Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold199G41170 Striga asiatica HOM05D000070 ORTHO05D003267 9.7e-175 616.7 308 100.0
SGA_v2.0_scaffold118G32488 Striga asiatica HOM05D000070 ORTHO05D005931 1.3e-25 121.3 180 47.8
MSTRG.1524 Avicennia marina HOM05D000070 ORTHO05D005931 4.3e-21 106.3 145 46.9
MSTRG.22453 Avicennia marina HOM05D000070 ORTHO05D005931 4.3e-21 106.3 197 41.6
Migut.C01257 Erythranthe guttata HOM05D000070 ORTHO05D005931 7.3e-21 105.5 197 41.6
SalBow7G2668 Salvia bowleyana HOM05D000070 ORTHO05D005931 9.5e-21 105.1 195 40.5
Nitab4.5_0003300g0060 Nicotiana tabacum HOM05D000070 ORTHO05D005931 2.3e-19 100.5 176 40.9
Lj6C54T5 Lonicera japonica HOM05D000070 ORTHO05D005931 6.8e-19 99.0 142 45.1
Cc10_g15760 Coffea canephora HOM05D000070 ORTHO05D005931 1.2e-18 98.2 142 44.4
Peaxi162Scf00281g00017 Petunia axillaris HOM05D000070 ORTHO05D005931 1.5e-18 97.8 197 38.1
HanXRQChr03g0091981 Helianthus annuus HOM05D000070 ORTHO05D005931 2.0e-18 97.4 179 39.7
Nitab4.5_0000131g0440 Nicotiana tabacum HOM05D000070 ORTHO05D005931 2.0e-18 97.4 192 38.5
CAN.G475.45 Capsicum annuum HOM05D000070 ORTHO05D005931 2.6e-18 97.1 177 39.5
Psat7g213760 Pisum sativum HOM05D000070 ORTHO05D005931 3.4e-18 96.7 145 42.1
Sabra07G0104200 Salix brachista HOM05D000070 ORTHO05D005931 3.4e-18 96.7 147 42.2
Solyc04g076180.4 Solanum lycopersicum HOM05D000070 ORTHO05D005931 4.4e-18 96.3 177 39.5
Sopen04g030020 Solanum pennellii HOM05D000070 ORTHO05D005931 4.4e-18 96.3 177 39.5
Actinidia34607 Actinidia chinensis HOM05D000070 ORTHO05D005931 5.8e-18 95.9 142 45.1
Actinidia35972 Actinidia chinensis HOM05D000070 ORTHO05D005931 5.8e-18 95.9 142 45.1
QL01p053543 Quercus lobata HOM05D000070 ORTHO05D005931 5.8e-18 95.9 112 49.1
Ca_20782_v3 Cicer arietinum L. HOM05D000070 ORTHO05D005931 7.5e-18 95.5 145 42.1
Gohir.A05G327300 Gossypium hirsutum HOM05D000070 ORTHO05D005931 9.8e-18 95.1 150 40.7
Gohir.D05G327400 Gossypium hirsutum HOM05D000070 ORTHO05D005931 9.8e-18 95.1 150 40.7
Gorai.009G351300 Gossypium raimondii HOM05D000070 ORTHO05D005931 9.8e-18 95.1 150 40.7
Potri.007G127900 Populus trichocarpa HOM05D000070 ORTHO05D005931 1.3e-17 94.7 202 35.6
Dinv36378 Davidia involucrata HOM05D000070 ORTHO05D005931 1.7e-17 94.4 145 42.1
ECA240G1160 Erigeron canadensis HOM05D000070 ORTHO05D005931 1.7e-17 94.4 144 43.8
Aqoxy2G04141 Aquilegia oxysepala HOM05D000070 ORTHO05D005931 2.2e-17 94.0 147 42.9
CSS0028544 Camellia sinensis var. sinensis HOM05D000070 ORTHO05D005931 2.2e-17 94.0 218 34.4
Glyma.12G052800 Glycine max HOM05D000070 ORTHO05D005931 2.2e-17 94.0 146 39.7
Phvul.011G054900 Phaseolus vulgaris HOM05D000070 ORTHO05D005931 2.2e-17 94.0 146 40.4
TPR.G34234 Trifolium pratense HOM05D000070 ORTHO05D005931 2.2e-17 94.0 145 41.4
