestica HOM05D006029 ORTHO05D007439 2.1e-23 112.5 109 54.1
Haze_15690 Corylus avellana HOM05D006029 ORTHO05D007439 2.8e-23 112.1 94 54.3
Pp3c15_5550 Physcomitrium patens HOM05D006029 ORTHO05D007439 2.8e-23 112.1 112 46.4
Nn1g00349 Nelumbo nucifera HOM05D006029 ORTHO05D007439 3.6e-23 111.7 113 46.9
Zm00001eb187060 Zea mays HOM05D006029 ORTHO05D007439 3.6e-23 111.7 111 45.9
Sabra12G0016400 Salix brachista HOM05D006029 ORTHO05D007439 6.1e-23 110.9 113 44.2
Sc02g0002910 Simmondsia chinensis HOM05D006029 ORTHO05D007439 6.1e-23 110.9 113 43.4
Potri.012G015900 Populus trichocarpa HOM05D006029 ORTHO05D007439 8.0e-23 110.5 113 44.2
Lsat_1_v5_gn_6_63820 Lactuca sativa HOM05D006029 ORTHO05D007439 1.4e-22 109.8 135 43.0
Lsat_1_v5_gn_7_7741 Lactuca sativa HOM05D006029 ORTHO05D007439 5.2e-22 107.8 111 47.7
AT4G07950 Arabidopsis thaliana HOM05D006029 ORTHO05D007439 6.8e-22 107.5 111 45.9
FvH4_7g17060 Fragaria vesca HOM05D006029 ORTHO05D007439 6.8e-22 107.5 109 50.5
FAN01G1288 Fragaria x ananassa HOM05D006029 ORTHO05D007439 6.8e-22 107.5 109 50.5
FAN03G2913 Fragaria x ananassa HOM05D006029 ORTHO05D007439 6.8e-22 107.5 109 50.5
FAN06G2526 Fragaria x ananassa HOM05D006029 ORTHO05D007439 6.8e-22 107.5 109 50.5
FAN06G3186 Fragaria x ananassa HOM05D006029 ORTHO05D007439 6.8e-22 107.5 109 50.5
FAN10G2808 Fragaria x ananassa HOM05D006029 ORTHO05D007439 6.8e-22 107.5 109 50.5
FAN10G3748 Fragaria x ananassa HOM05D006029 ORTHO05D007439 6.8e-22 107.5 109 50.5
Cre02.g102400 Chlamydomonas reinhardtii HOM05D006029 ORTHO05D007439 1.2e-21 106.7 108 42.6
Lj3g0023283 Lotus japonicus HOM05D006029 ORTHO05D007439 1.5e-21 106.3 111 45.9
AL1G11270 Arabidopsis lyrata HOM05D006029 ORTHO05D007439 2.0e-21 105.9 111 46.8
EL10Ac5g10924 Beta vulgaris HOM05D006029 ORTHO05D007439 2.0e-21 105.9 113 47.8
RcHm_v2.0_Chr1g0360471 Rosa chinensis HOM05D006029 ORTHO05D007439 2.6e-21 105.5 109 49.5
THA.LOC104815886 Tarenaya hassleriana HOM05D006029 ORTHO05D007439 3.4e-21 105.1 111 45.0
BcaC07g42429 Brassica carinata HOM05D006029 ORTHO05D007439 4.4e-21 104.8 111 45.0
A03p11160 Brassica napus HOM05D000069 ORTHO05D021930 4.4e-21 104.8 111 45.0
A09p39050 Brassica napus HOM05D006029 ORTHO05D007439 4.4e-21 104.8 111 45.0
A09p68990 Brassica napus HOM05D006029 ORTHO05D007439 4.4e-21 104.8 111 45.0
BolC3t13750H Brassica oleracea HOM05D006029 ORTHO05D007439 4.4e-21 104.8 111 45.0
BolC8t52870H Brassica oleracea HOM05D006029 ORTHO05D007439 4.4e-21 104.8 111 45.0
BraA03t10431Z Brassica rapa HOM05D006029 ORTHO05D007439 4.4e-21 104.8 111 45.0
BraA09t42236Z Brassica rapa HOM05D006029 ORTHO05D007439 4.4e-21 104.8 111 45.0
AagrBONN_evm.TU.Sc2ySwM_117.3630 Anthoceros agrestis HOM05D006029 ORTHO05D007439 5.7e-21 104.4 112 42.0
BraA09t39405Z Brassica rapa HOM05D006029 ORTHO05D007439 5.7e-21 104.4 111 45.0
Prupe.2G192900 Prunus persica HOM05D006029 ORTHO05D007439 5.7e-21 104.4 109 50.5
CSS0011460 Camellia sinensis var. sinensis HOM05D006029 ORTHO05D007439 1.3e-20 103.2 96 52.1
Hund17067 Selenicereus undatus HOM05D006029 ORTHO05D007439 1.3e-20 103.2 113 46.0
Carub.0003s3000 Capsella rubella HOM05D006029 ORTHO05D007439 1.7e-20 102.8 111 45.0
