Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold227G43149 Striga asiatica HOM05D001165 ORTHO05D051406 3.3e-92 341.7 168 100.0
SGA_v2.0_scaffold25G10997 Striga asiatica HOM05D001165 ORTHO05D051406 3.5e-33 145.6 183 49.2
SGA_v2.0_scaffold95G28781 Striga asiatica HOM05D001165 ORTHO05D001347 2.4e-18 96.3 56 87.5
SGA_v2.0_scaffold4G02239 Striga asiatica HOM05D001165 ORTHO05D001347 5.6e-15 85.1 54 72.2
MSTRG.18856 Avicennia marina HOM05D001165 ORTHO05D001347 7.3e-15 84.7 56 75.0
Migut.D02536 Erythranthe guttata HOM05D001165 ORTHO05D001347 8.0e-14 81.3 53 71.7
Oeu029377.1 Olea europaea HOM05D001165 ORTHO05D001347 5.7e-12 75.1 50 72.0
Oeu053764.1 Olea europaea HOM05D001165 ORTHO05D001347 1.7e-11 73.6 53 67.9
TPR.G32699 Trifolium pratense HOM05D001165 ORTHO05D001347 2.9e-11 72.8 55 61.8
TPR.G37261 Trifolium pratense HOM05D001165 ORTHO05D001347 6.4e-11 71.6 45 71.1
Sopen01g002100 Solanum pennellii HOM05D001165 ORTHO05D001347 8.3e-11 71.2 49 71.4
Nitab4.5_0001620g0010 Nicotiana tabacum HOM05D001165 ORTHO05D001347 1.4e-10 70.5 49 69.4
Solyc01g006100.4 Solanum lycopersicum HOM05D001165 ORTHO05D001347 1.8e-10 70.1 49 69.4
Medtr5g066780 Medicago truncatula HOM05D001165 ORTHO05D001347 2.4e-10 69.7 51 66.7
Medtr5g066830 Medicago truncatula HOM05D001165 ORTHO05D001347 2.4e-10 69.7 51 66.7
CAN.G140.16 Capsicum annuum HOM05D001165 ORTHO05D001347 3.2e-10 69.3 51 64.7
Peaxi162Scf00441g00015 Petunia axillaris HOM05D001165 ORTHO05D001347 3.2e-10 69.3 49 67.3
Lj6C822T7 Lonicera japonica HOM05D001165 ORTHO05D001347 5.4e-10 68.6 48 68.8
Ca_25573_v3 Cicer arietinum L. HOM05D001165 ORTHO05D001347 9.2e-10 67.8 51 64.7
Cc01_g01020 Coffea canephora HOM05D001165 ORTHO05D001347 9.2e-10 67.8 51 64.7
Nitab4.5_0005477g0020 Nicotiana tabacum HOM05D001165 ORTHO05D001347 9.2e-10 67.8 49 67.3
Oeu023940.1 Olea europaea HOM05D001165 ORTHO05D001347 9.2e-10 67.8 54 57.4
Solyc12g100330.2 Solanum lycopersicum HOM05D001165 ORTHO05D001347 9.2e-10 67.8 46 69.6
PGSC0003DMG400004285 Solanum tuberosum HOM05D001165 ORTHO05D001347 1.2e-09 67.4 42 73.8
Hma1.2p1_1813F.1_g303890 Hydrangea macrophylla HOM05D001165 ORTHO05D001347 2.0e-09 66.6 50 64.0
ECA246G0530 Erigeron canadensis HOM05D001165 ORTHO05D001347 3.5e-09 65.9 55 54.5
Lj1C16T19 Lonicera japonica HOM05D001165 ORTHO05D001347 3.5e-09 65.9 51 64.7
CAN.G575.11 Capsicum annuum HOM05D001165 ORTHO05D001347 5.9e-09 65.1 42 69.0
HanXRQChr17g0543611 Helianthus annuus HOM05D001165 ORTHO05D001347 7.8e-09 64.7 55 52.7
unitig_899.g15024 Utricularia gibba HOM05D001165 ORTHO05D001347 7.8e-09 64.7 44 70.5
Lj4g0017684 Lotus japonicus HOM05D001165 ORTHO05D001347 1.0e-08 64.3 44 65.9
arahy.Tifrunner.gnm1.ann1.FW39NC Arachis hypogaea HOM05D001165 ORTHO05D001347 1.3e-08 63.9 51 58.8
vmacro10103 Vaccinium macrocarpon HOM05D001165 ORTHO05D001347 1.3e-08 63.9 63 49.2
arahy.Tifrunner.gnm1.ann1.IN8D84 Arachis hypogaea HOM05D001165 ORTHO05D001347 1.7e-08 63.5 51 56.9