QL10p048553 Quercus lobata HOM05D000070 ORTHO05D005931 2.9e-17 93.6 145 40.7
Sabra17G0020000 Salix brachista HOM05D000070 ORTHO05D005931 2.9e-17 93.6 147 42.2
VMungo1127G1655 Vigna mungo HOM05D000070 ORTHO05D005931 2.9e-17 93.6 143 40.6
AUR62015394 Chenopodium quinoa HOM05D000070 ORTHO05D005931 6.4e-17 92.4 180 36.7
Glyma.11G128300 Glycine max HOM05D000070 ORTHO05D005931 6.4e-17 92.4 146 39.0
Medtr4g067100 Medicago truncatula HOM05D000070 ORTHO05D005931 6.4e-17 92.4 145 40.7
TAR362G0755 Trochodendron aralioides HOM05D000070 ORTHO05D005931 6.4e-17 92.4 145 42.1
MELO3C011649.2 Cucumis melo HOM05D000070 ORTHO05D005931 8.3e-17 92.0 147 38.1
CsaV3_6G003880 Cucumis sativus L. HOM05D000070 ORTHO05D005931 8.3e-17 92.0 147 38.1
Lalb_Chr01g0003191 Lupinus albus HOM05D000070 ORTHO05D005931 8.3e-17 92.0 145 39.3
Manes.04G042700 Manihot esculenta HOM05D000070 ORTHO05D005931 8.3e-17 92.0 145 41.4
CiPaw.01G100800 Carya illinoinensis HOM05D000070 ORTHO05D005931 1.1e-16 91.7 145 40.7
FvH4_4g10720 Fragaria vesca HOM05D000070 ORTHO05D005931 1.1e-16 91.7 139 41.7
FAN07G1072 Fragaria x ananassa HOM05D000961 ORTHO05D005931 1.1e-16 91.7 139 41.7
FAN12G3303 Fragaria x ananassa HOM05D003140 ORTHO05D005931 1.1e-16 91.7 139 41.7
MBI11_g13788_MAGBIO Magnolia biondii HOM05D000070 ORTHO05D005931 1.1e-16 91.7 142 41.5
COL.COLO4_20908 Corchorus olitorius HOM05D000070 ORTHO05D005931 1.4e-16 91.3 145 39.3
Lj3g0013218 Lotus japonicus HOM05D000070 ORTHO05D005931 1.4e-16 91.3 142 41.5
RcHm_v2.0_Chr4g0406861 Rosa chinensis HOM05D000070 ORTHO05D005931 1.4e-16 91.3 142 39.4
Ciclev10018558m.g Citrus clementina HOM05D000070 ORTHO05D005931 1.9e-16 90.9 144 41.7
vmacro22679 Vaccinium macrocarpon HOM05D000070 ORTHO05D005931 1.9e-16 90.9 140 42.9
CANSAT54G0506 Cannabis sativa HOM05D000070 ORTHO05D005931 2.4e-16 90.5 142 41.5
FAN17G2943 Fragaria x ananassa HOM05D003140 ORTHO05D005931 2.4e-16 90.5 139 41.0
Nn1g09748 Nelumbo nucifera HOM05D000070 ORTHO05D005931 2.4e-16 90.5 147 40.8
Potri.017G030900 Populus trichocarpa HOM05D000070 ORTHO05D005931 2.4e-16 90.5 147 40.8
QL01p053252 Quercus lobata HOM05D000070 ORTHO05D005931 2.4e-16 90.5 144 40.3
Sed0022342 Sechium edule HOM05D000070 ORTHO05D005931 2.4e-16 90.5 147 37.4
Gohir.D02G016900 Gossypium hirsutum HOM05D000070 ORTHO05D005931 3.2e-16 90.1 147 39.5
Gorai.005G020700 Gossypium raimondii HOM05D000070 ORTHO05D005931 3.2e-16 90.1 147 39.5
QL01p053894 Quercus lobata HOM05D000070 ORTHO05D005931 3.2e-16 90.1 144 40.3
TWI15G0144 Tripterygium wilfordii HOM05D000070 ORTHO05D005931 3.2e-16 90.1 147 40.8
Atru.chr3.1506 Acer truncatum HOM05D000070 ORTHO05D005931 4.1e-16 89.7 147 39.5
arahy.Tifrunner.gnm1.ann1.B2FMMM Arachis hypogaea HOM05D000070 ORTHO05D005931 4.1e-16 89.7 209 31.6
