Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold21G09652 Striga asiatica HOM05D003901 ORTHO05D051379 1.7e-60 235.7 111 100.0
SGA_v2.0_scaffold254G45250 Striga asiatica HOM05D005714 ORTHO05D051379 6.0e-50 200.7 110 86.4
SGA_v2.0_scaffold147G36366 Striga asiatica HOM05D003901 ORTHO05D004511 2.3e-09 65.9 35 82.9
MSTRG.18747 Avicennia marina HOM05D003901 ORTHO05D004511 5.7e-08 61.2 35 80.0
SGA_v2.0_scaffold22G09887 Striga asiatica HOM05D003901 ORTHO05D004511 5.7e-08 61.2 35 80.0
Actinidia07234 Actinidia chinensis HOM05D003901 ORTHO05D004511 7.4e-08 60.8 52 55.8
Migut.D02350 Erythranthe guttata HOM05D003901 ORTHO05D004511 9.7e-08 60.5 52 59.6
Gohir.A08G004600 Gossypium hirsutum HOM05D003901 ORTHO05D004511 9.7e-08 60.5 62 46.8
Aqoxy4G02822 Aquilegia oxysepala HOM05D003901 ORTHO05D004511 2.2e-07 59.3 35 77.1
Ca_19879_v3 Cicer arietinum L. HOM05D003901 ORTHO05D004511 2.2e-07 59.3 62 46.8
EL10Ac7g15802 Beta vulgaris HOM05D003901 ORTHO05D004511 2.8e-07 58.9 35 77.1
Sabra09G0112300 Salix brachista HOM05D003901 ORTHO05D004511 2.8e-07 58.9 49 59.2
Sabra09G0115000 Salix brachista HOM05D003901 ORTHO05D004511 2.8e-07 58.9 49 59.2
Actinidia24202 Actinidia chinensis HOM05D003901 ORTHO05D004511 3.7e-07 58.5 35 77.1
Ah.08g215860 Amaranthus hybridus HOM05D003901 ORTHO05D004511 3.7e-07 58.5 35 77.1
CSS0013179 Camellia sinensis var. sinensis HOM05D003901 ORTHO05D004511 3.7e-07 58.5 35 77.1
CSS0026986 Camellia sinensis var. sinensis HOM05D003901 ORTHO05D004511 3.7e-07 58.5 35 77.1
CAN.G942.7 Capsicum annuum HOM05D003901 ORTHO05D004511 3.7e-07 58.5 35 77.1
AUR62009782 Chenopodium quinoa HOM05D003901 ORTHO05D004511 3.7e-07 58.5 35 77.1
AUR62039227 Chenopodium quinoa HOM05D003901 ORTHO05D004511 3.7e-07 58.5 35 77.1
Dinv29461 Davidia involucrata HOM05D003901 ORTHO05D004511 3.7e-07 58.5 35 77.1
Nitab4.5_0000234g0130 Nicotiana tabacum HOM05D003901 ORTHO05D004511 3.7e-07 58.5 35 77.1
Nitab4.5_0002837g0010 Nicotiana tabacum HOM05D003901 ORTHO05D004511 3.7e-07 58.5 35 77.1
TWI31G1346 Tripterygium wilfordii HOM05D003901 ORTHO05D004511 3.7e-07 58.5 35 77.1
GSVIVG01036170001 Vitis vinifera HOM05D003901 ORTHO05D004511 3.7e-07 58.5 35 77.1
Cfa010046 Carpinus fangiana HOM05D003901 ORTHO05D004511 4.8e-07 58.2 35 74.3
CiPaw.14G101900 Carya illinoinensis HOM05D003901 ORTHO05D004511 4.8e-07 58.2 35 74.3
Haze_23407 Corylus avellana HOM05D003901 ORTHO05D004511 4.8e-07 58.2 35 74.3
Dinv42569 Davidia involucrata HOM05D003901 ORTHO05D004511 4.8e-07 58.2 35 77.1
Gorai.004G009300 Gossypium raimondii HOM05D003901 ORTHO05D004511 4.8e-07 58.2 35 74.3
QL01p012653 Quercus lobata HOM05D003901 ORTHO05D004511 4.8e-07 58.2 35 74.3
Sed0027491 Sechium edule HOM05D003901 ORTHO05D004511 4.8e-07 58.2 35 71.4
TAR623G0259 Trochodendron aralioides HOM05D003901 ORTHO05D004511 4.8e-07 58.2 35 74.3