Lj2g0012913 Lotus japonicus HOM05D001165 ORTHO05D001347 1.7e-08 63.5 49 59.2
Medtr6g088740 Medicago truncatula HOM05D001165 ORTHO05D001347 3.0e-08 62.8 44 59.1
Peaxi162Scf00062g00201 Petunia axillaris HOM05D001165 ORTHO05D001347 3.0e-08 62.8 42 71.4
Hund21648 Selenicereus undatus HOM05D001165 ORTHO05D001347 3.0e-08 62.8 49 63.3
VMungo0464G1904 Vigna mungo HOM05D001165 ORTHO05D001347 3.9e-08 62.4 53 58.5
Nn2g15742 Nelumbo nucifera HOM05D001165 ORTHO05D001347 5.0e-08 62.0 53 62.3
ClCG03G013970 Citrullus lanatus HOM05D001165 ORTHO05D001347 6.6e-08 61.6 42 64.3
Nitab4.5_0004389g0060 Nicotiana tabacum HOM05D001165 ORTHO05D001347 6.6e-08 61.6 42 69.0
Sabra01G0007500 Salix brachista HOM05D001165 ORTHO05D001347 6.6e-08 61.6 49 57.1
CSS0034027 Camellia sinensis var. sinensis HOM05D001165 ORTHO05D001347 8.6e-08 61.2 53 56.6
CSS0038763 Camellia sinensis var. sinensis HOM05D001165 ORTHO05D001347 8.6e-08 61.2 53 56.6
COL.COLO4_14287 Corchorus olitorius HOM05D001165 ORTHO05D001347 8.6e-08 61.2 42 69.0
Lsat_1_v5_gn_4_68381 Lactuca sativa HOM05D001165 ORTHO05D001347 8.6e-08 61.2 55 50.9
Medtr6g088715 Medicago truncatula HOM05D001165 ORTHO05D001347 8.6e-08 61.2 42 69.0
Phvul.004G176100 Phaseolus vulgaris HOM05D001165 ORTHO05D001347 8.6e-08 61.2 53 58.5
Sed0019999 Sechium edule HOM05D001165 ORTHO05D001347 8.6e-08 61.2 55 52.7
TPR.G19244 Trifolium pratense HOM05D001165 ORTHO05D001347 8.6e-08 61.2 42 71.4
TPR.G25144 Trifolium pratense HOM05D001165 ORTHO05D001347 8.6e-08 61.2 42 71.4
CDE05G1370 Ceratophyllum demersum HOM05D001165 ORTHO05D001347 1.1e-07 60.8 42 66.7
COL.COLO4_10748 Corchorus olitorius HOM05D001165 ORTHO05D001347 1.1e-07 60.8 42 66.7
Rhsim05G0215600 Rhododendron simsii HOM05D001165 ORTHO05D001347 1.1e-07 60.8 53 56.6
Atru.chr3.2208 Acer truncatum HOM05D001165 ORTHO05D001347 1.5e-07 60.5 46 63.0
ATR0829G097 Amborella trichopoda HOM05D001165 ORTHO05D001347 1.5e-07 60.5 43 62.8
HanXRQChr15g0479131 Helianthus annuus HOM05D001165 ORTHO05D001347 1.5e-07 60.5 42 64.3
Potri.001G009600 Populus trichocarpa HOM05D001165 ORTHO05D001347 1.5e-07 60.5 49 55.1
Cpa.g.sc48.148 Carica papaya HOM05D001165 ORTHO05D001347 1.9e-07 60.1 45 57.8
CsaV3_1G042250 Cucumis sativus L. HOM05D001165 ORTHO05D001347 1.9e-07 60.1 42 64.3
Medtr4g017850 Medicago truncatula HOM05D001165 ORTHO05D001347 1.9e-07 60.1 52 57.7
RcHm_v2.0_Chr4g0398431 Rosa chinensis HOM05D001165 ORTHO05D001347 1.9e-07 60.1 42 61.9
Duzib068G0158 Durio zibethinus HOM05D001165 ORTHO05D001347 2.5e-07 59.7 46 58.7
Manes.03G089100 Manihot esculenta HOM05D001165 ORTHO05D001347 2.5e-07 59.7 50 60.0
EL10Ac4g10341 Beta vulgaris HOM05D001165 ORTHO05D001347 3.3e-07 59.3 54 59.3
Glyma.01G007800 Glycine max HOM05D001165 ORTHO05D001347 3.3e-07 59.3 53 56.6
Lj5g0010349 Lotus japonicus HOM05D001165 ORTHO05D001347 3.3e-07 59.3 43 65.1