arahy.Tifrunner.gnm1.ann1.KNUI9Y Arachis hypogaea HOM05D000070 ORTHO05D005931 4.1e-16 89.7 147 37.4
GSVIVG01010750001 Vitis vinifera HOM05D000070 ORTHO05D005931 4.1e-16 89.7 176 35.8
Haze_01497 Corylus avellana HOM05D000067 ORTHO05D005931 5.4e-16 89.4 143 40.6
AUR62002296 Chenopodium quinoa HOM05D000070 ORTHO05D005931 7.0e-16 89.0 180 36.1
Gohir.A02G015301 Gossypium hirsutum HOM05D000070 ORTHO05D005931 9.2e-16 88.6 147 39.5
QL01p052795 Quercus lobata HOM05D000070 ORTHO05D005931 9.2e-16 88.6 144 40.3
ATR0743G258 Amborella trichopoda HOM05D000070 ORTHO05D005931 1.2e-15 88.2 144 39.6
Cfa015158 Carpinus fangiana HOM05D000070 ORTHO05D005931 1.2e-15 88.2 143 39.9
Duzib151G0220 Durio zibethinus HOM05D000070 ORTHO05D005931 1.6e-15 87.8 147 38.8
PGR083G1687 Punica granatum HOM05D000070 ORTHO05D005931 1.6e-15 87.8 144 39.6
Sc25g0003000 Simmondsia chinensis HOM05D000070 ORTHO05D005931 1.6e-15 87.8 179 36.9
Cpa.g.sc9.267 Carica papaya HOM05D000070 ORTHO05D005931 2.1e-15 87.4 142 38.0
MD04G1007800 Malus domestica HOM05D000070 ORTHO05D005931 2.1e-15 87.4 142 38.7
Thecc.04G186200 Theobroma cacao HOM05D000070 ORTHO05D005931 2.1e-15 87.4 147 38.8
CDE07G0988 Ceratophyllum demersum HOM05D000070 ORTHO05D005931 2.7e-15 87.0 150 38.7
C05p04270 Brassica napus HOM05D000070 ORTHO05D005931 3.5e-15 86.7 141 39.7
Sp1g04750 Schrenkiella parvula HOM05D000070 ORTHO05D005931 3.5e-15 86.7 148 37.8
Ah.13g072900 Amaranthus hybridus HOM05D000070 ORTHO05D005931 4.6e-15 86.3 145 37.9
AT1G05910 Arabidopsis thaliana HOM05D000070 ORTHO05D005931 4.6e-15 86.3 141 39.7
A10p04610 Brassica napus HOM05D000070 ORTHO05D005931 4.6e-15 86.3 144 38.2
BraA10t42726Z Brassica rapa HOM05D000070 ORTHO05D005931 4.6e-15 86.3 144 38.2
PSO210G2057 Papaver somniferum HOM05D000070 ORTHO05D005931 6.0e-15 85.9 143 39.2
PSO832G4402 Papaver somniferum HOM05D000070 ORTHO05D005931 6.0e-15 85.9 143 39.2
Carub.0001s0528 Capsella rubella HOM05D000070 ORTHO05D005931 7.8e-15 85.5 141 39.7
Thhalv10006586m.g Eutrema salsugineum HOM05D000070 ORTHO05D005931 7.8e-15 85.5 141 39.0
Os09g0515100 Oryza sativa ssp. japonica HOM05D000070 ORTHO05D005931 7.8e-15 85.5 145 36.6
THA.LOC104826206 Tarenaya hassleriana HOM05D000070 ORTHO05D005931 7.8e-15 85.5 138 39.9
AL1G15870 Arabidopsis lyrata HOM05D000070 ORTHO05D005931 1.0e-14 85.1 141 39.0
EL10Ac3g05926 Beta vulgaris HOM05D000070 ORTHO05D005931 1.0e-14 85.1 145 38.6
CARHR005470 Cardamine hirsuta HOM05D000070 ORTHO05D005931 1.0e-14 85.1 270 29.6
Rhsim09G0028300 Rhododendron simsii HOM05D000070 ORTHO05D005931 1.3e-14 84.7 150 41.3
BcaC07g42100 Brassica carinata HOM05D000070 ORTHO05D005931 1.7e-14 84.3 141 38.3
Sed0006140 Sechium edule HOM05D000070 ORTHO05D005931 2.3e-14 84.0 147 36.1