CARHR001260 Cardamine hirsuta HOM05D006029 ORTHO05D007439 1.7e-20 102.8 111 45.0
AT1G01210 Arabidopsis thaliana HOM05D006029 ORTHO05D007439 3.7e-20 101.7 111 44.1
C03p12870 Brassica napus HOM05D006029 ORTHO05D007439 3.7e-20 101.7 111 44.1
Thhalv10009170m.g Eutrema salsugineum HOM05D006029 ORTHO05D007439 3.7e-20 101.7 111 43.2
Nitab4.5_0000476g0280 Nicotiana tabacum HOM05D006029 ORTHO05D007439 8.3e-20 100.5 86 50.0
Sp1g01080 Schrenkiella parvula HOM05D006029 ORTHO05D007439 1.8e-19 99.4 111 45.0
ATR0751G147 Amborella trichopoda HOM05D006029 ORTHO05D007439 4.1e-19 98.2 111 42.3
MCO11G240 Micromonas commoda HOM05D006029 ORTHO05D007439 7.0e-19 97.4 110 39.1
Aa31LG1G10580 Aethionema arabicum HOM05D006029 ORTHO05D007439 2.0e-18 95.9 111 41.4
Cpa.g.sc96.66 Carica papaya HOM05D006029 ORTHO05D007439 5.9e-18 94.4 113 42.5
QL08p046069 Quercus lobata HOM05D006029 ORTHO05D007439 1.7e-17 92.8 69 56.5
Mapoly0101s0063 Marchantia polymorpha HOM05D006029 ORTHO05D007439 8.6e-17 90.5 112 38.4
SMO159G0009 Selaginella moellendorffii HOM05D006029 ORTHO05D007439 8.6e-17 90.5 111 40.5
CBR_g49523 Chara braunii HOM05D006029 ORTHO05D007439 8.0e-15 84.0 90 40.0
Nitab4.5_0009816g0020 Nicotiana tabacum HOM05D006029 ORTHO05D007439 4.4e-13 78.2 71 45.1
PRCOL_00000799 Prasinoderma coloniale HOM05D006029 ORTHO05D007439 5.8e-13 77.8 90 42.2
Lsat_1_v5_gn_6_81300 Lactuca sativa HOM05D006029 ORTHO05D007439 1.7e-12 76.3 65 47.7
Atru.chr5.715 Acer truncatum HOM05D006029 ORTHO05D007439 3.7e-12 75.1 79 48.1
Cc08_g08090 Coffea canephora HOM05D006029 ORTHO05D007439 6.4e-12 74.3 55 56.4
vmacro23448 Vaccinium macrocarpon HOM05D006029 ORTHO05D007439 3.2e-11 72.0 83 45.8
FvH4_1g24780 Fragaria vesca HOM05D005168 ORTHO05D006358 4.1e-11 71.6 113 34.5
Rhsim07G0002100 Rhododendron simsii HOM05D006029 ORTHO05D007439 7.0e-11 70.9 74 48.6
SMO347G0197 Selaginella moellendorffii HOM05D006029 ORTHO05D007439 7.0e-11 70.9 112 38.4
Dinv34229 Davidia involucrata HOM05D006425 ORTHO05D007312 9.2e-11 70.5 71 46.5
FAN23G3095 Fragaria x ananassa HOM05D005168 ORTHO05D006358 2.0e-10 69.3 113 33.6
RcHm_v2.0_Chr2g0124111 Rosa chinensis HOM05D005168 ORTHO05D006358 6.0e-10 67.8 113 33.6
Medtr3g102420 Medicago truncatula HOM05D005168 ORTHO05D006358 1.0e-09 67.0 113 37.2
CAN.G727.4 Capsicum annuum HOM05D005168 ORTHO05D006358 3.9e-09 65.1 115 36.5
Carub.0003s3001 Capsella rubella HOM05D003869 ORTHO05D004718 6.6e-09 64.3 65 44.6
Peaxi162Scf00553g00216 Petunia axillaris HOM05D005168 ORTHO05D006358 1.5e-08 63.2 115 34.8
CANSAT11G0916 Cannabis sativa HOM05D005168 ORTHO05D006358 1.9e-08 62.8 118 34.7
Ca_00384_v3 Cicer arietinum L. HOM05D005168 ORTHO05D006358 1.9e-08 62.8 113 36.3
Cc10_g01450 Coffea canephora HOM05D005168 ORTHO05D006358 1.9e-08 62.8 115 33.9
Lj1g0018211 Lotus japonicus HOM05D005168 ORTHO05D006358 3.3e-08 62.0 112 34.8
MD08G1010500 Malus domestica HOM05D005168 ORTHO05D006358 3.3e-08 62.0 113 32.7
CBR_g31408 Chara braunii HOM05D006029 ORTHO05D007439 4.3e-08 61.6 74 37.8
arahy.Tifrunner.gnm1.ann1.TKX6L5 Arachis hypogaea HOM05D005168 ORTHO05D006358 5.6e-08 61.2 113 36.3
Ca_09543_v3 Cicer arietinum L. HOM05D006029 ORTHO05D007439 5.6e-08 61.2 62 48.4