Lalb_Chr24g0397301 Lupinus albus HOM05D001165 ORTHO05D001347 3.3e-07 59.3 53 54.7
MD03G1011100 Malus domestica HOM05D001165 ORTHO05D001347 3.3e-07 59.3 46 58.7
Medtr5g023660 Medicago truncatula HOM05D001165 ORTHO05D001347 3.3e-07 59.3 42 69.0
Medtr7g007090 Medicago truncatula HOM05D001165 ORTHO05D001347 3.3e-07 59.3 52 59.6
CDE05G0420 Ceratophyllum demersum HOM05D001165 ORTHO05D001347 4.3e-07 58.9 42 64.3
Lj5g0018302 Lotus japonicus HOM05D001165 ORTHO05D001347 4.3e-07 58.9 43 65.1
Lj5g0026814 Lotus japonicus HOM05D001165 ORTHO05D001347 4.3e-07 58.9 43 65.1
Prupe.6G011600 Prunus persica HOM05D001165 ORTHO05D001347 4.3e-07 58.9 45 57.8
CiPaw.11G101500 Carya illinoinensis HOM05D001165 ORTHO05D001347 5.6e-07 58.5 41 65.9
AUR62019205 Chenopodium quinoa HOM05D001165 ORTHO05D001347 5.6e-07 58.5 54 59.3
MD11G1012800 Malus domestica HOM05D001165 ORTHO05D001347 5.6e-07 58.5 46 56.5
Prupe.5G024100 Prunus persica HOM05D001165 ORTHO05D001347 5.6e-07 58.5 41 68.3
Sed0004362 Sechium edule HOM05D001165 ORTHO05D001347 5.6e-07 58.5 42 59.5
AL2G28960 Arabidopsis lyrata HOM05D001165 ORTHO05D001347 7.3e-07 58.2 51 58.8
Ciclev10014232m.g Citrus clementina HOM05D001165 ORTHO05D001347 7.3e-07 58.2 51 54.9
Medtr6g084890 Medicago truncatula HOM05D001165 ORTHO05D001347 7.3e-07 58.2 42 69.0
TPR.G25460 Trifolium pratense HOM05D001165 ORTHO05D001347 7.3e-07 58.2 45 60.0
arahy.Tifrunner.gnm1.ann1.QU6E8I Arachis hypogaea HOM05D001165 ORTHO05D001347 9.5e-07 57.8 42 66.7
arahy.Tifrunner.gnm1.ann1.VQI5ED Arachis hypogaea HOM05D001165 ORTHO05D001347 9.5e-07 57.8 42 66.7
Gorai.002G216500 Gossypium raimondii HOM05D001165 ORTHO05D001347 9.5e-07 57.8 42 66.7
Medtr6g037900 Medicago truncatula HOM05D001165 ORTHO05D001347 9.5e-07 57.8 42 69.0
PSO384G3590 Papaver somniferum HOM05D001165 ORTHO05D001347 9.5e-07 57.8 44 54.5
Psat2g130080 Pisum sativum HOM05D001165 ORTHO05D001347 9.5e-07 57.8 42 66.7
Actinidia06857 Actinidia chinensis HOM05D001165 ORTHO05D001347 1.2e-06 57.4 42 61.9
COL.COLO4_10449 Corchorus olitorius HOM05D001165 ORTHO05D001347 1.2e-06 57.4 44 61.4
FvH4_2g39560 Fragaria vesca HOM05D001165 ORTHO05D001347 1.2e-06 57.4 43 65.1
Glyma.01G160300 Glycine max HOM05D001165 ORTHO05D001347 1.2e-06 57.4 42 66.7
Actinidia16271 Actinidia chinensis HOM05D001165 ORTHO05D001347 1.6e-06 57.0 51 54.9
Ah.06g193090 Amaranthus hybridus HOM05D001165 ORTHO05D001347 1.6e-06 57.0 52 55.8
ECA246G0767 Erigeron canadensis HOM05D001165 ORTHO05D001347 1.6e-06 57.0 55 49.1
RcHm_v2.0_Chr4g0444071 Rosa chinensis HOM05D001165 ORTHO05D001347 1.6e-06 57.0 53 54.7
Thecc.09G214800 Theobroma cacao HOM05D001165 ORTHO05D001347 1.6e-06 57.0 42 61.9
GSVIVG01025386001 Vitis vinifera HOM05D001165 ORTHO05D001347 1.6e-06 57.0 42 61.9
CSS0034841 Camellia sinensis var. sinensis HOM05D001165 ORTHO05D001347 2.1e-06 56.6 41 63.4
Lj3C889G12 Lonicera japonica HOM05D001165 ORTHO05D001347 2.1e-06 56.6 41 63.4