Aa31LG1G8340 Aethionema arabicum HOM05D000070 ORTHO05D005931 3.9e-14 83.2 141 39.0
CDE04G2237 Ceratophyllum demersum HOM05D000070 ORTHO05D005931 3.9e-14 83.2 144 38.9
BraA09t42057Z Brassica rapa HOM05D000070 ORTHO05D005931 6.6e-14 82.4 141 39.0
HPP92_008996 Vanilla planifolia HOM05D000070 ORTHO05D005931 6.6e-14 82.4 139 37.4
HPP92_009007 Vanilla planifolia HOM05D000070 ORTHO05D005931 6.6e-14 82.4 139 37.4
Zm00001eb318390 Zea mays HOM05D000070 ORTHO05D005931 8.6e-14 82.0 142 35.9
A09p67240 Brassica napus HOM05D000070 ORTHO05D005931 1.5e-13 81.3 141 38.3
CBR_g32464 Chara braunii HOM05D000070 ORTHO05D005931 1.9e-13 80.9 156 36.5
BolC5t29202H Brassica oleracea HOM05D000070 ORTHO05D005931 2.5e-13 80.5 159 35.2
Eucgr.A00274 Eucalyptus grandis HOM05D000070 ORTHO05D005931 2.5e-13 80.5 106 46.2
C08p51530 Brassica napus HOM05D000070 ORTHO05D005931 3.3e-13 80.1 141 37.6
BolC8t52681H Brassica oleracea HOM05D000070 ORTHO05D005931 3.3e-13 80.1 141 37.6
Eucgr.A00078 Eucalyptus grandis HOM05D000070 ORTHO05D005931 1.1e-11 75.1 50 74.0
Gorai.005G020500 Gossypium raimondii HOM05D000070 ORTHO05D005931 1.4e-11 74.7 50 70.0
ECA246G2834 Erigeron canadensis HOM05D000006 ORTHO05D000001 1.8e-11 74.3 50 74.0
Mapoly0028s0109 Marchantia polymorpha HOM05D000070 ORTHO05D005931 1.8e-11 74.3 140 35.0
DCAR_016935 Daucus carota HOM05D000070 ORTHO05D005931 4.0e-11 73.2 85 50.6
Prupe.1G191800 Prunus persica HOM05D000070 ORTHO05D005931 8.9e-11 72.0 53 64.2
Lsat_1_v5_gn_3_121920 Lactuca sativa HOM05D000070 ORTHO05D005931 1.2e-10 71.6 142 35.9
unitig_0.g2133 Utricularia gibba HOM05D000070 ORTHO05D005931 5.8e-10 69.3 123 36.6
BcaC05g24320 Brassica carinata HOM05D000070 ORTHO05D005931 1.7e-09 67.8 159 35.8
AagrBONN_evm.TU.Sc2ySwM_228.2500 Anthoceros agrestis HOM05D000070 ORTHO05D005931 3.7e-09 66.6 139 33.1
SMO118G0259 Selaginella moellendorffii HOM05D000070 ORTHO05D005931 8.3e-09 65.5 139 32.4
SGA_v2.0_scaffold166G38311 Striga asiatica HOM05D002644 ORTHO05D003267 1.1e-08 65.1 51 62.7
Pp3c23_2940 Physcomitrium patens HOM05D000070 ORTHO05D005931 7.1e-08 62.4 142 33.8
RcHm_v2.0_Chr3g0496841 Rosa chinensis HOM05D000070 ORTHO05D005931 2.1e-07 60.8 88 39.8
Hund12010 Selenicereus undatus HOM05D000070 ORTHO05D005931 2.1e-07 60.8 118 34.7
Pp3c20_16710 Physcomitrium patens HOM05D000070 ORTHO05D005931 2.7e-07 60.5 50 60.0
arahy.Tifrunner.gnm1.ann1.4K4GN8 Arachis hypogaea HOM05D000070 ORTHO05D005931 1.0e-06 58.5 225 24.9
Psat4g077560 Pisum sativum HOM05D006816 ORTHO05D008666 3.0e-06 57.0 35 71.4
Psat5g179240 Pisum sativum HOM05D002906 ORTHO05D003211 3.0e-06 57.0 35 71.4
Psat5g179120 Pisum sativum HOM05D002906 ORTHO05D003211 8.6e-06 55.5 35 68.6


User provided reference genes

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