Aqoxy2G01263 Aquilegia oxysepala HOM05D003901 ORTHO05D004511 6.3e-07 57.8 35 74.3
Aqoxy2G01563 Aquilegia oxysepala HOM05D003901 ORTHO05D004511 6.3e-07 57.8 35 74.3
ClCG02G022110 Citrullus lanatus HOM05D003901 ORTHO05D004511 6.3e-07 57.8 35 71.4
COL.COLO4_19917 Corchorus olitorius HOM05D003901 ORTHO05D004511 6.3e-07 57.8 35 71.4
MELO3C021430.2 Cucumis melo HOM05D003901 ORTHO05D004511 6.3e-07 57.8 35 71.4
CsaV3_6G014950 Cucumis sativus L. HOM05D003901 ORTHO05D004511 6.3e-07 57.8 35 71.4
Duzib150G1114 Durio zibethinus HOM05D003901 ORTHO05D004511 6.3e-07 57.8 35 71.4
Duzib168G1973 Durio zibethinus HOM05D003901 ORTHO05D004511 6.3e-07 57.8 35 71.4
Duzib170G0819 Durio zibethinus HOM05D003901 ORTHO05D004511 6.3e-07 57.8 35 71.4
Glyma.12G183500 Glycine max HOM05D003901 ORTHO05D004511 6.3e-07 57.8 35 71.4
Glyma.13G317500 Glycine max HOM05D003901 ORTHO05D004511 6.3e-07 57.8 35 71.4
Gohir.A05G082000 Gossypium hirsutum HOM05D003901 ORTHO05D004511 6.3e-07 57.8 35 71.4
Lj3g0014833 Lotus japonicus HOM05D003901 ORTHO05D004511 6.3e-07 57.8 35 71.4
Phvul.005G125300 Phaseolus vulgaris HOM05D003901 ORTHO05D004511 6.3e-07 57.8 35 71.4
Solyc11g067200.2 Solanum lycopersicum HOM05D003901 ORTHO05D004511 6.3e-07 57.8 35 74.3
Sopen11g026900 Solanum pennellii HOM05D003901 ORTHO05D004511 6.3e-07 57.8 35 74.3
PGSC0003DMG400007404 Solanum tuberosum HOM05D003901 ORTHO05D004511 6.3e-07 57.8 35 74.3
TPR.G7702 Trifolium pratense HOM05D003901 ORTHO05D004511 6.3e-07 57.8 35 71.4
VMungo1080G0029 Vigna mungo HOM05D003901 ORTHO05D004511 6.3e-07 57.8 35 71.4
PSO339G1552 Papaver somniferum HOM05D003901 ORTHO05D004511 8.2e-07 57.4 35 74.3
PSO384G0212 Papaver somniferum HOM05D003901 ORTHO05D004511 8.2e-07 57.4 35 74.3
TWI79G1394 Tripterygium wilfordii HOM05D003901 ORTHO05D004511 8.2e-07 57.4 35 74.3
CDE06G1438 Ceratophyllum demersum HOM05D003901 ORTHO05D004511 1.1e-06 57.0 33 78.8
CDE08G0670 Ceratophyllum demersum HOM05D003901 ORTHO05D004511 1.1e-06 57.0 33 78.8
Ca_19387_v3 Cicer arietinum L. HOM05D003901 ORTHO05D004511 1.1e-06 57.0 62 46.8
Ca_19390_v3 Cicer arietinum L. HOM05D003901 ORTHO05D004511 1.1e-06 57.0 62 46.8
Lsat_1_v5_gn_6_40560 Lactuca sativa HOM05D003901 ORTHO05D004511 1.1e-06 57.0 35 71.4
Potri.004G184900 Populus trichocarpa HOM05D003901 ORTHO05D004511 1.1e-06 57.0 49 59.2
Sabra04G0124700 Salix brachista HOM05D003901 ORTHO05D004511 1.1e-06 57.0 49 59.2
CSS0003254 Camellia sinensis var. sinensis HOM05D003901 ORTHO05D004511 1.4e-06 56.6 33 75.8
Cc01_g09440 Coffea canephora HOM05D003901 ORTHO05D004511 1.4e-06 56.6 35 68.6
Eucgr.B03876 Eucalyptus grandis HOM05D003901 ORTHO05D004511 1.4e-06 56.6 35 68.6
Gohir.D05G084900 Gossypium hirsutum HOM05D003901 ORTHO05D004511 1.4e-06 56.6 35 68.6
Gorai.009G086800 Gossypium raimondii HOM05D003901 ORTHO05D004511 1.4e-06 56.6 35 68.6
Potri.009G144800 Populus trichocarpa HOM05D003901 ORTHO05D004511 1.4e-06 56.6 54 55.6