SalBow4G2525 Salvia bowleyana HOM05D001165 ORTHO05D001347 2.1e-06 56.6 41 61.0
VMungo1215G1000 Vigna mungo HOM05D001165 ORTHO05D001347 2.1e-06 56.6 42 61.9
Aqoxy1G04166 Aquilegia oxysepala HOM05D001165 ORTHO05D001347 2.8e-06 56.2 47 55.3
AT1G69770 Arabidopsis thaliana HOM05D001165 ORTHO05D001347 2.8e-06 56.2 51 58.8
Dinv13422 Davidia involucrata HOM05D001165 ORTHO05D001347 2.8e-06 56.2 38 76.3
Dinv15838 Davidia involucrata HOM05D001165 ORTHO05D001347 2.8e-06 56.2 41 65.9
FAN20G2960 Fragaria x ananassa HOM05D001165 ORTHO05D001347 2.8e-06 56.2 43 65.1
Gohir.A01G183300 Gossypium hirsutum HOM05D001165 ORTHO05D001347 2.8e-06 56.2 42 64.3
Gohir.D01G174400 Gossypium hirsutum HOM05D001165 ORTHO05D001347 2.8e-06 56.2 42 64.3
MBI13_g42370_MAGBIO Magnolia biondii HOM05D001165 ORTHO05D001347 2.8e-06 56.2 56 51.8
Duzib205G0564 Durio zibethinus HOM05D001165 ORTHO05D001347 3.6e-06 55.8 46 58.7
ECA247G0380 Erigeron canadensis HOM05D001165 ORTHO05D001347 3.6e-06 55.8 51 49.0
CSS0003392 Camellia sinensis var. sinensis HOM05D001165 ORTHO05D001347 4.7e-06 55.5 41 56.1
AUR62000035 Chenopodium quinoa HOM05D001165 ORTHO05D001347 4.7e-06 55.5 54 57.4
FvH4_5g23610 Fragaria vesca HOM05D001165 ORTHO05D001347 4.7e-06 55.5 41 63.4
FAN08G2742 Fragaria x ananassa HOM05D001165 ORTHO05D001347 4.7e-06 55.5 41 63.4
FAN13G1022 Fragaria x ananassa HOM05D001165 ORTHO05D001347 4.7e-06 55.5 41 63.4
Lalb_Chr09g0321331 Lupinus albus HOM05D001165 ORTHO05D001347 4.7e-06 55.5 42 61.9
QL12p000477 Quercus lobata HOM05D001165 ORTHO05D001347 4.7e-06 55.5 41 61.0
Ca_24958_v3 Cicer arietinum L. HOM05D001165 ORTHO05D001347 6.2e-06 55.1 42 61.9
Cc08_g04280 Coffea canephora HOM05D001165 ORTHO05D001347 6.2e-06 55.1 54 40.7
COL.COLO4_16882 Corchorus olitorius HOM05D001165 ORTHO05D001347 6.2e-06 55.1 47 53.2
MELO3C015649.2 Cucumis melo HOM05D001165 ORTHO05D001347 6.2e-06 55.1 39 66.7
Dinv17266 Davidia involucrata HOM05D001165 ORTHO05D001347 6.2e-06 55.1 41 63.4
Glyma.16G103500 Glycine max HOM05D001165 ORTHO05D001347 6.2e-06 55.1 41 61.0
Lj2g0018357 Lotus japonicus HOM05D001165 ORTHO05D001347 6.2e-06 55.1 43 60.5
MD06G1022700 Malus domestica HOM05D001165 ORTHO05D001347 6.2e-06 55.1 41 61.0
PSO384G1883 Papaver somniferum HOM05D001165 ORTHO05D001347 6.2e-06 55.1 41 63.4
CARHR062840 Cardamine hirsuta HOM05D001165 ORTHO05D001347 8.0e-06 54.7 51 56.9
DCAR_006422 Daucus carota HOM05D001165 ORTHO05D001347 8.0e-06 54.7 43 65.1
DCAR_019914 Daucus carota HOM05D001165 ORTHO05D001347 8.0e-06 54.7 45 66.7
Nitab4.5_0007729g0020 Nicotiana tabacum HOM05D001165 ORTHO05D001347 8.0e-06 54.7 55 45.5
Phvul.002G113900 Phaseolus vulgaris HOM05D001165 ORTHO05D001347 8.0e-06 54.7 42 61.9
Thecc.02G019200 Theobroma cacao HOM05D001165 ORTHO05D001347 8.0e-06 54.7 42 61.9
GSVIVG01033464001 Vitis vinifera HOM05D001165 ORTHO05D001347 8.0e-06 54.7 49 57.1


User provided reference genes

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