Haze_17776 Corylus avellana HOM05D005168 ORTHO05D006358 7.3e-08 60.8 113 33.6
Haze_22662 Corylus avellana HOM05D005168 ORTHO05D006358 7.3e-08 60.8 113 33.6
Cfa012889 Carpinus fangiana HOM05D005168 ORTHO05D006358 9.5e-08 60.5 113 33.6
Os03g0711700 Oryza sativa ssp. japonica HOM05D005168 ORTHO05D006358 9.5e-08 60.5 120 30.8
Psat5g045240 Pisum sativum HOM05D005168 ORTHO05D006358 9.5e-08 60.5 113 35.4
CiPaw.07G147200 Carya illinoinensis HOM05D005168 ORTHO05D006358 1.2e-07 60.1 113 33.6
Glyma.03G178900 Glycine max HOM05D005168 ORTHO05D006358 1.2e-07 60.1 113 33.6
QL01p031168 Quercus lobata HOM05D005168 ORTHO05D006358 1.6e-07 59.7 112 31.2
Zm00001eb054840 Zea mays HOM05D005168 ORTHO05D006358 2.1e-07 59.3 111 30.6
Prupe.6G147400 Prunus persica HOM05D005168 ORTHO05D006358 2.8e-07 58.9 113 31.0
Solyc04g054510.4 Solanum lycopersicum HOM05D005168 ORTHO05D006358 3.6e-07 58.5 115 33.9
PGSC0003DMG400022038 Solanum tuberosum HOM05D005168 ORTHO05D006358 3.6e-07 58.5 115 33.9
VMungo1080G1160 Vigna mungo HOM05D005168 ORTHO05D006358 3.6e-07 58.5 112 33.0
Eucgr.H00960 Eucalyptus grandis HOM05D005168 ORTHO05D006358 6.2e-07 57.8 114 34.2
Nitab4.5_0003251g0060 Nicotiana tabacum HOM05D005168 ORTHO05D006358 6.2e-07 57.8 116 33.6
PGR031G0142 Punica granatum HOM05D005168 ORTHO05D006358 6.2e-07 57.8 114 35.1
Duzib093G1099 Durio zibethinus HOM05D005168 ORTHO05D006358 8.0e-07 57.4 121 31.4
Actinidia37940 Actinidia chinensis HOM05D005168 ORTHO05D006358 1.1e-06 57.0 119 31.9
arahy.Tifrunner.gnm1.ann1.GU7A1M Arachis hypogaea HOM05D005168 ORTHO05D006358 1.1e-06 57.0 113 33.6
CSS0004439 Camellia sinensis var. sinensis HOM05D005168 ORTHO05D006358 1.1e-06 57.0 119 30.3
Nn3g19859 Nelumbo nucifera HOM05D005168 ORTHO05D006358 1.1e-06 57.0 119 29.4
Phvul.001G175600 Phaseolus vulgaris HOM05D005168 ORTHO05D006358 1.1e-06 57.0 112 33.9
DCAR_015742 Daucus carota HOM05D005168 ORTHO05D006358 1.4e-06 56.6 115 33.0
Nitab4.5_0000337g0010 Nicotiana tabacum HOM05D005168 ORTHO05D006358 1.4e-06 56.6 116 33.6
SMO351G0141 Selaginella moellendorffii HOM05D005168 ORTHO05D006358 1.4e-06 56.6 111 31.5
CDE11G0347 Ceratophyllum demersum HOM05D005168 ORTHO05D006358 1.8e-06 56.2 119 31.9
FAN26G0870 Fragaria x ananassa HOM05D005168 ORTHO05D006358 2.3e-06 55.8 54 44.4
CSS0038486 Camellia sinensis var. sinensis HOM05D005168 ORTHO05D006358 3.1e-06 55.5 119 30.3
Lalb_Chr11g0067001 Lupinus albus HOM05D005168 ORTHO05D006358 3.1e-06 55.5 113 32.7
Cc02_g05240 Coffea canephora HOM05D002276 ORTHO05D002381 5.2e-06 54.7 67 38.8
SGA_v2.0_scaffold47G17500 Striga asiatica HOM05D005168 ORTHO05D006358 5.2e-06 54.7 115 32.2
SGA_v2.0_scaffold19G08553 Striga asiatica HOM05D005168 ORTHO05D006358 6.8e-06 54.3 115 32.2
CBR_g23850 Chara braunii HOM05D005168 ORTHO05D006358 8.9e-06 53.9 53 45.3
COL.COLO4_19469 Corchorus olitorius HOM05D002276 ORTHO05D002381 8.9e-06 53.9 42 50.0
Rhsim07G0250400 Rhododendron simsii HOM05D005168 ORTHO05D006358 8.9e-06 53.9 106 31.1
SalBow8G1113 Salvia bowleyana HOM05D005168 ORTHO05D006358 8.9e-06 53.9 117 32.5
TAR622G0958 Trochodendron aralioides HOM05D005168 ORTHO05D006358 8.9e-06 53.9 119 31.1


User provided reference genes

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