Zm00001eb307860 Zea mays HOM05D003901 ORTHO05D004511 1.4e-06 56.6 62 46.8
FvH4_7g01610 Fragaria vesca HOM05D003901 ORTHO05D004511 1.8e-06 56.2 35 71.4
FAN03G3037 Fragaria x ananassa HOM05D003901 ORTHO05D004511 1.8e-06 56.2 35 71.4
FAN06G4251 Fragaria x ananassa HOM05D003901 ORTHO05D004511 1.8e-06 56.2 35 71.4
HanXRQChr13g0397211 Helianthus annuus HOM05D003901 ORTHO05D004511 1.8e-06 56.2 35 71.4
Sc12g0004380 Simmondsia chinensis HOM05D003901 ORTHO05D004511 1.8e-06 56.2 35 71.4
FAN11G2495 Fragaria x ananassa HOM05D003901 ORTHO05D004511 2.4e-06 55.8 35 71.4
FAN16G3118 Fragaria x ananassa HOM05D003901 ORTHO05D004511 2.4e-06 55.8 35 71.4
FAN21G1062 Fragaria x ananassa HOM05D003901 ORTHO05D004511 2.4e-06 55.8 35 71.4
FAN25G0348 Fragaria x ananassa HOM05D003901 ORTHO05D004511 2.4e-06 55.8 35 71.4
FAN25G0558 Fragaria x ananassa HOM05D003901 ORTHO05D004511 2.4e-06 55.8 35 71.4
MD00G1078300 Malus domestica HOM05D003901 ORTHO05D004511 2.4e-06 55.8 35 71.4
Os09g0567700 Oryza sativa ssp. japonica HOM05D003901 ORTHO05D004511 2.4e-06 55.8 62 46.8
Prupe.8G049400 Prunus persica HOM05D003901 ORTHO05D004511 2.4e-06 55.8 35 71.4
Prupe.8G049600 Prunus persica HOM05D003901 ORTHO05D004511 2.4e-06 55.8 35 71.4
RcHm_v2.0_Chr5g0044121 Rosa chinensis HOM05D003901 ORTHO05D004511 2.4e-06 55.8 35 71.4
Ah.15g095680 Amaranthus hybridus HOM05D003901 ORTHO05D004511 3.1e-06 55.5 35 71.4
CANSAT54G2221 Cannabis sativa HOM05D003901 ORTHO05D004511 3.1e-06 55.5 35 71.4
Ciclev10027719m.g Citrus clementina HOM05D003901 ORTHO05D004511 3.1e-06 55.5 35 68.6
Lj1A234G35 Lonicera japonica HOM05D003901 ORTHO05D004511 3.1e-06 55.5 35 68.6
Lj1C241G3 Lonicera japonica HOM05D003901 ORTHO05D004511 3.1e-06 55.5 35 68.6
Medtr4g053675 Medicago truncatula HOM05D003901 ORTHO05D004511 3.1e-06 55.5 35 68.6
RcHm_v2.0_Chr1g0317741 Rosa chinensis HOM05D003901 ORTHO05D004511 3.1e-06 55.5 35 71.4
TPR.G17239 Trifolium pratense HOM05D003901 ORTHO05D004511 3.1e-06 55.5 35 68.6
Medtr2g086140 Medicago truncatula HOM05D003901 ORTHO05D004511 4.1e-06 55.1 35 68.6
Psat5g093200 Pisum sativum HOM05D003901 ORTHO05D004511 4.1e-06 55.1 62 45.2
Rhsim13G0109800 Rhododendron simsii HOM05D003901 ORTHO05D004511 4.1e-06 55.1 35 71.4
vmacro03304 Vaccinium macrocarpon HOM05D003901 ORTHO05D004511 4.1e-06 55.1 35 71.4
ECA233G5986 Erigeron canadensis HOM05D003901 ORTHO05D004511 5.3e-06 54.7 35 68.6
MD10G1043400 Malus domestica HOM05D003901 ORTHO05D004511 5.3e-06 54.7 35 68.6
PGR102G2249 Punica granatum HOM05D003901 ORTHO05D004511 6.9e-06 54.3 35 68.6
Zm00001eb121570 Zea mays HOM05D003901 ORTHO05D004511 6.9e-06 54.3 62 45.2
Lalb_Chr01g0004811 Lupinus albus HOM05D003901 ORTHO05D004511 9.1e-06 53.9 35 62.9
Lalb_Chr03g0028001 Lupinus albus HOM05D003901 ORTHO05D004511 9.1e-06 53.9 35 65.7


User provided reference genes

Program Settings